Wall clock time and date at job start Fri Apr 10 2020 22:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47283 * 2 1 4 4 C 1.50699 * 109.46840 * 239.99367 * 2 1 3 5 5 O 1.21276 * 120.00469 * 325.38626 * 4 2 1 6 6 N 1.34778 * 119.99738 * 145.11346 * 4 2 1 7 7 C 1.47072 * 136.05566 * 4.65511 * 6 4 2 8 8 C 1.53238 * 88.08045 * 207.20244 * 7 6 4 9 9 O 1.42894 * 114.19965 * 87.72663 * 8 7 6 10 10 C 1.50700 * 114.32610 * 220.47276 * 8 7 6 11 11 H 1.07998 * 120.00590 * 93.75762 * 10 8 7 12 12 C 1.37881 * 119.99470 * 273.75713 * 10 8 7 13 13 N 1.31506 * 120.00189 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99781 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47099 * 90.00036 * 14 12 10 16 16 H 1.48500 * 109.47215 * 209.99893 * 14 12 10 17 17 H 1.48503 * 109.47274 * 330.00335 * 14 12 10 18 18 C 1.47064 * 136.05839 * 185.01777 * 6 4 2 19 19 C 1.50706 * 109.46834 * 119.99708 * 2 1 3 20 20 C 1.38257 * 119.96035 * 239.99615 * 19 2 1 21 21 C 1.38217 * 120.06915 * 180.02562 * 20 19 2 22 22 C 1.38413 * 120.00129 * 0.02562 * 21 20 19 23 23 F 1.35093 * 120.03829 * 180.02562 * 22 21 20 24 24 C 1.38659 * 119.92749 * 359.97438 * 22 21 20 25 25 F 1.35098 * 120.03620 * 180.02562 * 24 22 21 26 26 C 1.38209 * 119.96756 * 59.72695 * 19 2 1 27 27 H 1.08998 * 109.47259 * 64.91916 * 1 2 3 28 28 H 1.09000 * 109.46963 * 184.92413 * 1 2 3 29 29 H 1.09001 * 109.47009 * 304.91773 * 1 2 3 30 30 H 1.08996 * 113.46857 * 321.93271 * 7 6 4 31 31 H 1.08994 * 113.46702 * 92.37338 * 7 6 4 32 32 H 0.96702 * 113.99844 * 86.29898 * 9 8 7 33 33 H 0.97010 * 120.00024 * 180.02562 * 13 12 10 34 34 H 1.08996 * 113.47088 * 267.62887 * 18 6 4 35 35 H 1.09004 * 113.46711 * 38.01428 * 18 6 4 36 36 H 1.07992 * 119.97085 * 359.97438 * 20 19 2 37 37 H 1.07998 * 120.00170 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.99989 * 359.97438 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 1.4195 -1.6572 -1.6767 6 7 3.1596 -0.2905 -1.8381 7 6 4.1897 0.7253 -1.5737 8 6 4.4349 0.7957 -3.0846 9 8 3.5939 1.7242 -3.7720 10 6 5.8867 0.9061 -3.4735 11 1 6.4529 0.0162 -3.7052 12 6 6.4920 2.1435 -3.5333 13 7 5.8027 3.2271 -3.2505 14 14 8.2918 2.2805 -4.0145 15 1 8.4001 2.4321 -5.4878 16 1 8.8933 3.4643 -3.3496 17 1 9.0128 1.0540 -3.5888 18 6 3.8975 -0.6420 -3.0607 19 6 2.0323 -0.7104 1.2306 20 6 2.8271 -0.0377 2.1401 21 6 3.2895 -0.6872 3.2691 22 6 2.9572 -2.0126 3.4900 23 9 3.4083 -2.6479 4.5936 24 6 2.1601 -2.6872 2.5778 25 9 1.8340 -3.9807 2.7915 26 6 1.6933 -2.0319 1.4515 27 1 -0.3634 0.4356 -0.9307 28 1 -0.3633 -1.0239 0.0882 29 1 -0.3633 0.5882 0.8427 30 1 3.7906 1.6499 -1.1567 31 1 5.0424 0.3430 -1.0128 32 1 3.9352 2.6288 -3.7852 33 1 6.2285 4.0978 -3.2930 34 1 4.6717 -1.3922 -2.8999 35 1 3.2504 -0.8786 -3.9054 36 1 3.0878 0.9961 1.9678 37 1 3.9106 -0.1608 3.9787 38 1 1.0683 -2.5549 0.7427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335974258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:02 Heat of formation + Delta-G solvation = -115.928970 kcal Electronic energy + Delta-G solvation = -25742.782632 eV Core-core repulsion = 21608.540760 eV Total energy + Delta-G solvation = -4134.241872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.55609 -48.63137 -40.22062 -39.03210 -37.49036 -34.08254 -33.82983 -32.25351 -30.97017 -29.31508 -28.80320 -25.80156 -25.20418 -24.20020 -23.27625 -21.99675 -20.01866 -18.44840 -18.00173 -17.60131 -17.35821 -16.93345 -16.41453 -16.28205 -15.53554 -15.15714 -15.05417 -14.99330 -14.59014 -14.29491 -14.17906 -13.97258 -13.54290 -13.16556 -12.96916 -12.80242 -12.64546 -12.30335 -11.96916 -11.83220 -11.74403 -11.61877 -11.32297 -11.20786 -11.11641 -11.04276 -10.53156 -10.32374 -9.73715 -9.34340 -9.17386 -8.85558 -8.71178 -8.44833 -7.93963 -6.46765 -4.56891 0.72550 0.85616 2.97524 3.10810 3.18169 3.19662 3.22649 3.48992 3.64732 4.13218 4.19894 4.38246 4.48475 4.73675 4.81009 4.90310 4.98409 5.12084 5.30965 5.49517 5.55721 5.68369 5.71095 5.76373 5.82147 5.86001 5.93318 6.11076 6.12037 6.29235 6.32423 6.42764 6.53835 6.59638 6.61333 7.04145 7.56913 7.74013 8.40577 8.47267 8.64400 9.14801 9.41814 10.59976 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.003801 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.332971 B = 7364.184177 C = 8166.608231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 H 0.103 0.897 4 C 0.543 3.457 5 O -0.559 6.559 6 N -0.631 5.631 7 C 0.073 3.927 8 C 0.240 3.760 9 O -0.572 6.572 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.899 5.899 14 Si 0.908 3.092 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.106 3.894 19 C -0.050 4.050 20 C -0.089 4.089 21 C -0.124 4.124 22 C 0.062 3.938 23 F -0.131 7.131 24 C 0.068 3.932 25 F -0.130 7.130 26 C -0.112 4.112 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.394 0.606 33 H 0.274 0.726 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.102 -2.562 11.561 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 H 0.121 0.879 4 C 0.331 3.669 5 O -0.439 6.439 6 N -0.363 5.363 7 C -0.050 4.050 8 C 0.198 3.802 9 O -0.385 6.385 10 C -0.572 4.572 11 H 0.091 0.909 12 C -0.129 4.129 13 N -0.539 5.539 14 Si 0.735 3.265 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.016 4.016 19 C -0.051 4.051 20 C -0.107 4.107 21 C -0.142 4.142 22 C 0.042 3.958 23 F -0.110 7.110 24 C 0.048 3.952 25 F -0.108 7.108 26 C -0.130 4.130 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.954 -3.519 11.406 13.339 hybrid contribution 1.424 0.305 0.239 1.476 sum -4.530 -3.215 11.644 12.901 Atomic orbital electron populations 1.21673 0.91353 1.03211 1.02540 1.20227 0.98175 1.00180 0.90157 0.87886 1.19707 0.79963 0.83357 0.83854 1.90634 1.58050 1.28864 1.66365 1.49756 1.21622 1.38602 1.26353 1.24180 0.87657 0.89495 1.03716 1.19489 0.88885 0.85424 0.86411 1.86044 1.50430 1.24596 1.77399 1.21434 0.94162 0.93823 1.47776 0.90934 1.25061 0.99330 0.95322 0.93214 1.69253 1.37438 0.98707 1.48535 0.86321 0.83264 0.77980 0.78930 1.20195 1.20870 1.19518 1.23350 0.93146 0.99342 0.85751 1.19442 0.97033 0.93173 0.95476 1.21078 0.96095 1.00932 0.92618 1.21050 1.01626 0.92038 0.99527 1.17710 1.00376 0.92172 0.85547 1.91515 1.87402 1.81915 1.50165 1.17627 1.01064 0.79867 0.96658 1.91524 1.91054 1.33497 1.94730 1.21103 1.00919 0.95003 0.96014 0.91474 0.91383 0.91686 0.91708 0.89982 0.74930 0.91543 0.89725 0.91501 0.83774 0.83452 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.65 37.16 0.32 -1.29 16 2 C -0.07 -0.93 2.79 -92.92 -0.26 -1.19 16 3 H 0.10 1.35 7.33 -51.93 -0.38 0.97 16 4 C 0.54 10.19 6.73 -10.99 -0.07 10.11 16 5 O -0.56 -11.93 16.65 5.56 0.09 -11.83 16 6 N -0.63 -12.59 3.69 -185.37 -0.68 -13.27 16 7 C 0.07 1.45 7.66 -8.63 -0.07 1.38 16 8 C 0.24 5.48 1.57 -91.39 -0.14 5.34 16 9 O -0.57 -14.08 13.54 -35.23 -0.48 -14.56 16 10 C -0.53 -12.84 8.69 -34.44 -0.30 -13.14 16 11 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 13 N -0.90 -21.74 11.01 55.43 0.61 -21.13 16 14 Si 0.91 18.76 29.54 -169.99 -5.02 13.74 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 C 0.11 2.24 8.04 -8.50 -0.07 2.17 16 19 C -0.05 -0.65 4.77 -104.62 -0.50 -1.15 16 20 C -0.09 -0.97 9.67 -39.58 -0.38 -1.35 16 21 C -0.12 -1.30 10.02 -39.52 -0.40 -1.70 16 22 C 0.06 0.78 7.31 -39.36 -0.29 0.49 16 23 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 24 C 0.07 0.93 7.31 -39.36 -0.29 0.64 16 25 F -0.13 -1.87 17.18 2.25 0.04 -1.83 16 26 C -0.11 -1.52 8.72 -39.53 -0.34 -1.87 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.86 7.08 -51.93 -0.37 0.49 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.25 7.84 -51.93 -0.41 0.84 16 31 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 32 H 0.39 9.80 6.33 45.56 0.29 10.09 16 33 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 34 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.14 1.28 7.94 -52.49 -0.42 0.87 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.15 2.16 7.07 -52.48 -0.37 1.79 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -27.25 335.84 -6.96 -34.20 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -3.73 Total: 11.21 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.88 Total: 0.09 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.07 Total: -34.40 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.38 Total: -26.39 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.25 -6.96 -34.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335974258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.726 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds