Wall clock time and date at job start Fri Apr 10 2020 22:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30470 * 125.84744 * 2 1 4 4 C 1.34215 * 109.83040 * 179.97438 * 3 2 1 5 5 C 1.47711 * 125.64508 * 180.02562 * 4 3 2 6 6 O 1.21602 * 119.99752 * 175.45025 * 5 4 3 7 7 N 1.34779 * 119.99749 * 355.44352 * 5 4 3 8 8 C 1.36863 * 119.99314 * 183.86004 * 7 5 4 9 9 H 1.07995 * 120.00356 * 319.98747 * 8 7 5 10 10 C 1.39047 * 119.99796 * 139.99290 * 8 7 5 11 11 N 1.31367 * 120.00225 * 163.59430 * 10 8 7 12 12 Si 1.86803 * 119.99717 * 343.58651 * 10 8 7 13 13 H 1.48496 * 109.47167 * 90.96475 * 12 10 8 14 14 H 1.48501 * 109.46904 * 210.96313 * 12 10 8 15 15 H 1.48503 * 109.47370 * 330.96069 * 12 10 8 16 16 C 1.46498 * 120.00034 * 3.86141 * 7 5 4 17 17 C 1.47202 * 109.47030 * 83.78967 * 16 7 5 18 18 N 4.47404 * 100.24429 * 32.10578 * 2 1 3 19 19 N 1.31802 * 108.70491 * 359.75538 * 4 3 2 20 20 N 1.35066 * 125.84364 * 180.02562 * 2 1 3 21 21 C 1.40131 * 126.76059 * 359.96188 * 20 2 1 22 22 C 1.38857 * 120.07156 * 144.99831 * 21 20 2 23 23 C 1.38108 * 119.93503 * 179.97438 * 22 21 20 24 24 C 1.38287 * 120.06382 * 359.97438 * 23 22 21 25 25 C 1.38280 * 120.14273 * 0.02562 * 24 23 22 26 26 C 1.38115 * 120.06325 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46899 * 269.99769 * 1 2 3 28 28 H 1.08993 * 109.47431 * 29.99379 * 1 2 3 29 29 H 1.09002 * 109.47132 * 150.00235 * 1 2 3 30 30 H 0.96998 * 119.99708 * 179.97438 * 11 10 8 31 31 H 1.09005 * 109.46591 * 203.78280 * 16 7 5 32 32 H 1.08994 * 109.47575 * 323.78704 * 16 7 5 33 33 H 1.07999 * 120.02801 * 0.02562 * 22 21 20 34 34 H 1.07993 * 119.96986 * 180.02562 * 23 22 21 35 35 H 1.08001 * 119.92725 * 179.74618 * 24 23 22 36 36 H 1.07996 * 119.97097 * 179.97438 * 25 24 23 37 37 H 1.08006 * 120.03191 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2711 1.0576 0.0000 4 6 3.5611 0.6872 0.0006 5 6 4.7197 1.6035 0.0013 6 8 5.8477 1.1571 0.0853 7 7 4.5265 2.9341 -0.0913 8 6 5.6014 3.7777 -0.1703 9 1 6.4789 3.5920 0.4312 10 6 5.5636 4.8738 -1.0249 11 7 6.4288 5.8513 -0.8782 12 14 4.2824 4.9564 -2.3818 13 1 3.0697 5.6485 -1.8763 14 1 4.8342 5.7063 -3.5387 15 1 3.9247 3.5799 -2.8094 16 6 3.1661 3.4775 -0.1074 17 6 2.6782 3.6196 1.2741 18 7 2.3027 3.7294 2.3400 19 7 3.6229 -0.6293 0.0063 20 7 2.2979 -1.0949 -0.0005 21 6 1.8790 -2.4321 -0.0003 22 6 2.6099 -3.3903 -0.6901 23 6 2.1947 -4.7075 -0.6876 24 6 1.0526 -5.0726 0.0013 25 6 0.3225 -4.1208 0.6892 26 6 0.7320 -2.8017 0.6896 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 6.4026 6.6158 -1.4747 31 1 3.1704 4.4532 -0.5934 32 1 2.5111 2.8010 -0.6563 33 1 3.5026 -3.1059 -1.2272 34 1 2.7629 -5.4533 -1.2235 35 1 0.7276 -6.1025 -0.0016 36 1 -0.5693 -4.4089 1.2259 37 1 0.1616 -2.0588 1.2273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731623383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:06 Heat of formation + Delta-G solvation = 128.418253 kcal Electronic energy + Delta-G solvation = -24840.828115 eV Core-core repulsion = 21200.163872 eV Total energy + Delta-G solvation = -3640.664244 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.64153 -40.86665 -40.04060 -37.99269 -36.58731 -35.44195 -34.24846 -33.95947 -31.97294 -30.83641 -29.46021 -29.26592 -27.93502 -25.10509 -24.04463 -23.11977 -21.72506 -21.03204 -20.35820 -19.31967 -18.46153 -17.92890 -17.57525 -17.33169 -17.15401 -16.24387 -15.99169 -15.62562 -15.42127 -15.26435 -15.04757 -14.67796 -14.56540 -14.46698 -14.20946 -14.07239 -13.78644 -13.57801 -13.55837 -13.35276 -13.00190 -12.82346 -12.57867 -12.25705 -12.18409 -11.84199 -11.67048 -11.38845 -11.19108 -10.93211 -10.90120 -10.09990 -10.05115 -9.58847 -8.57311 -6.34006 -0.44724 0.29209 0.38482 0.89915 1.04683 1.23664 1.36861 1.49368 1.50547 1.80047 2.14445 2.16730 2.25823 2.65913 2.79661 2.89353 3.19919 3.39389 3.51147 3.85162 3.88717 4.06443 4.18988 4.20712 4.37442 4.42104 4.49213 4.59537 4.60617 4.72551 4.92792 4.99619 5.04186 5.29267 5.33518 5.36874 5.46908 5.69627 5.88418 5.98449 6.22318 6.51008 6.56958 6.69694 6.97819 7.44702 8.57644 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.003938 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.516283 B = 7109.177884 C = 7547.605461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.291 3.709 3 N -0.534 5.534 4 C 0.194 3.806 5 C 0.547 3.453 6 O -0.574 6.574 7 N -0.437 5.437 8 C -0.348 4.348 9 H 0.056 0.944 10 C 0.024 3.976 11 N -0.893 5.893 12 Si 0.930 3.070 13 H -0.217 1.217 14 H -0.273 1.273 15 H -0.247 1.247 16 C 0.171 3.829 17 C 0.237 3.763 18 N -0.468 5.468 19 N -0.287 5.287 20 N -0.328 5.328 21 C 0.105 3.895 22 C -0.127 4.127 23 C -0.103 4.103 24 C -0.106 4.106 25 C -0.091 4.091 26 C -0.121 4.121 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.289 0.711 31 H 0.117 0.883 32 H 0.171 0.829 33 H 0.109 0.891 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.906 -19.410 -3.957 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 N -0.265 5.265 4 C -0.088 4.088 5 C 0.333 3.667 6 O -0.453 6.453 7 N -0.159 5.159 8 C -0.475 4.475 9 H 0.074 0.926 10 C -0.181 4.181 11 N -0.528 5.528 12 Si 0.750 3.250 13 H -0.141 1.141 14 H -0.199 1.199 15 H -0.170 1.170 16 C 0.046 3.954 17 C -0.081 4.081 18 N -0.148 5.148 19 N -0.117 5.117 20 N -0.114 5.114 21 C 0.015 3.985 22 C -0.147 4.147 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.142 4.142 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.188 0.812 33 H 0.127 0.873 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.184 -19.337 -2.378 29.525 hybrid contribution 1.099 0.480 -0.710 1.393 sum -21.085 -18.857 -3.088 28.456 Atomic orbital electron populations 1.20987 0.78694 1.07514 1.06705 1.25737 0.98805 0.80529 0.93100 1.70518 0.99831 1.29577 1.26537 1.23790 0.92659 0.90518 1.01878 1.16980 0.85442 0.81864 0.82423 1.90681 1.24670 1.76353 1.53623 1.43239 1.05531 1.03178 1.63932 1.18720 0.96266 1.06392 1.26158 0.92582 1.26254 0.99927 0.93433 0.98483 1.69758 1.37885 1.07578 1.37551 0.86131 0.79602 0.80881 0.78424 1.14133 1.19884 1.17019 1.20250 0.84732 1.03931 0.86469 1.29612 0.92004 0.91154 0.95320 1.80955 1.10668 1.11008 1.12129 1.78530 0.97901 1.10997 1.24279 1.47979 1.03141 1.06849 1.53460 1.18008 0.98471 0.79182 1.02862 1.21146 0.99964 0.94180 0.99429 1.21386 0.97506 0.94086 0.99160 1.21779 0.93745 1.01712 0.95168 1.21500 1.00817 0.90490 0.98149 1.21403 0.95107 0.99212 0.98454 0.86352 0.86253 0.86836 0.90097 0.86541 0.81202 0.87276 0.83051 0.81769 0.81016 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 8.69 71.24 0.62 -0.37 16 2 C 0.29 7.81 7.81 138.13 1.08 8.89 16 3 N -0.53 -18.75 6.89 -181.03 -1.25 -20.00 16 4 C 0.19 8.58 7.63 137.10 1.05 9.62 16 5 C 0.55 28.95 7.56 86.75 0.66 29.60 16 6 O -0.57 -35.05 16.96 -4.04 -0.07 -35.11 16 7 N -0.44 -22.33 2.14 -648.86 -1.39 -23.72 16 8 C -0.35 -20.37 9.38 84.10 0.79 -19.58 16 9 H 0.06 3.83 7.92 -2.91 -0.02 3.81 16 10 C 0.02 1.32 5.35 84.96 0.45 1.78 16 11 N -0.89 -51.06 13.95 21.68 0.30 -50.75 16 12 Si 0.93 37.72 24.91 68.60 1.71 39.43 16 13 H -0.22 -7.26 6.56 99.48 0.65 -6.60 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 16 C 0.17 6.96 4.03 84.57 0.34 7.30 16 17 C 0.24 9.94 14.77 89.45 1.32 11.26 16 18 N -0.47 -20.35 18.53 20.00 0.37 -19.98 16 19 N -0.29 -12.07 12.51 -52.60 -0.66 -12.73 16 20 N -0.33 -10.05 3.75 -179.34 -0.67 -10.72 16 21 C 0.11 2.42 6.30 38.11 0.24 2.66 16 22 C -0.13 -2.83 9.80 22.39 0.22 -2.61 16 23 C -0.10 -1.43 10.04 22.25 0.22 -1.21 16 24 C -0.11 -0.92 10.04 22.29 0.22 -0.69 16 25 C -0.09 -0.76 10.04 22.25 0.22 -0.54 16 26 C -0.12 -1.70 8.32 22.39 0.19 -1.51 16 27 H 0.12 0.99 7.77 -2.39 -0.02 0.98 16 28 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 0.84 6.91 -2.39 -0.02 0.82 16 30 H 0.29 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.12 4.49 3.37 -2.38 -0.01 4.48 16 32 H 0.17 5.99 5.23 -2.39 -0.01 5.98 16 33 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.16 0.34 8.06 -2.91 -0.02 0.31 16 36 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 37 H 0.15 1.50 6.15 -2.91 -0.02 1.48 16 Total: -1.00 -84.19 326.21 7.06 -77.13 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.09 Total: 11.87 kcal Atomic # 6 Polarization: 36.97 SS G_CDS: 7.62 Total: 44.59 kcal Atomic # 7 Polarization: -134.61 SS G_CDS: -3.29 Total: -137.90 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.07 Total: -35.11 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.71 Total: 39.43 kcal Total: -84.19 7.06 -77.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731623383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.548 kcal (2) G-P(sol) polarization free energy of solvation -84.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds