Wall clock time and date at job start Fri Apr 10 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38507 * 119.99921 * 179.97438 * 15 14 13 17 17 N 1.31825 * 120.27972 * 0.02562 * 16 15 14 18 18 C 1.33752 * 121.29807 * 179.97438 * 17 16 15 19 19 C 1.34758 * 121.43339 * 0.02562 * 18 17 16 20 20 N 1.36989 * 119.84203 * 359.97438 * 19 18 17 21 21 C 1.34772 * 134.70573 * 179.97438 * 20 19 18 22 22 N 1.31082 * 107.59452 * 180.02562 * 21 20 19 23 23 N 1.28792 * 110.14657 * 0.02562 * 22 21 20 24 24 C 1.31896 * 109.30684 * 359.72580 * 23 22 21 25 25 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 26 26 C 1.38101 * 120.07230 * 0.04164 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 30 30 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 31 31 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 32 32 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 33 33 H 1.07992 * 119.27968 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.07976 * 179.97438 * 19 18 17 35 35 H 1.07996 * 126.21028 * 0.02861 * 21 20 19 36 36 H 1.07999 * 119.96698 * 180.02562 * 25 13 12 37 37 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3792 -8.7877 1.0373 17 7 5.8502 -9.4126 -0.0235 18 6 6.5637 -10.5379 0.0928 19 6 6.8302 -11.0797 1.2975 20 7 6.3663 -10.4738 2.4351 21 6 6.4494 -10.7418 3.7534 22 7 5.8017 -9.7974 4.3912 23 7 5.3144 -8.9497 3.5530 24 6 5.6368 -9.3141 2.3270 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0951 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8451 -0.4339 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 4.2983 -7.1670 1.6758 33 1 6.9335 -11.0233 -0.7982 34 1 7.4082 -11.9895 1.3660 35 1 6.9575 -11.5821 4.2028 36 1 5.2812 -4.5470 -0.1947 37 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743461931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:11 Heat of formation + Delta-G solvation = 110.171832 kcal Electronic energy + Delta-G solvation = -23500.171811 eV Core-core repulsion = 19858.716344 eV Total energy + Delta-G solvation = -3641.455468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.73236 -40.89968 -40.19975 -38.72748 -37.17867 -34.85525 -34.27216 -32.61686 -31.83670 -31.25903 -30.09490 -27.69835 -26.55304 -25.13051 -24.72742 -23.66008 -23.20558 -22.16838 -20.13236 -19.86357 -19.06265 -18.79161 -17.91260 -17.79409 -16.92780 -16.52609 -16.32676 -15.90508 -15.63635 -15.44951 -15.36293 -15.25099 -14.87862 -14.57084 -14.38172 -14.15900 -13.74953 -13.52417 -13.04252 -12.92610 -12.91428 -12.55097 -12.35164 -12.23587 -12.09334 -11.83017 -11.24670 -11.15806 -10.91972 -10.80749 -10.40574 -9.81951 -9.03712 -8.58509 -8.49550 -6.17746 -0.27578 0.09357 0.49810 0.57347 1.24390 1.35099 1.42783 1.53180 1.64653 2.07671 2.16282 2.50280 2.78711 2.84712 3.14818 3.27170 3.47507 3.58827 3.81320 3.87905 4.03245 4.07073 4.16790 4.37850 4.47977 4.55870 4.57995 4.73767 4.80905 4.86661 5.03644 5.12315 5.13713 5.25802 5.50763 5.68189 5.73764 5.76995 5.91902 6.00634 6.11657 6.16653 6.95330 6.96828 7.31765 7.74580 8.73611 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.002410 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.809673 B =11616.569394 C =11939.940910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.207 4.207 12 C -0.042 4.042 13 C -0.188 4.188 14 C 0.199 3.801 15 N -0.680 5.680 16 C 0.473 3.527 17 N -0.556 5.556 18 C 0.102 3.898 19 C -0.071 4.071 20 N -0.357 5.357 21 C 0.149 3.851 22 N -0.305 5.305 23 N -0.295 5.295 24 C 0.094 3.906 25 C -0.044 4.044 26 C -0.246 4.246 27 H 0.273 0.727 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.417 0.583 33 H 0.218 0.782 34 H 0.220 0.780 35 H 0.279 0.721 36 H 0.140 0.860 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.344 -24.399 -0.579 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.226 4.226 12 C -0.060 4.060 13 C -0.189 4.189 14 C 0.077 3.923 15 N -0.311 5.311 16 C 0.212 3.788 17 N -0.284 5.284 18 C -0.038 4.038 19 C -0.195 4.195 20 N -0.037 5.037 21 C -0.135 4.135 22 N -0.147 5.147 23 N -0.145 5.145 24 C -0.164 4.164 25 C -0.062 4.062 26 C -0.265 4.265 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.254 0.746 33 H 0.234 0.766 34 H 0.237 0.763 35 H 0.294 0.706 36 H 0.158 0.842 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.252 -23.189 -0.367 28.319 hybrid contribution 0.315 0.328 0.341 0.569 sum 16.567 -22.861 -0.025 28.232 Atomic orbital electron populations 1.70184 1.08041 1.28829 1.48640 1.26599 0.96843 1.02782 0.95782 0.84525 0.78282 0.74832 0.78559 1.17415 1.19282 1.19434 1.21877 0.92572 0.81339 1.53144 0.87927 1.83947 1.36093 1.12691 1.80784 1.20008 0.91653 0.87966 0.93138 1.20461 1.00102 0.90508 1.11547 1.20913 0.93190 0.96962 0.94975 1.19563 0.93508 0.94341 1.11512 1.20025 0.99004 0.91104 0.82150 1.44980 1.53216 1.22176 1.10735 1.17794 0.89364 0.87885 0.83766 1.68057 1.19455 1.13262 1.27661 1.22656 0.93123 0.90020 0.97967 1.22957 1.09263 1.04714 0.82582 1.43668 1.33618 1.17550 1.08884 1.27287 1.04548 1.03860 0.77788 1.74358 1.11794 1.02248 1.26284 1.74738 1.21253 1.22259 0.96253 1.22858 1.04203 0.92476 0.96843 1.20970 0.99850 0.90840 0.94584 1.21252 0.93023 1.00149 1.12076 0.91772 0.86742 0.83400 0.89555 0.89801 0.74585 0.76598 0.76294 0.70574 0.84230 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.26 13.67 21.62 0.30 -55.97 16 2 C -0.02 -1.26 5.49 84.84 0.47 -0.80 16 3 Si 1.02 42.71 29.55 68.60 2.03 44.74 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.41 -23.87 9.49 67.92 0.64 -23.23 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -13.65 9.76 -22.72 -0.22 -13.87 16 10 C 0.12 6.00 6.65 22.58 0.15 6.15 16 11 C -0.21 -8.50 9.99 22.39 0.22 -8.28 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.19 -5.38 5.25 -19.84 -0.10 -5.48 16 14 C 0.20 4.38 5.83 85.63 0.50 4.88 16 15 N -0.68 -15.81 5.69 -347.37 -1.97 -17.79 16 16 C 0.47 10.79 7.55 134.03 1.01 11.81 16 17 N -0.56 -10.57 9.67 -193.22 -1.87 -12.44 16 18 C 0.10 1.12 11.06 83.60 0.92 2.04 16 19 C -0.07 -0.64 11.06 83.09 0.92 0.28 16 20 N -0.36 -6.02 2.95 -356.36 -1.05 -7.07 16 21 C 0.15 2.32 12.97 180.18 2.34 4.66 16 22 N -0.31 -7.89 12.21 -60.13 -0.73 -8.62 16 23 N -0.29 -8.69 12.30 -54.99 -0.68 -9.37 16 24 C 0.09 2.30 7.82 134.37 1.05 3.35 16 25 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 26 C -0.25 -10.35 9.17 22.39 0.21 -10.14 16 27 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 29 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 31 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.42 10.54 8.48 -92.71 -0.79 9.76 16 33 H 0.22 0.53 8.06 -2.91 -0.02 0.50 16 34 H 0.22 -0.26 8.06 -2.91 -0.02 -0.28 16 35 H 0.28 0.85 8.06 -2.91 -0.02 0.82 16 36 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 Total: -1.00 -80.33 330.99 4.91 -75.42 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.35 Total: 22.04 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 8.76 Total: -17.07 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -6.01 Total: -111.25 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.22 Total: -13.87 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -80.33 4.91 -75.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743461931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.592 kcal (2) G-P(sol) polarization free energy of solvation -80.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds