Wall clock time and date at job start Fri Apr 10 2020 22:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 H 1.07996 * 120.00373 * 240.00281 * 4 2 1 6 6 C 1.37877 * 119.99682 * 60.00337 * 4 2 1 7 7 N 1.31519 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47101 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47244 * 119.99846 * 8 6 4 11 11 H 1.48493 * 109.47383 * 240.00241 * 8 6 4 12 12 N 1.46506 * 109.47021 * 120.00396 * 2 1 3 13 13 C 1.46498 * 120.00239 * 59.71865 * 12 2 1 14 14 C 1.34777 * 119.99873 * 240.00060 * 12 2 1 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 12 2 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 12 18 18 H 1.09000 * 109.46418 * 304.99803 * 17 16 14 19 19 O 1.42898 * 109.46919 * 64.99752 * 17 16 14 20 20 C 1.50700 * 109.47081 * 185.00079 * 17 16 14 21 21 C 1.38241 * 119.98517 * 279.72360 * 20 17 16 22 22 C 1.38214 * 120.01190 * 179.72559 * 21 20 17 23 23 C 1.38352 * 119.98764 * 0.55051 * 22 21 20 24 24 Cl 1.73602 * 120.01626 * 179.74754 * 23 22 21 25 25 C 1.38357 * 119.97320 * 359.72073 * 23 22 21 26 26 C 1.38217 * 119.98319 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 28 28 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 30 30 H 0.97000 * 119.99941 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 32 32 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 34 34 H 1.09004 * 109.47043 * 299.99732 * 16 14 12 35 35 H 1.09000 * 109.46978 * 59.99653 * 16 14 12 36 36 H 0.96698 * 114.00197 * 60.00511 * 19 17 16 37 37 H 1.08000 * 119.99269 * 0.02562 * 21 20 17 38 38 H 1.08001 * 120.00719 * 180.27494 * 22 21 20 39 39 H 1.07997 * 120.01000 * 179.97438 * 25 23 22 40 40 H 1.08003 * 119.98892 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8160 12 7 2.0183 -0.6907 1.1962 13 6 1.6593 -2.0915 1.4311 14 6 2.7931 -0.0358 2.0834 15 8 3.0865 1.1253 1.8912 16 6 3.2950 -0.7460 3.3141 17 6 4.1456 0.2154 4.1466 18 1 4.9424 0.6256 3.5262 19 8 3.3244 1.2792 4.6324 20 6 4.7477 -0.5269 5.3118 21 6 3.9894 -0.7712 6.4415 22 6 4.5393 -1.4569 7.5082 23 6 5.8524 -1.8887 7.4497 24 17 6.5458 -2.7443 8.7917 25 6 6.6126 -1.6390 6.3210 26 6 6.0599 -0.9578 5.2528 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7096 1.1619 -3.4844 31 1 2.4070 -2.7396 0.9740 32 1 1.6203 -2.2817 2.5036 33 1 0.6835 -2.2953 0.9902 34 1 2.4469 -1.0882 3.9073 35 1 3.9003 -1.6027 3.0177 36 1 2.5930 0.9868 5.1932 37 1 2.9657 -0.4305 6.4887 38 1 3.9454 -1.6516 8.3890 39 1 7.6377 -1.9755 6.2748 40 1 6.6531 -0.7631 4.3715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091441908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:27 Heat of formation + Delta-G solvation = -69.346103 kcal Electronic energy + Delta-G solvation = -23185.553713 eV Core-core repulsion = 19605.128507 eV Total energy + Delta-G solvation = -3580.425207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15978 -38.98749 -37.20460 -36.37968 -35.19502 -32.92972 -32.07057 -31.34111 -30.20427 -28.69375 -26.12078 -25.22702 -24.55896 -23.15989 -21.61502 -20.72521 -18.51039 -17.80748 -16.72106 -16.43586 -16.24797 -16.10516 -15.21365 -15.06581 -15.01576 -14.31910 -13.98549 -13.96418 -13.73716 -13.70347 -12.82686 -12.64028 -12.54452 -12.42017 -11.95836 -11.79745 -11.70734 -11.55514 -11.44640 -11.16206 -11.07114 -10.95665 -10.80352 -10.69586 -10.23820 -10.19812 -10.14117 -9.36878 -9.16863 -9.01636 -8.76882 -8.42550 -7.56541 -6.07311 -4.15282 0.78514 0.96564 1.81163 3.25177 3.25967 3.32954 3.35404 3.42162 3.89179 4.36994 4.41105 4.46675 4.51764 4.55600 4.88839 4.99039 5.05136 5.18434 5.23300 5.33868 5.37805 5.56736 5.62547 5.74385 5.83834 5.88987 5.89776 6.04613 6.27551 6.29332 6.45127 6.76262 6.81972 7.06165 7.44348 7.53388 7.65656 7.72224 8.02241 8.20380 8.54728 8.84526 9.08976 9.51504 10.97974 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.002664 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.900472 B =10507.003370 C =10873.093850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.596 5.596 13 C 0.087 3.913 14 C 0.503 3.497 15 O -0.537 6.537 16 C -0.169 4.169 17 C 0.164 3.836 18 H 0.117 0.883 19 O -0.534 6.534 20 C -0.105 4.105 21 C -0.100 4.100 22 C -0.107 4.107 23 C -0.038 4.038 24 Cl -0.075 7.075 25 C -0.108 4.108 26 C -0.096 4.096 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.364 0.636 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -7.983 20.000 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.328 5.328 13 C -0.057 4.057 14 C 0.289 3.711 15 O -0.415 6.415 16 C -0.210 4.210 17 C 0.104 3.896 18 H 0.134 0.866 19 O -0.338 6.338 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.065 4.065 24 Cl -0.046 7.046 25 C -0.126 4.126 26 C -0.114 4.114 27 H 0.112 0.888 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.211 0.789 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.957 -6.963 19.499 21.843 hybrid contribution -0.052 -1.234 -0.438 1.310 sum 6.906 -8.197 19.061 21.868 Atomic orbital electron populations 1.22093 0.98341 0.99261 1.00852 1.18928 0.90793 0.94549 0.79997 0.91865 1.21358 1.31692 1.12904 0.90325 0.92311 1.24904 0.94994 0.94993 0.98986 1.69892 1.36474 1.22606 1.23629 0.86446 0.78597 0.79570 0.82805 1.19851 1.20961 1.20909 1.48239 1.49261 1.11640 1.23654 1.21539 1.01591 0.83472 0.99101 1.20134 0.79661 0.87166 0.84134 1.90700 1.57790 1.16647 1.76358 1.22465 1.01212 1.00165 0.97110 1.20584 0.92877 0.86250 0.89852 0.86551 1.86809 1.44053 1.32977 1.69911 1.20861 0.94722 0.98249 0.96701 1.20880 1.00150 0.98137 0.92673 1.21009 0.93462 0.98542 0.99585 1.20954 0.94532 1.00531 0.90445 1.98372 1.84646 1.75943 1.45672 1.21069 1.00269 0.99208 0.92090 1.21050 0.94613 0.97234 0.98486 0.88830 0.95181 0.96987 0.92749 0.93389 0.93153 0.90934 0.89174 0.88485 0.78895 0.85091 0.84865 0.84800 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.94 37.16 0.33 -3.16 16 2 C 0.26 6.54 2.64 -69.08 -0.18 6.36 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.11 8.37 -34.44 -0.29 -14.40 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.60 -12.37 2.75 -175.27 -0.48 -12.85 16 13 C 0.09 1.40 9.50 59.85 0.57 1.97 16 14 C 0.50 9.94 7.55 -10.99 -0.08 9.85 16 15 O -0.54 -13.03 14.75 -8.87 -0.13 -13.16 16 16 C -0.17 -2.24 3.92 -27.88 -0.11 -2.35 16 17 C 0.16 2.11 2.76 -27.88 -0.08 2.03 16 18 H 0.12 1.69 7.82 -51.93 -0.41 1.28 16 19 O -0.53 -7.57 12.42 -49.66 -0.62 -8.19 16 20 C -0.10 -1.07 4.97 -104.62 -0.52 -1.59 16 21 C -0.10 -0.88 9.32 -39.59 -0.37 -1.25 16 22 C -0.11 -0.92 9.83 -39.55 -0.39 -1.31 16 23 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.08 -0.65 28.96 -51.86 -1.50 -2.15 16 25 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 26 C -0.10 -0.91 9.67 -39.59 -0.38 -1.29 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.65 6.65 -51.93 -0.35 0.31 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.62 6.43 -51.93 -0.33 0.28 16 33 H 0.07 1.19 6.41 -51.93 -0.33 0.86 16 34 H 0.09 0.98 7.39 -51.93 -0.38 0.59 16 35 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 36 H 0.36 3.62 7.50 45.56 0.34 3.96 16 37 H 0.13 0.87 6.78 -52.49 -0.36 0.52 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 1.13 8.04 -52.48 -0.42 0.70 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -32.75 346.44 -8.70 -41.45 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.56 Total: 3.68 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.23 Total: -5.46 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.15 Total: -37.36 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.75 Total: -21.35 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.75 -8.70 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091441908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.895 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds