Wall clock time and date at job start Fri Apr 10 2020 22:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48493 * 109.47206 * 274.98250 * 3 2 1 5 5 H 1.48503 * 109.46692 * 34.98515 * 3 2 1 6 6 H 1.48503 * 109.47150 * 154.98013 * 3 2 1 7 7 C 1.38984 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00588 * 185.93059 * 7 2 1 9 9 N 1.37331 * 119.99842 * 5.94034 * 7 2 1 10 10 C 1.36491 * 126.06785 * 174.13534 * 9 7 2 11 11 C 1.35682 * 107.50518 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07936 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99589 * 179.97438 * 12 11 10 14 14 O 1.21300 * 120.00282 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99771 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47190 * 180.02562 * 15 13 12 17 17 C 1.36034 * 126.34610 * 264.68764 * 16 15 13 18 18 N 1.30110 * 110.10060 * 179.87371 * 17 16 15 19 19 C 1.35786 * 109.64406 * 0.39557 * 18 17 16 20 20 C 1.39737 * 133.60734 * 179.76511 * 19 18 17 21 21 C 1.36601 * 119.89098 * 179.97438 * 20 19 18 22 22 C 1.38780 * 120.66667 * 359.97221 * 21 20 19 23 23 C 1.37850 * 120.44953 * 0.04868 * 22 21 20 24 24 C 1.38049 * 126.35192 * 84.99692 * 16 15 13 25 25 C 1.40652 * 107.83567 * 0.02562 * 11 10 9 26 26 N 1.30903 * 108.38859 * 359.97438 * 25 11 10 27 27 H 0.96996 * 119.99972 * 359.97438 * 1 2 3 28 28 H 1.08001 * 126.24537 * 359.75068 * 10 9 7 29 29 H 0.96998 * 120.00077 * 0.02562 * 12 11 10 30 30 H 1.09006 * 109.46950 * 300.00138 * 15 13 12 31 31 H 1.08997 * 109.47118 * 60.00317 * 15 13 12 32 32 H 1.07999 * 124.95083 * 0.02562 * 17 16 15 33 33 H 1.08008 * 120.05172 * 359.96557 * 20 19 18 34 34 H 1.07999 * 119.66696 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.77133 * 180.02562 * 22 21 20 36 36 H 1.08003 * 120.15525 * 180.02562 * 23 22 21 37 37 H 1.07998 * 125.80448 * 179.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1072 -1.3947 5 1 1.5009 2.6199 0.8028 6 1 3.5932 1.4121 0.5921 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2062 0.0961 9 7 1.3268 -2.3897 -0.1242 10 6 1.8863 -3.6281 -0.2521 11 6 0.8734 -4.5258 -0.3467 12 7 1.0112 -5.9174 -0.4916 13 6 -0.0844 -6.6981 -0.5735 14 8 -1.1893 -6.2001 -0.5227 15 6 0.0633 -8.1899 -0.7283 16 7 -1.2634 -8.8078 -0.7941 17 6 -1.9519 -9.3519 0.2453 18 7 -3.0981 -9.8085 -0.1677 19 6 -3.2196 -9.5961 -1.5033 20 6 -4.2182 -9.8826 -2.4379 21 6 -4.0451 -9.5346 -3.7474 22 6 -2.8847 -8.8967 -4.1629 23 6 -1.8861 -8.6045 -3.2587 24 6 -2.0441 -8.9511 -1.9236 25 6 -0.3391 -3.8164 -0.2752 26 7 -0.0653 -2.5432 -0.1423 27 1 -0.4850 0.8400 0.0004 28 1 2.9426 -3.8520 -0.2781 29 1 1.8947 -6.3157 -0.5318 30 1 0.6111 -8.4076 -1.6452 31 1 0.6095 -8.5914 0.1253 32 1 -1.5995 -9.3960 1.2653 33 1 -5.1253 -10.3785 -2.1252 34 1 -4.8190 -9.7581 -4.4667 35 1 -2.7632 -8.6277 -5.2017 36 1 -0.9852 -8.1076 -3.5871 37 1 -1.3277 -4.2486 -0.3219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747430436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:13 Heat of formation + Delta-G solvation = 110.900963 kcal Electronic energy + Delta-G solvation = -24069.468053 eV Core-core repulsion = 20428.044203 eV Total energy + Delta-G solvation = -3641.423850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.11089 -41.70334 -40.22050 -38.17228 -35.99930 -35.17102 -34.96451 -32.30217 -31.58494 -30.24935 -30.05989 -28.40578 -26.63365 -24.18589 -23.29442 -22.94554 -22.52294 -21.33489 -21.18310 -19.42697 -18.43810 -18.17815 -17.96156 -17.42450 -16.76127 -16.68795 -16.36352 -16.12095 -15.67849 -15.24974 -15.06230 -14.83941 -14.78386 -14.67227 -14.48340 -13.51218 -13.40133 -13.32993 -12.97297 -12.83380 -12.82024 -12.69013 -12.40553 -12.07830 -11.88078 -11.66335 -11.04900 -10.94731 -10.85104 -10.71879 -10.12720 -9.29345 -9.06868 -8.55788 -8.48934 -6.26466 0.03402 0.57162 1.18016 1.38666 1.46724 1.47903 1.57565 1.83909 1.87473 2.08201 2.34973 2.47928 2.88573 2.95424 3.07043 3.37218 3.64540 3.80357 3.81266 4.10138 4.16523 4.21360 4.42433 4.51837 4.52181 4.59150 4.65121 4.84327 4.99102 5.04515 5.21563 5.28000 5.42197 5.47466 5.58721 5.59367 5.94590 5.97858 6.15662 6.29693 6.70206 6.72208 6.89339 7.34353 7.45853 7.66520 8.50615 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.002724 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.653652 B =10276.382389 C =10630.396741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.240 1.240 7 C -0.354 4.354 8 H 0.143 0.857 9 N -0.169 5.169 10 C -0.076 4.076 11 C -0.043 4.043 12 N -0.606 5.606 13 C 0.475 3.525 14 O -0.573 6.573 15 C 0.107 3.893 16 N -0.478 5.478 17 C 0.271 3.729 18 N -0.537 5.537 19 C 0.010 3.990 20 C -0.087 4.087 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.121 4.121 24 C 0.038 3.962 25 C -0.061 4.061 26 N -0.314 5.314 27 H 0.276 0.724 28 H 0.193 0.807 29 H 0.426 0.574 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.250 0.750 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.130 0.870 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -18.441 -4.999 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.163 1.163 7 C -0.485 4.485 8 H 0.161 0.839 9 N 0.062 4.938 10 C -0.226 4.226 11 C -0.149 4.149 12 N -0.253 5.253 13 C 0.262 3.738 14 O -0.451 6.451 15 C -0.018 4.018 16 N -0.167 5.167 17 C -0.014 4.014 18 N -0.256 5.256 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.147 4.147 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.070 4.070 25 C -0.236 4.236 26 N -0.146 5.146 27 H 0.085 0.915 28 H 0.210 0.790 29 H 0.264 0.736 30 H 0.168 0.832 31 H 0.194 0.806 32 H 0.265 0.735 33 H 0.152 0.848 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.148 0.852 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.409 -17.150 -4.337 18.015 hybrid contribution 1.076 0.440 -0.278 1.195 sum 4.485 -16.710 -4.614 17.906 Atomic orbital electron populations 1.70407 1.08535 1.29066 1.37404 1.26895 0.96410 1.04445 0.94130 0.84583 0.78602 0.74169 0.78891 1.19230 1.20351 1.16321 1.20635 0.93444 0.80990 1.53408 0.83948 1.44864 1.03492 1.05398 1.40057 1.22064 0.98946 0.84431 1.17173 1.17268 0.92391 0.84345 1.20942 1.42303 1.09852 1.02789 1.70330 1.21623 0.84037 0.90626 0.77538 1.90698 1.27724 1.75755 1.50937 1.21867 0.82432 0.86944 1.10548 1.45005 1.16832 1.47889 1.07005 1.26077 0.87319 0.92535 0.95490 1.70386 1.18634 1.26501 1.10114 1.19500 0.95908 1.03811 0.91479 1.20299 0.97524 1.00701 0.92165 1.20996 0.98810 0.99590 0.95255 1.21287 0.92856 0.98137 1.00317 1.20276 1.01739 1.02865 0.89313 1.19135 0.93790 1.03804 0.90284 1.24071 0.98920 0.91272 1.09341 1.78165 0.92429 1.16695 1.27361 0.91481 0.79042 0.73597 0.83159 0.80586 0.73468 0.84818 0.82501 0.82643 0.85166 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.79 11.84 21.66 0.26 -47.54 16 2 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 3 Si 1.02 38.11 29.56 68.60 2.03 40.14 16 4 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.24 -7.99 7.11 99.48 0.71 -7.29 16 7 C -0.35 -18.34 10.24 84.01 0.86 -17.48 16 8 H 0.14 6.32 7.84 -2.91 -0.02 6.30 16 9 N -0.17 -9.18 3.74 -190.01 -0.71 -9.89 16 10 C -0.08 -3.29 11.49 83.38 0.96 -2.34 16 11 C -0.04 -1.85 6.90 37.73 0.26 -1.59 16 12 N -0.61 -17.24 5.47 -303.92 -1.66 -18.90 16 13 C 0.48 13.70 7.87 87.66 0.69 14.39 16 14 O -0.57 -24.04 13.58 -3.09 -0.04 -24.08 16 15 C 0.11 1.67 6.64 85.64 0.57 2.24 16 16 N -0.48 -11.28 2.29 -524.32 -1.20 -12.48 16 17 C 0.27 6.47 12.49 180.06 2.25 8.72 16 18 N -0.54 -16.52 11.27 -192.03 -2.16 -18.69 16 19 C 0.01 0.31 7.23 39.45 0.29 0.60 16 20 C -0.09 -2.27 10.05 22.25 0.22 -2.04 16 21 C -0.13 -2.64 9.96 22.02 0.22 -2.42 16 22 C -0.11 -2.24 10.03 22.31 0.22 -2.02 16 23 C -0.12 -3.00 10.05 22.32 0.22 -2.78 16 24 C 0.04 1.09 6.87 38.86 0.27 1.36 16 25 C -0.06 -3.27 10.85 85.42 0.93 -2.34 16 26 N -0.31 -18.90 10.42 -56.47 -0.59 -19.49 16 27 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.19 6.28 8.06 -2.91 -0.02 6.25 16 29 H 0.43 7.29 8.83 -92.71 -0.82 6.47 16 30 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.18 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.25 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.16 8.85 5.92 -2.91 -0.02 8.83 16 Total: -1.00 -89.52 331.17 4.65 -84.87 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.31 Total: 31.67 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 8.42 Total: -5.62 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -6.07 Total: -126.98 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.04 Total: -24.08 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -89.52 4.65 -84.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747430436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.773 kcal (2) G-P(sol) polarization free energy of solvation -89.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds