Wall clock time and date at job start Fri Apr 10 2020 22:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47075 * 2 1 4 4 H 1.08998 * 109.46612 * 305.00487 * 3 2 1 5 5 C 1.50696 * 109.47030 * 184.99939 * 3 2 1 6 6 H 1.08004 * 119.99963 * 240.00066 * 5 3 2 7 7 C 1.37875 * 120.00030 * 60.00482 * 5 3 2 8 8 N 1.31512 * 119.99893 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99937 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46948 * 270.00149 * 9 7 5 11 11 H 1.48493 * 109.47184 * 30.00399 * 9 7 5 12 12 H 1.48507 * 109.47001 * 150.00571 * 9 7 5 13 13 N 1.46503 * 109.46608 * 64.99900 * 3 2 1 14 14 C 1.34768 * 120.00250 * 274.99719 * 13 3 2 15 15 O 1.21287 * 119.99936 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00280 * 180.02562 * 14 13 3 17 17 C 1.53007 * 109.46943 * 275.28769 * 16 14 13 18 18 O 1.42894 * 109.47108 * 35.28519 * 16 14 13 19 19 C 1.50694 * 109.47512 * 155.28901 * 16 14 13 20 20 C 1.38244 * 119.98877 * 247.27959 * 19 16 14 21 21 C 1.38211 * 120.01515 * 179.72633 * 20 19 16 22 22 C 1.38356 * 119.98642 * 0.54239 * 21 20 19 23 23 Cl 1.73603 * 120.01229 * 179.70707 * 22 21 20 24 24 C 1.38345 * 119.97252 * 359.72952 * 22 21 20 25 25 C 1.38218 * 119.98835 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47087 * 299.99776 * 1 2 3 28 28 H 1.08993 * 109.47301 * 60.00013 * 1 2 3 29 29 H 1.09004 * 109.47380 * 240.00283 * 2 1 3 30 30 H 1.09002 * 109.47225 * 120.00249 * 2 1 3 31 31 H 0.97009 * 120.00074 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99913 * 95.00602 * 13 3 2 33 33 H 1.08994 * 109.46935 * 59.99968 * 17 16 14 34 34 H 1.08999 * 109.47166 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.46919 * 299.99937 * 17 16 14 36 36 H 0.96700 * 114.00388 * 60.00567 * 18 16 14 37 37 H 1.07998 * 119.99174 * 359.97438 * 20 19 16 38 38 H 1.08002 * 120.00749 * 180.27185 * 21 20 19 39 39 H 1.08006 * 120.00925 * 180.02562 * 24 22 21 40 40 H 1.07999 * 119.99414 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1432 0.8785 -1.2280 8 7 5.4539 0.8806 -1.3362 9 14 3.0963 0.1091 -2.5701 10 1 2.8755 -1.3271 -2.2634 11 1 1.7877 0.8075 -2.6387 12 1 3.7937 0.2350 -3.8752 13 7 1.6523 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6319 0.4344 16 6 0.0366 3.3385 2.6545 17 6 -0.5126 2.2939 3.6284 18 8 1.1782 3.9746 3.2323 19 6 -1.0250 4.3704 2.3736 20 6 -0.7432 5.7139 2.5374 21 6 -1.7147 6.6611 2.2744 22 6 -2.9730 6.2641 1.8581 23 17 -4.1961 7.4529 1.5349 24 6 -3.2561 4.9192 1.6998 25 6 -2.2819 3.9731 1.9571 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8771 0.4821 -2.1129 32 1 2.2719 2.1232 1.9979 33 1 0.2552 1.5475 3.8316 34 1 -0.8013 2.7815 4.5595 35 1 -1.3835 1.8086 3.1876 36 1 1.5793 4.6504 2.6688 37 1 0.2375 6.0235 2.8670 38 1 -1.4931 7.7109 2.3982 39 1 -4.2381 4.6085 1.3744 40 1 -2.5030 2.9232 1.8340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293415830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:01 Heat of formation + Delta-G solvation = -67.674251 kcal Electronic energy + Delta-G solvation = -24137.063571 eV Core-core repulsion = 20556.710862 eV Total energy + Delta-G solvation = -3580.352710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60552 -38.83786 -37.08805 -36.33034 -35.40127 -32.40426 -32.31814 -31.48978 -31.07418 -29.34793 -27.54194 -24.60689 -22.95001 -22.81990 -22.08539 -20.34560 -19.62727 -18.47983 -17.66171 -16.45019 -16.16368 -15.87711 -15.38446 -15.00839 -14.71049 -14.58091 -13.79767 -13.70617 -13.55433 -13.48769 -13.04985 -12.80541 -12.46331 -12.37030 -12.15318 -11.99643 -11.86746 -11.80567 -11.63730 -11.46325 -11.16093 -10.95620 -10.92723 -10.78066 -10.64440 -9.97763 -9.59607 -9.28314 -9.19516 -9.03132 -8.79805 -8.65738 -8.14437 -6.24923 -4.27835 0.96769 1.19987 1.97191 2.99214 3.19788 3.32162 3.35931 3.39111 3.82939 4.03958 4.27443 4.45196 4.63509 4.74872 5.01952 5.08600 5.13443 5.22476 5.33268 5.50363 5.61419 5.66133 5.81705 5.88788 5.96197 5.96667 6.06812 6.11176 6.11763 6.37714 6.58612 6.63376 6.64520 6.77411 6.87748 7.16340 7.22782 7.36662 7.45249 8.08912 8.46181 8.70128 8.83072 9.35459 10.87033 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003595 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.062325 B = 7787.153579 C = 7994.737464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.294 1.294 13 N -0.687 5.687 14 C 0.480 3.520 15 O -0.537 6.537 16 C 0.158 3.842 17 C -0.133 4.133 18 O -0.544 6.544 19 C -0.092 4.092 20 C -0.097 4.097 21 C -0.113 4.113 22 C -0.033 4.033 23 Cl -0.078 7.078 24 C -0.114 4.114 25 C -0.064 4.064 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.268 0.732 32 H 0.400 0.600 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 7.815 9.796 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.185 1.185 12 H -0.221 1.221 13 N -0.335 5.335 14 C 0.263 3.737 15 O -0.416 6.416 16 C 0.113 3.887 17 C -0.191 4.191 18 O -0.351 6.351 19 C -0.093 4.093 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.059 4.059 23 Cl -0.049 7.049 24 C -0.132 4.132 25 C -0.083 4.083 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.706 7.429 9.457 19.781 hybrid contribution -0.026 0.001 -1.007 1.008 sum -15.731 7.431 8.449 19.341 Atomic orbital electron populations 1.21876 0.96989 0.99079 1.02152 1.22291 0.94327 0.99935 1.01205 1.19187 0.95720 0.88524 0.82709 0.93359 1.21040 0.88542 1.39961 1.07873 0.90115 1.24831 0.94856 0.95126 0.97645 1.69866 1.08676 1.44368 1.29822 0.86913 0.80935 0.79970 0.80965 1.20217 1.18533 1.22132 1.46165 1.14625 1.54657 1.18074 1.20848 0.83393 0.80353 0.89123 1.90700 1.51308 1.59908 1.39646 1.20259 0.84858 0.91315 0.92233 1.21759 1.01640 0.97167 0.98491 1.86562 1.44019 1.57213 1.47266 1.20165 0.95229 0.94203 0.99751 1.20889 0.99646 0.91741 0.99219 1.20944 0.91515 1.00326 1.00431 1.20945 0.90732 0.90111 1.04159 1.98360 1.54909 1.57507 1.94155 1.21023 1.00487 0.90727 1.00990 1.20915 0.91626 0.99996 0.95736 0.94914 0.93027 0.92868 0.92728 0.92227 0.92245 0.76508 0.90618 0.90712 0.90403 0.76705 0.84697 0.84933 0.84939 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.51 37.16 0.32 -2.43 16 2 C -0.14 -2.98 5.11 -26.73 -0.14 -3.11 16 3 C 0.24 5.50 1.83 -69.08 -0.13 5.37 16 4 H 0.05 1.23 6.64 -51.93 -0.34 0.88 16 5 C -0.54 -14.09 9.31 -34.44 -0.32 -14.41 16 6 H 0.08 2.24 7.98 -52.48 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 9 Si 0.88 21.38 24.41 -169.99 -4.15 17.23 16 10 H -0.28 -6.47 6.83 56.52 0.39 -6.08 16 11 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.69 -12.81 4.93 -54.93 -0.27 -13.08 16 14 C 0.48 8.20 5.25 -10.99 -0.06 8.14 16 15 O -0.54 -10.66 12.34 5.55 0.07 -10.59 16 16 C 0.16 2.07 1.15 -92.92 -0.11 1.97 16 17 C -0.13 -1.51 8.55 37.16 0.32 -1.19 16 18 O -0.54 -6.56 11.51 -35.23 -0.41 -6.97 16 19 C -0.09 -1.18 4.56 -104.62 -0.48 -1.66 16 20 C -0.10 -1.10 9.24 -39.59 -0.37 -1.46 16 21 C -0.11 -1.24 9.83 -39.55 -0.39 -1.63 16 22 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 23 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 24 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 25 C -0.06 -0.81 8.00 -39.59 -0.32 -1.13 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.94 5.64 -51.93 -0.29 0.64 16 28 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 29 H 0.05 1.24 3.21 -51.93 -0.17 1.08 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.40 6.91 7.98 -40.82 -0.33 6.59 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.83 7.01 -51.93 -0.36 0.46 16 36 H 0.38 3.85 7.76 45.56 0.35 4.20 16 37 H 0.14 1.24 6.44 -52.49 -0.34 0.90 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 40 H 0.13 1.65 6.97 -52.49 -0.37 1.28 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -30.28 333.99 -7.24 -37.52 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.39 Total: 10.17 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.40 Total: -11.79 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.50 Total: -38.29 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.34 Total: -17.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.15 Total: 17.23 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.28 -7.24 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293415830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.156 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds