Wall clock time and date at job start Fri Apr 10 2020 22:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47553 * 2 1 4 4 C 1.50711 * 109.46764 * 119.99854 * 2 1 3 5 5 H 1.07994 * 119.99862 * 120.00476 * 4 2 1 6 6 C 1.37874 * 119.99526 * 299.99931 * 4 2 1 7 7 N 1.31518 * 119.99540 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00414 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.46984 * 89.99927 * 8 6 4 10 10 H 1.48500 * 109.47205 * 210.00035 * 8 6 4 11 11 H 1.48502 * 109.47055 * 329.99965 * 8 6 4 12 12 N 1.46505 * 109.47293 * 239.99330 * 2 1 3 13 13 C 1.34768 * 119.99625 * 85.00354 * 12 2 1 14 14 O 1.21282 * 120.00268 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99939 * 179.97438 * 13 12 2 16 16 C 1.53003 * 109.47287 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.46707 * 305.00170 * 16 15 13 18 18 N 1.46494 * 109.46861 * 65.00126 * 16 15 13 19 19 C 1.34779 * 120.00026 * 206.14669 * 18 16 15 20 20 N 1.34780 * 120.00425 * 174.98337 * 19 18 16 21 21 O 1.21595 * 120.00011 * 354.98175 * 19 18 16 22 22 C 1.50699 * 109.47151 * 185.00292 * 16 15 13 23 23 C 1.33390 * 125.20262 * 105.12621 * 22 16 15 24 24 C 1.38425 * 114.91988 * 179.97438 * 23 22 16 25 25 C 1.33386 * 114.92094 * 0.02562 * 24 23 22 26 26 S 1.75881 * 125.20216 * 284.82063 * 22 16 15 27 27 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47123 * 300.00663 * 1 2 3 29 29 H 1.09000 * 109.46660 * 60.00211 * 1 2 3 30 30 H 0.97005 * 119.99581 * 180.02562 * 7 6 4 31 31 H 0.96995 * 120.00180 * 265.00490 * 12 2 1 32 32 H 1.08997 * 109.46991 * 60.00489 * 15 13 12 33 33 H 1.08998 * 109.47539 * 300.00162 * 15 13 12 34 34 H 0.96998 * 120.00597 * 26.15001 * 18 16 15 35 35 H 0.97002 * 119.99603 * 359.97438 * 20 19 18 36 36 H 0.96993 * 120.00000 * 179.72742 * 20 19 18 37 37 H 1.08000 * 122.53824 * 359.97438 * 23 22 16 38 38 H 1.08001 * 122.53696 * 180.02562 * 24 23 22 39 39 H 1.08002 * 125.20447 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6246 1.2792 2.6540 9 1 -0.8029 0.8728 2.6996 10 1 0.9757 1.9953 3.9067 11 1 0.8470 2.1766 1.4919 12 7 2.0184 -0.6908 -1.1961 13 6 2.1472 -0.0185 -2.3570 14 8 1.8583 1.1582 -2.4117 15 6 2.6501 -0.7288 -3.5873 16 6 2.7021 0.2543 -4.7585 17 1 1.7224 0.7131 -4.8915 18 7 3.6947 1.2948 -4.4788 19 6 3.5746 2.5110 -5.0471 20 7 4.4285 3.4987 -4.7124 21 8 2.6960 2.7172 -5.8620 22 6 3.0869 -0.4820 -6.0158 23 6 2.2520 -0.8011 -7.0060 24 6 2.8336 -1.4790 -8.0635 25 6 4.1406 -1.7108 -7.9319 26 16 4.7068 -1.0453 -6.4054 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.9031 -0.5276 4.4376 31 1 2.2491 -1.6319 -1.1525 32 1 1.9779 -1.5511 -3.8324 33 1 3.6494 -1.1207 -3.3977 34 1 4.4384 1.1086 -3.8846 35 1 5.1292 3.3343 -4.0621 36 1 4.3445 4.3727 -5.1244 37 1 1.2019 -0.5497 -6.9842 38 1 2.2716 -1.7961 -8.9296 39 1 4.7576 -2.2246 -8.6542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299438404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:50 Heat of formation + Delta-G solvation = -32.747645 kcal Electronic energy + Delta-G solvation = -23474.094341 eV Core-core repulsion = 19929.592620 eV Total energy + Delta-G solvation = -3544.501721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11129 -38.95419 -37.89794 -35.56148 -34.71440 -33.59874 -32.45202 -31.05725 -30.05473 -28.56139 -25.26380 -24.83854 -22.86715 -21.28689 -20.90113 -19.69072 -19.43490 -18.19575 -17.93891 -17.09871 -16.78087 -15.99205 -15.72767 -15.40015 -15.17346 -14.77086 -14.48229 -14.17995 -13.89057 -13.28132 -13.16058 -12.98401 -12.80105 -12.53141 -12.35360 -12.21836 -12.17321 -11.75232 -11.51962 -11.22500 -10.84403 -10.84069 -10.22065 -10.19184 -9.74521 -9.61368 -9.32046 -9.26735 -9.05693 -8.79150 -8.74329 -8.53649 -8.19102 -6.24688 -4.27419 0.87659 1.52451 1.90993 2.61926 2.99028 3.17809 3.21613 3.33030 3.37053 3.37541 3.82900 4.28398 4.52366 4.70081 4.76153 4.94432 5.09889 5.14847 5.34913 5.44579 5.49749 5.56628 5.79760 6.00539 6.19061 6.28481 6.32870 6.35626 6.52092 6.54098 6.73691 6.83123 6.96877 7.15709 7.25061 7.48372 8.00766 8.10651 8.48404 8.71878 8.73091 8.88913 9.36372 10.87410 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.003532 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.800500 B = 7924.538286 C = 8579.253018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.238 3.762 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.500 3.500 14 O -0.544 6.544 15 C -0.151 4.151 16 C 0.255 3.745 17 H 0.114 0.886 18 N -0.726 5.726 19 C 0.717 3.283 20 N -0.868 5.868 21 O -0.594 6.594 22 C -0.178 4.178 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.220 4.220 26 S 0.101 5.899 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.267 0.733 31 H 0.395 0.605 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.395 0.605 35 H 0.396 0.604 36 H 0.412 0.588 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -1.037 -19.932 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.350 5.350 13 C 0.285 3.715 14 O -0.422 6.422 15 C -0.192 4.192 16 C 0.147 3.853 17 H 0.132 0.868 18 N -0.381 5.381 19 C 0.415 3.585 20 N -0.435 5.435 21 O -0.471 6.471 22 C -0.297 4.297 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.356 4.356 26 S 0.364 5.636 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.228 0.772 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.229 0.771 35 H 0.224 0.776 36 H 0.244 0.756 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.579 -0.118 -19.671 20.742 hybrid contribution -1.148 0.291 0.003 1.185 sum 5.430 0.174 -19.668 20.405 Atomic orbital electron populations 1.22447 0.99346 1.00832 0.99316 1.19084 0.90110 0.94592 0.82810 0.93455 1.21042 1.33314 1.14428 0.88560 0.90215 1.24834 0.95464 0.96693 0.95545 1.69872 1.44868 1.40113 0.98060 0.86873 0.80583 0.83583 0.77400 1.20308 1.22181 1.18724 1.46195 1.65161 1.13821 1.09786 1.20298 0.78987 0.87615 0.84633 1.90713 1.50749 1.15781 1.84994 1.22087 1.04308 0.99452 0.93369 1.18795 0.93723 0.85382 0.87443 0.86817 1.44890 1.30071 1.11319 1.51815 1.15796 0.81626 0.80436 0.80621 1.42924 1.36566 1.14360 1.49699 1.90940 1.36564 1.82205 1.37437 1.25079 0.96424 1.06406 1.01801 1.20127 1.01438 1.01117 0.93069 1.20162 0.94349 1.01503 1.00212 1.25598 0.99280 1.08923 1.01760 1.84127 1.10290 1.53945 1.15227 0.92832 0.93529 0.94528 0.92273 0.77160 0.87221 0.88511 0.77100 0.77648 0.75638 0.84145 0.84402 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.96 37.16 0.33 -3.21 16 2 C 0.24 5.46 2.15 -69.07 -0.15 5.31 16 3 H 0.05 1.21 6.64 -51.93 -0.34 0.86 16 4 C -0.54 -14.06 9.31 -34.44 -0.32 -14.38 16 5 H 0.08 2.19 7.98 -52.49 -0.42 1.78 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 8 Si 0.89 21.53 24.37 -169.99 -4.14 17.39 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.70 -12.87 5.07 -54.93 -0.28 -13.15 16 13 C 0.50 8.47 7.66 -10.99 -0.08 8.39 16 14 O -0.54 -11.31 15.02 5.56 0.08 -11.23 16 15 C -0.15 -1.80 5.23 -27.88 -0.15 -1.94 16 16 C 0.26 3.32 1.94 -69.08 -0.13 3.19 16 17 H 0.11 1.80 7.39 -51.93 -0.38 1.42 16 18 N -0.73 -9.30 4.06 -59.81 -0.24 -9.55 16 19 C 0.72 10.50 8.80 -86.91 -0.76 9.74 16 20 N -0.87 -9.01 8.88 27.64 0.25 -8.76 16 21 O -0.59 -11.14 16.88 5.28 0.09 -11.05 16 22 C -0.18 -2.09 5.39 -36.00 -0.19 -2.29 16 23 C -0.13 -1.44 10.03 -41.21 -0.41 -1.85 16 24 C -0.13 -1.29 10.18 -41.21 -0.42 -1.71 16 25 C -0.22 -2.05 11.23 29.04 0.33 -1.73 16 26 S 0.10 1.01 23.17 -107.50 -2.49 -1.48 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.40 6.31 8.54 -40.82 -0.35 5.96 16 32 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.40 4.25 8.63 -40.82 -0.35 3.90 16 35 H 0.40 3.02 8.85 -40.82 -0.36 2.66 16 36 H 0.41 3.76 8.93 -40.82 -0.36 3.39 16 37 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -34.95 343.50 -7.73 -42.69 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.88 Total: 13.60 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.06 Total: 1.57 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.50 Total: -56.67 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.17 Total: -22.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.39 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.95 -7.73 -42.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299438404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.939 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds