Wall clock time and date at job start Fri Apr 10 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47255 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00021 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99661 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47280 * 179.97438 * 15 13 12 17 17 C 1.33990 * 125.02293 * 124.99730 * 16 15 13 18 18 C 1.38243 * 107.90614 * 179.97438 * 17 16 15 19 19 C 1.41128 * 134.81668 * 180.02562 * 18 17 16 20 20 C 1.35655 * 119.53547 * 179.97438 * 19 18 17 21 21 C 1.39684 * 121.72818 * 359.97438 * 20 19 18 22 22 C 1.35638 * 121.81310 * 0.02562 * 21 20 19 23 23 C 1.41151 * 119.59841 * 359.97438 * 22 21 20 24 24 N 1.32058 * 134.68120 * 180.32353 * 23 22 21 25 25 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 26 26 N 1.30910 * 108.38789 * 0.02562 * 25 11 10 27 27 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 28 28 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 29 29 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 30 30 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 31 31 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 32 32 H 1.07996 * 126.04399 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.23104 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.13747 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.09260 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.19714 * 180.02562 * 22 21 20 37 37 H 1.07996 * 125.80538 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 7 -1.2988 -8.8338 -0.0026 17 6 -1.7321 -9.7277 -0.9017 18 6 -3.0291 -10.0712 -0.5686 19 6 -3.9989 -10.9403 -1.1126 20 6 -5.2133 -11.0438 -0.5171 21 6 -5.5351 -10.3107 0.6275 22 6 -4.6509 -9.4576 1.2023 23 6 -3.3672 -9.2988 0.6371 24 7 -2.3021 -8.5791 0.9394 25 6 -0.3512 -3.8199 0.0002 26 7 -0.0715 -2.5410 0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 2.9301 -3.8707 -0.0031 29 1 1.8708 -6.3426 -0.0012 30 1 0.5769 -8.5321 -0.8916 31 1 0.5756 -8.5325 0.8884 32 1 -1.1679 -10.1119 -1.7386 33 1 -3.7754 -11.5195 -1.9964 34 1 -5.9508 -11.7104 -0.9391 35 1 -6.5151 -10.4256 1.0665 36 1 -4.9271 -8.9040 2.0875 37 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748529977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:17 Heat of formation + Delta-G solvation = 132.315953 kcal Electronic energy + Delta-G solvation = -23683.450519 eV Core-core repulsion = 20042.955292 eV Total energy + Delta-G solvation = -3640.495227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.27688 -41.66954 -40.20258 -38.06729 -35.96819 -35.02877 -33.81133 -32.67605 -32.23876 -30.10908 -29.64007 -28.51727 -26.72292 -24.33710 -22.91969 -22.85506 -21.99094 -21.39754 -21.23827 -19.41598 -18.46376 -17.86085 -17.83546 -17.42801 -16.91474 -16.56731 -16.41795 -15.90726 -15.64138 -15.19107 -15.00487 -14.84696 -14.77429 -14.56569 -13.92286 -13.63697 -13.50456 -13.33533 -12.92954 -12.87734 -12.71922 -12.45638 -12.33327 -12.10352 -11.87307 -11.24862 -11.11349 -11.04257 -10.86826 -10.75418 -10.13525 -9.53900 -8.56151 -8.51356 -8.48894 -6.27010 -0.23611 0.97264 1.18430 1.27245 1.38785 1.47556 1.56742 1.57143 1.83289 2.04622 2.26052 2.47377 2.86176 3.00229 3.07458 3.30322 3.69601 3.83840 4.02363 4.13081 4.23033 4.29321 4.41605 4.47055 4.57900 4.59752 4.70782 4.91561 4.97670 5.03555 5.25915 5.27418 5.41889 5.60784 5.64468 5.74480 5.89512 5.94182 6.13752 6.28424 6.69890 6.71425 6.73832 7.35606 7.45487 7.65644 8.50556 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.032965 B = 0.002454 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.182029 B =11408.490318 C =11987.025905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C -0.010 4.010 3 Si 1.021 2.979 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.353 4.353 8 H 0.144 0.856 9 N -0.168 5.168 10 C -0.077 4.077 11 C -0.042 4.042 12 N -0.608 5.608 13 C 0.479 3.521 14 O -0.563 6.563 15 C 0.116 3.884 16 N -0.316 5.316 17 C 0.096 3.904 18 C -0.237 4.237 19 C -0.037 4.037 20 C -0.174 4.174 21 C -0.069 4.069 22 C -0.144 4.144 23 C 0.065 3.935 24 N -0.341 5.341 25 C -0.064 4.064 26 N -0.314 5.314 27 H 0.276 0.724 28 H 0.194 0.806 29 H 0.426 0.574 30 H 0.191 0.809 31 H 0.151 0.849 32 H 0.241 0.759 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -23.132 -3.903 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.165 1.165 7 C -0.484 4.484 8 H 0.162 0.838 9 N 0.062 4.938 10 C -0.227 4.227 11 C -0.148 4.148 12 N -0.255 5.255 13 C 0.265 3.735 14 O -0.440 6.440 15 C -0.008 4.008 16 N -0.090 5.090 17 C -0.059 4.059 18 C -0.247 4.247 19 C -0.057 4.057 20 C -0.194 4.194 21 C -0.091 4.091 22 C -0.166 4.166 23 C -0.089 4.089 24 N -0.167 5.167 25 C -0.239 4.239 26 N -0.146 5.146 27 H 0.085 0.915 28 H 0.211 0.789 29 H 0.265 0.735 30 H 0.208 0.792 31 H 0.169 0.831 32 H 0.257 0.743 33 H 0.175 0.825 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.819 -20.511 -3.033 20.814 hybrid contribution 0.175 -0.272 -0.145 0.355 sum 1.994 -20.783 -3.178 21.119 Atomic orbital electron populations 1.70417 1.08577 1.29079 1.37491 1.26938 0.96451 1.04556 0.94138 0.84575 0.78311 0.73917 0.79281 1.18783 1.20450 1.16463 1.20656 0.93027 0.80807 1.53899 0.83824 1.44872 1.03509 1.05018 1.40353 1.22054 0.98936 0.83965 1.17748 1.17264 0.92427 0.83895 1.21221 1.42247 1.09688 1.02095 1.71501 1.21249 0.84134 0.90433 0.77713 1.90723 1.27919 1.75530 1.49819 1.22022 0.80146 0.87566 1.11021 1.48258 1.12073 1.29383 1.19287 1.23514 0.94901 0.92009 0.95492 1.20076 0.96452 1.07356 1.00811 1.20649 0.91549 0.94663 0.98798 1.20891 0.98035 1.02949 0.97497 1.20993 0.99109 0.93705 0.95330 1.20084 0.90842 1.03363 1.02283 1.21483 0.94918 0.95616 0.96861 1.77815 0.98420 1.25375 1.15130 1.24059 0.98948 0.91175 1.09688 1.78167 0.92286 1.16558 1.27571 0.91480 0.78888 0.73541 0.79197 0.83137 0.74255 0.82543 0.83130 0.83403 0.86653 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.86 11.81 21.66 0.26 -48.61 16 2 C -0.01 -0.50 5.50 84.95 0.47 -0.04 16 3 Si 1.02 38.83 29.55 68.60 2.03 40.86 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 7 C -0.35 -18.68 10.25 84.01 0.86 -17.82 16 8 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 9 N -0.17 -9.39 3.74 -190.01 -0.71 -10.10 16 10 C -0.08 -3.46 11.49 83.37 0.96 -2.50 16 11 C -0.04 -1.88 6.90 37.73 0.26 -1.62 16 12 N -0.61 -18.73 5.47 -303.93 -1.66 -20.40 16 13 C 0.48 15.33 7.82 87.66 0.69 16.02 16 14 O -0.56 -25.85 12.83 -3.11 -0.04 -25.89 16 15 C 0.12 2.02 6.93 85.63 0.59 2.62 16 16 N -0.32 -8.08 3.35 -350.07 -1.17 -9.26 16 17 C 0.10 1.83 11.45 84.36 0.97 2.79 16 18 C -0.24 -5.83 6.33 -20.23 -0.13 -5.96 16 19 C -0.04 -0.67 10.09 22.38 0.23 -0.44 16 20 C -0.17 -3.10 9.90 22.02 0.22 -2.88 16 21 C -0.07 -1.47 9.89 22.02 0.22 -1.25 16 22 C -0.14 -4.17 10.08 22.38 0.23 -3.94 16 23 C 0.06 2.13 7.49 42.16 0.32 2.45 16 24 N -0.34 -12.38 11.56 -48.70 -0.56 -12.94 16 25 C -0.06 -3.58 10.85 85.42 0.93 -2.65 16 26 N -0.31 -19.43 10.40 -56.46 -0.59 -20.02 16 27 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.19 6.57 8.06 -2.91 -0.02 6.54 16 29 H 0.43 8.00 8.83 -92.71 -0.82 7.18 16 30 H 0.19 0.89 8.04 -2.39 -0.02 0.87 16 31 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.24 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.16 9.19 5.92 -2.91 -0.02 9.18 16 Total: -1.00 -96.32 330.41 4.66 -91.66 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.31 Total: 29.92 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 6.79 Total: -15.24 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -4.44 Total: -121.32 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.04 Total: -25.89 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -96.32 4.66 -91.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748529977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.977 kcal (2) G-P(sol) polarization free energy of solvation -96.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds