Wall clock time and date at job start Fri Apr 10 2020 22:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39810 * 120.07328 * 265.36681 * 3 2 1 5 5 C 1.37655 * 119.92492 * 180.02562 * 4 3 2 6 6 C 1.39177 * 120.07300 * 359.97438 * 5 4 3 7 7 N 1.39186 * 119.92290 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99657 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46721 * 179.97438 * 8 7 6 10 10 O 1.21296 * 119.99942 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.40585 * 119.99909 * 179.97438 * 11 9 8 13 13 C 1.40645 * 126.08375 * 0.02562 * 12 11 9 14 14 N 1.30914 * 108.39140 * 179.71485 * 13 12 11 15 15 N 1.40076 * 108.40071 * 0.44717 * 14 13 12 16 16 C 1.37323 * 126.06590 * 179.81421 * 15 14 13 17 17 H 1.08002 * 119.99553 * 179.68479 * 16 15 14 18 18 C 1.38981 * 119.99998 * 359.96616 * 16 15 14 19 19 N 1.31294 * 120.00080 * 359.72332 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 179.72367 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47061 * 120.00095 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99636 * 20 18 16 24 24 C 1.35687 * 126.08190 * 180.02562 * 12 11 9 25 25 C 1.39183 * 120.15241 * 0.27284 * 6 5 4 26 26 C 1.37658 * 120.07106 * 359.44956 * 25 6 5 27 27 H 1.07999 * 120.03838 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.96315 * 179.97438 * 5 4 3 29 29 H 0.96997 * 120.00021 * 359.97438 * 7 6 5 30 30 H 1.09000 * 109.46967 * 60.00275 * 8 7 6 31 31 H 1.08999 * 109.47396 * 299.99626 * 8 7 6 32 32 H 0.97006 * 119.99896 * 0.02562 * 11 9 8 33 33 H 1.07999 * 125.80550 * 0.02609 * 13 12 11 34 34 H 0.97009 * 120.00129 * 180.02562 * 19 18 16 35 35 H 1.07999 * 126.24701 * 0.03361 * 24 12 11 36 36 H 1.07990 * 119.96357 * 179.70821 * 25 6 5 37 37 H 1.07995 * 120.03310 * 180.27723 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2685 0.0987 1.2059 5 6 4.6450 0.0995 1.2023 6 6 5.3394 0.0024 0.0001 7 7 6.7312 0.0030 0.0001 8 6 7.4638 -0.0997 -1.2645 9 6 8.9455 -0.0760 -0.9900 10 8 9.3497 0.0179 0.1498 11 7 9.8213 -0.1592 -2.0110 12 6 11.2035 -0.1366 -1.7550 13 6 11.8101 -0.0322 -0.4904 14 7 13.1091 -0.0502 -0.6527 15 7 13.3822 -0.1560 -2.0225 16 6 14.6285 -0.2016 -2.5972 17 1 14.7259 -0.2894 -3.6692 18 6 15.7645 -0.1407 -1.7988 19 7 15.6461 -0.0340 -0.4956 20 14 17.4599 -0.2106 -2.5800 21 1 17.3213 -0.3308 -4.0536 22 1 18.2075 1.0300 -2.2522 23 1 18.1987 -1.3869 -2.0552 24 6 12.1896 -0.2116 -2.6840 25 6 4.6451 -0.0902 -1.2027 26 6 3.2686 -0.0973 -1.2058 27 1 2.7303 0.1745 2.1392 28 1 5.1868 0.1757 2.1335 29 1 7.2162 0.0715 0.8374 30 1 7.2001 0.7409 -1.9064 31 1 7.2009 -1.0333 -1.7619 32 1 9.4980 -0.2340 -2.9225 33 1 11.2924 0.0443 0.4543 34 1 16.4390 0.0089 0.0616 35 1 12.0554 -0.2989 -3.7521 36 1 5.1870 -0.1606 -2.1342 37 1 2.7306 -0.1737 -2.1390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726943331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:04 Heat of formation + Delta-G solvation = 87.113897 kcal Electronic energy + Delta-G solvation = -22858.801777 eV Core-core repulsion = 19216.346442 eV Total energy + Delta-G solvation = -3642.455335 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72129 -40.71360 -40.00841 -37.68350 -36.19277 -35.77114 -34.96500 -32.28928 -31.99963 -31.27422 -29.76176 -27.91206 -26.51316 -23.90522 -23.53601 -22.81317 -21.74142 -21.17636 -19.70779 -19.42957 -18.65968 -17.62047 -17.35283 -16.85680 -16.65380 -16.51474 -15.70633 -15.39263 -15.33888 -15.20013 -14.94829 -14.77845 -14.53397 -14.35677 -14.28825 -14.02992 -13.58341 -13.46928 -13.27615 -13.11712 -12.90919 -12.88912 -12.82957 -12.02331 -11.85171 -11.80639 -11.04681 -11.00491 -10.84080 -10.71511 -10.08676 -9.88939 -8.51984 -8.45936 -8.38258 -6.22949 0.12843 0.58211 1.21834 1.41304 1.51292 1.59769 1.78120 1.88355 1.92194 2.11917 2.18192 2.54437 2.63456 2.93558 3.10247 3.10735 3.14803 3.82019 3.99626 4.09714 4.39087 4.45951 4.48299 4.49102 4.63319 4.63803 4.75993 5.02430 5.08745 5.14700 5.26978 5.32086 5.38240 5.48283 5.57499 5.79884 5.98007 6.27280 6.35170 6.62022 6.66500 6.76015 6.79509 7.38255 7.49070 7.71050 8.53593 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.066644 B = 0.001903 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.044560 B =14713.297869 C =15118.189833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.289 3.711 3 C -0.120 4.120 4 C -0.015 4.015 5 C -0.207 4.207 6 C 0.248 3.752 7 N -0.729 5.729 8 C 0.116 3.884 9 C 0.490 3.510 10 O -0.577 6.577 11 N -0.609 5.609 12 C -0.045 4.045 13 C -0.058 4.058 14 N -0.314 5.314 15 N -0.171 5.171 16 C -0.354 4.354 17 H 0.142 0.858 18 C -0.007 4.007 19 N -0.826 5.826 20 Si 1.017 2.983 21 H -0.240 1.240 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.077 4.077 25 C -0.205 4.205 26 C -0.011 4.011 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.408 0.592 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.425 0.575 33 H 0.168 0.832 34 H 0.275 0.725 35 H 0.190 0.810 36 H 0.157 0.843 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.104 -0.522 -6.244 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.024 4.024 3 C -0.126 4.126 4 C -0.036 4.036 5 C -0.230 4.230 6 C 0.140 3.860 7 N -0.357 5.357 8 C -0.011 4.011 9 C 0.278 3.722 10 O -0.456 6.456 11 N -0.255 5.255 12 C -0.152 4.152 13 C -0.234 4.234 14 N -0.146 5.146 15 N 0.060 4.940 16 C -0.485 4.485 17 H 0.159 0.841 18 C -0.218 4.218 19 N -0.454 5.454 20 Si 0.836 3.164 21 H -0.162 1.162 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.228 4.228 25 C -0.227 4.227 26 C -0.032 4.032 27 H 0.159 0.841 28 H 0.155 0.845 29 H 0.246 0.754 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.263 0.737 33 H 0.185 0.815 34 H 0.085 0.915 35 H 0.207 0.793 36 H 0.175 0.825 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.204 -0.414 -4.875 17.886 hybrid contribution 0.546 -0.016 -0.123 0.560 sum -16.658 -0.430 -4.998 17.397 Atomic orbital electron populations 1.81262 1.13726 1.12875 1.09210 1.26039 0.92876 0.91445 0.92036 1.15894 0.82987 1.17754 0.95992 1.20968 0.93255 0.92539 0.96872 1.20658 0.93924 1.11111 0.97291 1.18220 0.82790 0.90130 0.94816 1.44585 1.02900 1.79096 1.09153 1.21203 0.85133 1.06618 0.88119 1.21211 0.89750 0.76687 0.84549 1.90604 1.80086 1.51390 1.23546 1.42303 1.01841 1.70593 1.10726 1.17298 0.84093 1.21157 0.92622 1.24193 0.91531 1.09069 0.98597 1.78165 1.14435 1.27233 0.94748 1.44840 1.05129 1.40402 1.03596 1.20645 0.79603 1.53569 0.94663 0.84101 1.26845 1.05186 0.94235 0.95552 1.70402 1.31867 1.37481 1.05689 0.84560 0.74133 0.78105 0.79571 1.16238 1.19919 1.19948 1.22060 0.84519 1.17465 0.98723 1.20824 0.93801 1.10863 0.97242 1.21082 0.93565 0.91864 0.96689 0.84075 0.84514 0.75409 0.85627 0.85621 0.73715 0.81471 0.91501 0.79324 0.82535 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.99 18.54 19.00 0.35 -11.64 16 2 C 0.29 5.41 15.33 88.33 1.35 6.76 16 3 C -0.12 -1.66 5.74 -21.28 -0.12 -1.78 16 4 C -0.02 -0.19 9.75 22.51 0.22 0.03 16 5 C -0.21 -2.75 9.87 22.36 0.22 -2.53 16 6 C 0.25 3.35 6.65 38.43 0.26 3.60 16 7 N -0.73 -11.58 5.68 -343.07 -1.95 -13.53 16 8 C 0.12 1.54 5.38 85.63 0.46 2.00 16 9 C 0.49 12.77 7.87 87.66 0.69 13.46 16 10 O -0.58 -20.92 12.82 -3.08 -0.04 -20.96 16 11 N -0.61 -16.57 5.47 -303.93 -1.66 -18.23 16 12 C -0.05 -1.88 6.90 37.73 0.26 -1.62 16 13 C -0.06 -2.99 10.85 85.42 0.93 -2.06 16 14 N -0.31 -18.27 10.40 -56.47 -0.59 -18.86 16 15 N -0.17 -9.08 3.74 -190.01 -0.71 -9.79 16 16 C -0.35 -18.11 10.25 84.01 0.86 -17.25 16 17 H 0.14 6.20 7.83 -2.91 -0.02 6.18 16 18 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 19 N -0.83 -46.87 11.81 21.66 0.26 -46.62 16 20 Si 1.02 37.57 29.55 68.60 2.03 39.60 16 21 H -0.24 -7.85 7.11 99.48 0.71 -7.14 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 C -0.08 -3.29 11.49 83.38 0.96 -2.33 16 25 C -0.20 -2.02 9.28 22.36 0.21 -1.81 16 26 C -0.01 -0.11 9.75 22.51 0.22 0.11 16 27 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.41 8.13 7.44 -92.71 -0.69 7.44 16 30 H 0.13 0.94 7.92 -2.39 -0.02 0.92 16 31 H 0.13 0.94 7.95 -2.39 -0.02 0.92 16 32 H 0.42 7.13 8.83 -92.70 -0.82 6.31 16 33 H 0.17 8.61 5.92 -2.91 -0.02 8.60 16 34 H 0.28 14.36 8.31 -92.70 -0.77 13.59 16 35 H 0.19 6.12 8.06 -2.91 -0.02 6.10 16 36 H 0.16 0.73 6.70 -2.92 -0.02 0.71 16 37 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -78.77 337.05 4.32 -74.45 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.35 Total: 28.88 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 6.98 Total: -3.30 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -4.30 Total: -118.67 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.04 Total: -20.96 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -78.77 4.32 -74.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726943331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.566 kcal (2) G-P(sol) polarization free energy of solvation -78.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds