Wall clock time and date at job start Fri Apr 10 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00363 * 2 1 4 4 H 1.48496 * 109.47166 * 240.00068 * 3 2 1 5 5 H 1.48501 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47169 * 119.99535 * 3 2 1 7 7 C 1.39951 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99787 * 195.14872 * 7 2 1 9 9 C 1.41392 * 119.99944 * 15.14535 * 7 2 1 10 10 C 1.40726 * 120.24724 * 25.56406 * 9 7 2 11 11 C 1.37596 * 119.75006 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24268 * 359.97438 * 11 10 9 13 13 C 1.38607 * 120.50590 * 359.72527 * 12 11 10 14 14 C 1.37645 * 120.24496 * 0.55336 * 13 12 11 15 15 C 1.50703 * 120.12819 * 179.72123 * 14 13 12 16 16 C 1.50699 * 109.47010 * 264.72948 * 15 14 13 17 17 N 1.31132 * 126.55345 * 90.00003 * 16 15 14 18 18 C 1.34496 * 105.61283 * 180.02562 * 17 16 15 19 19 C 1.50701 * 126.28365 * 180.02562 * 18 17 16 20 20 N 1.46501 * 109.47356 * 89.99509 * 19 18 17 21 21 C 1.34428 * 126.82507 * 124.99356 * 20 19 18 22 22 N 1.30823 * 108.08177 * 179.97438 * 21 20 19 23 23 C 1.33236 * 109.82896 * 0.02562 * 22 21 20 24 24 N 1.30715 * 108.94884 * 359.75248 * 23 22 21 25 25 N 1.29937 * 107.42721 * 359.97438 * 18 17 16 26 26 O 1.21301 * 110.25581 * 359.97438 * 25 18 17 27 27 H 0.97005 * 119.99930 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.12772 * 0.04145 * 10 9 7 29 29 H 1.07999 * 119.88129 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.74287 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.88160 * 180.29927 * 13 12 11 32 32 H 1.08993 * 109.46856 * 144.72705 * 15 14 13 33 33 H 1.08994 * 109.46613 * 24.72895 * 15 14 13 34 34 H 1.08999 * 109.47212 * 209.99545 * 19 18 17 35 35 H 1.08999 * 109.47263 * 329.99592 * 19 18 17 36 36 H 1.08005 * 125.96010 * 0.02562 * 21 20 19 37 37 H 1.08004 * 125.53291 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0079 -1.2121 0.0005 8 1 3.0597 -1.2282 0.2450 9 6 1.3377 -2.4154 -0.3188 10 6 0.1871 -2.3925 -1.1289 11 6 -0.4574 -3.5696 -1.4329 12 6 0.0232 -4.7752 -0.9446 13 6 1.1590 -4.8103 -0.1510 14 6 1.8165 -3.6446 0.1705 15 6 3.0476 -3.6853 1.0387 16 6 2.6597 -3.4310 2.4725 17 7 2.3214 -4.3333 3.3619 18 6 2.0602 -3.6494 4.4901 19 6 1.6280 -4.2365 5.8091 20 7 2.8104 -4.5479 6.6160 21 6 3.0702 -4.1196 7.8634 22 7 4.2224 -4.6175 8.2320 23 6 4.7264 -5.3650 7.2509 24 7 3.8956 -5.3572 6.2418 25 7 2.2499 -2.3897 4.2344 26 8 2.5956 -2.2428 3.0810 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1884 -1.4546 -1.5108 29 1 -1.3407 -3.5544 -2.0540 30 1 -0.4893 -5.6942 -1.1879 31 1 1.5272 -5.7554 0.2198 32 1 3.7491 -2.9183 0.7105 33 1 3.5170 -4.6656 0.9577 34 1 1.0048 -3.5171 6.3402 35 1 1.0588 -5.1490 5.6315 36 1 2.4375 -3.4771 8.4580 37 1 5.6670 -5.8946 7.2852 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763351776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:25 Heat of formation + Delta-G solvation = 180.929869 kcal Electronic energy + Delta-G solvation = -24577.567350 eV Core-core repulsion = 20939.180181 eV Total energy + Delta-G solvation = -3638.387169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.10666 -42.15179 -37.91757 -36.03629 -34.35972 -33.76284 -32.98133 -31.33836 -30.70053 -29.59574 -28.01384 -26.85567 -25.16019 -23.42509 -22.51098 -22.10193 -21.23465 -20.91845 -19.72798 -17.94277 -17.46601 -17.18762 -16.88300 -15.83540 -15.54133 -15.22770 -14.73910 -14.55751 -14.22642 -14.04507 -13.80757 -13.67702 -13.18000 -12.70113 -12.37762 -12.09187 -11.97959 -11.64835 -11.34577 -11.29378 -11.20273 -11.05982 -10.84550 -10.61688 -10.52007 -10.18405 -10.00701 -9.89759 -9.84371 -9.62433 -9.29860 -9.22615 -7.56149 -7.48998 -6.86398 -4.51152 1.40224 1.55285 2.04395 2.62240 2.78644 2.84533 2.89989 3.01898 3.04810 3.17471 3.44938 3.70644 3.85835 4.07559 4.16850 4.54349 4.65949 4.72611 4.95311 5.14005 5.42866 5.60730 5.81561 5.91234 6.04801 6.07817 6.18423 6.27228 6.29605 6.39304 6.40346 6.58406 6.62163 6.97224 7.13028 7.24535 7.46694 7.74897 7.87395 7.93040 7.97546 8.13864 8.48462 8.57773 8.73960 8.81717 10.06747 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.004089 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.790535 B = 6846.145871 C = 8024.745399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.125 3.875 10 C -0.161 4.161 11 C -0.100 4.100 12 C -0.244 4.244 13 C -0.067 4.067 14 C -0.221 4.221 15 C 0.037 3.963 16 C 0.230 3.770 17 N -0.480 5.480 18 C 0.133 3.867 19 C 0.233 3.767 20 N -0.376 5.376 21 C 0.258 3.742 22 N -0.548 5.548 23 C 0.192 3.808 24 N -0.299 5.299 25 N -0.382 5.382 26 O 0.100 5.900 27 H 0.282 0.718 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.220 0.780 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -4.243 8.829 10.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.122 3.878 10 C -0.180 4.180 11 C -0.119 4.119 12 C -0.263 4.263 13 C -0.086 4.086 14 C -0.223 4.223 15 C -0.002 4.002 16 C 0.011 3.989 17 N -0.213 5.213 18 C -0.140 4.140 19 C 0.109 3.891 20 N -0.169 5.169 21 C -0.039 4.039 22 N -0.275 5.275 23 C -0.111 4.111 24 N -0.126 5.126 25 N -0.089 5.089 26 O 0.038 5.962 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.237 0.763 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.856 -4.184 9.219 10.519 hybrid contribution -0.076 0.998 -0.088 1.005 sum 2.780 -3.187 9.131 10.063 Atomic orbital electron populations 1.69794 1.07630 1.29505 1.34485 1.25880 0.94703 1.01359 0.91918 0.86401 0.80301 0.80221 0.80211 1.18643 1.20294 1.18664 1.19573 0.97156 0.90770 1.41085 0.90048 1.17420 0.91071 0.91209 0.88057 1.21378 0.98800 0.96852 1.00999 1.20759 0.98354 0.93435 0.99359 1.20362 1.00823 0.96390 1.08720 1.20396 0.95079 0.95888 0.97191 1.19088 1.01294 0.94465 1.07476 1.18910 0.97963 1.03131 0.80197 1.29253 0.92670 0.78515 0.98475 1.71861 1.19289 1.31105 0.99054 1.25232 1.04548 0.87087 0.97172 1.19709 0.83020 1.02164 0.84164 1.50493 1.17327 1.36395 1.12669 1.26132 0.94716 0.97689 0.85354 1.70535 1.09240 1.16402 1.31313 1.26072 1.00296 0.97871 0.86865 1.78268 0.96932 1.14036 1.23340 1.74554 1.17458 1.19626 0.97224 1.85372 1.60573 1.34266 1.15975 0.90673 0.86088 0.89378 0.89392 0.88998 0.88119 0.88575 0.85520 0.86199 0.76343 0.76697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.41 10.87 55.55 0.60 -18.80 16 2 C 0.08 1.89 5.19 -17.34 -0.09 1.80 16 3 Si 0.90 17.90 29.59 -169.99 -5.03 12.88 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -10.95 8.47 -37.74 -0.32 -11.27 16 8 H 0.08 1.83 6.35 -52.49 -0.33 1.50 16 9 C 0.13 3.04 5.57 -106.83 -0.60 2.44 16 10 C -0.16 -3.95 8.68 -38.88 -0.34 -4.28 16 11 C -0.10 -2.26 10.02 -39.66 -0.40 -2.65 16 12 C -0.24 -5.22 10.05 -39.29 -0.39 -5.61 16 13 C -0.07 -1.42 9.66 -39.66 -0.38 -1.80 16 14 C -0.22 -4.82 5.17 -103.91 -0.54 -5.35 16 15 C 0.04 0.68 5.49 -29.03 -0.16 0.52 16 16 C 0.23 4.56 7.75 -13.06 -0.10 4.46 16 17 N -0.48 -9.24 11.55 -9.87 -0.11 -9.36 16 18 C 0.13 2.32 7.68 -156.38 -1.20 1.12 16 19 C 0.23 2.83 7.17 -5.19 -0.04 2.79 16 20 N -0.38 -4.85 3.68 -63.81 -0.23 -5.09 16 21 C 0.26 2.77 12.63 -90.66 -1.14 1.63 16 22 N -0.55 -6.96 11.19 -15.83 -0.18 -7.14 16 23 C 0.19 2.43 13.03 -91.82 -1.20 1.23 16 24 N -0.30 -4.47 12.56 29.29 0.37 -4.10 16 25 N -0.38 -7.41 12.16 30.90 0.38 -7.04 16 26 O 0.10 2.09 11.31 18.09 0.20 2.29 16 27 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 28 H 0.12 3.07 6.14 -52.48 -0.32 2.74 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.10 1.76 6.48 -51.93 -0.34 1.42 16 33 H 0.10 1.56 8.05 -51.93 -0.42 1.14 16 34 H 0.13 1.06 8.09 -51.93 -0.42 0.64 16 35 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.22 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.22 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -30.82 332.64 -9.39 -40.21 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.50 Total: 6.12 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -6.90 Total: -14.99 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.82 Total: -51.53 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.20 Total: 2.29 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.82 -9.39 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763351776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.139 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds