Wall clock time and date at job start Fri Apr 10 2020 22:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00363 * 2 1 4 4 H 1.48496 * 109.47166 * 240.00068 * 3 2 1 5 5 H 1.48501 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47169 * 119.99535 * 3 2 1 7 7 C 1.39951 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99787 * 195.14872 * 7 2 1 9 9 C 1.41392 * 119.99944 * 15.14535 * 7 2 1 10 10 C 1.40726 * 120.24724 * 25.56406 * 9 7 2 11 11 C 1.37596 * 119.75006 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24268 * 359.97438 * 11 10 9 13 13 C 1.38607 * 120.50590 * 359.72527 * 12 11 10 14 14 C 1.37645 * 120.24496 * 0.55336 * 13 12 11 15 15 C 1.50703 * 120.12819 * 179.72123 * 14 13 12 16 16 C 1.50699 * 109.47010 * 264.72948 * 15 14 13 17 17 N 1.31132 * 126.55345 * 90.00003 * 16 15 14 18 18 C 1.34496 * 105.61283 * 180.02562 * 17 16 15 19 19 C 1.50701 * 126.28365 * 180.02562 * 18 17 16 20 20 N 1.46501 * 109.47356 * 89.99509 * 19 18 17 21 21 C 1.34428 * 126.82507 * 124.99356 * 20 19 18 22 22 N 1.30823 * 108.08177 * 179.97438 * 21 20 19 23 23 C 1.33236 * 109.82896 * 0.02562 * 22 21 20 24 24 N 1.30715 * 108.94884 * 359.75248 * 23 22 21 25 25 N 1.29937 * 107.42721 * 359.97438 * 18 17 16 26 26 O 1.21301 * 110.25581 * 359.97438 * 25 18 17 27 27 H 0.97005 * 119.99930 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.12772 * 0.04145 * 10 9 7 29 29 H 1.07999 * 119.88129 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.74287 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.88160 * 180.29927 * 13 12 11 32 32 H 1.08993 * 109.46856 * 144.72705 * 15 14 13 33 33 H 1.08994 * 109.46613 * 24.72895 * 15 14 13 34 34 H 1.08999 * 109.47212 * 209.99545 * 19 18 17 35 35 H 1.08999 * 109.47263 * 329.99592 * 19 18 17 36 36 H 1.08005 * 125.96010 * 0.02562 * 21 20 19 37 37 H 1.08004 * 125.53291 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0079 -1.2121 0.0005 8 1 3.0597 -1.2282 0.2450 9 6 1.3377 -2.4154 -0.3188 10 6 0.1871 -2.3925 -1.1289 11 6 -0.4574 -3.5696 -1.4329 12 6 0.0232 -4.7752 -0.9446 13 6 1.1590 -4.8103 -0.1510 14 6 1.8165 -3.6446 0.1705 15 6 3.0476 -3.6853 1.0387 16 6 2.6597 -3.4310 2.4725 17 7 2.3214 -4.3333 3.3619 18 6 2.0602 -3.6494 4.4901 19 6 1.6280 -4.2365 5.8091 20 7 2.8104 -4.5479 6.6160 21 6 3.0702 -4.1196 7.8634 22 7 4.2224 -4.6175 8.2320 23 6 4.7264 -5.3650 7.2509 24 7 3.8956 -5.3572 6.2418 25 7 2.2499 -2.3897 4.2344 26 8 2.5956 -2.2428 3.0810 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1884 -1.4546 -1.5108 29 1 -1.3407 -3.5544 -2.0540 30 1 -0.4893 -5.6942 -1.1879 31 1 1.5272 -5.7554 0.2198 32 1 3.7491 -2.9183 0.7105 33 1 3.5170 -4.6656 0.9577 34 1 1.0048 -3.5171 6.3402 35 1 1.0588 -5.1490 5.6315 36 1 2.4375 -3.4771 8.4580 37 1 5.6670 -5.8946 7.2852 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763351776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:24 Heat of formation + Delta-G solvation = 164.157087 kcal Electronic energy + Delta-G solvation = -24578.294672 eV Core-core repulsion = 20939.180181 eV Total energy + Delta-G solvation = -3639.114491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.54627 -43.05103 -39.62939 -37.32941 -35.68696 -35.49308 -34.30557 -32.32364 -32.18115 -31.34782 -29.06338 -28.47170 -26.90397 -24.76643 -23.72443 -22.97003 -22.86052 -22.32468 -21.32191 -19.22431 -19.11593 -18.60488 -18.02003 -17.28798 -16.87559 -16.40403 -16.16286 -15.84651 -15.58450 -15.48243 -15.10363 -14.91944 -14.38440 -14.18344 -13.89970 -13.67521 -13.34350 -12.96438 -12.94914 -12.82542 -12.72504 -12.62045 -12.50597 -12.15422 -12.06080 -11.54133 -11.32807 -11.09552 -11.03495 -10.94091 -10.84387 -10.78748 -9.30955 -9.26061 -8.61474 -6.32365 0.06807 0.59003 0.81475 0.99464 1.11934 1.40041 1.48529 1.55682 1.64828 1.95248 1.98310 2.21121 2.51417 2.78678 2.91107 3.46610 3.63941 3.70022 3.91589 3.98813 4.23777 4.28365 4.33711 4.40899 4.56132 4.63673 4.73327 4.81473 4.90285 4.98868 5.15870 5.23140 5.35892 5.40989 5.49652 5.73034 5.77503 6.00950 6.11035 6.20756 6.37751 6.71066 6.94757 7.03683 7.05060 7.10909 8.33799 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.004089 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.790535 B = 6846.145871 C = 8024.745399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.042 3.958 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.478 4.478 8 H 0.087 0.913 9 C 0.098 3.902 10 C -0.191 4.191 11 C -0.108 4.108 12 C -0.245 4.245 13 C -0.073 4.073 14 C -0.219 4.219 15 C 0.039 3.961 16 C 0.223 3.777 17 N -0.492 5.492 18 C 0.144 3.856 19 C 0.231 3.769 20 N -0.386 5.386 21 C 0.271 3.729 22 N -0.572 5.572 23 C 0.194 3.806 24 N -0.348 5.348 25 N -0.399 5.399 26 O 0.069 5.931 27 H 0.285 0.715 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.168 0.832 35 H 0.133 0.867 36 H 0.266 0.734 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 -4.996 10.247 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.507 4.507 8 H 0.105 0.895 9 C 0.096 3.904 10 C -0.211 4.211 11 C -0.126 4.126 12 C -0.264 4.264 13 C -0.091 4.091 14 C -0.222 4.222 15 C 0.001 3.999 16 C 0.004 3.996 17 N -0.226 5.226 18 C -0.131 4.131 19 C 0.108 3.892 20 N -0.178 5.178 21 C -0.025 4.025 22 N -0.300 5.300 23 C -0.109 4.109 24 N -0.175 5.175 25 N -0.111 5.111 26 O 0.013 5.987 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.186 0.814 35 H 0.151 0.849 36 H 0.282 0.718 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.138 -4.937 10.600 12.107 hybrid contribution -0.186 1.082 -0.457 1.189 sum 2.952 -3.855 10.143 11.245 Atomic orbital electron populations 1.69867 1.08923 1.30294 1.35928 1.26606 0.95278 1.04170 0.91296 0.85478 0.79052 0.76592 0.80140 1.17926 1.19822 1.18772 1.19790 0.97533 0.91386 1.41953 0.89511 1.17742 0.91522 0.92485 0.88659 1.21380 1.00105 0.96976 1.02609 1.21013 0.98820 0.93306 0.99481 1.20731 1.00852 0.96936 1.07876 1.20744 0.94874 0.96718 0.96775 1.19394 1.01912 0.93898 1.06957 1.18975 0.96857 1.04867 0.79250 1.29400 0.92713 0.78542 0.98926 1.71888 1.19594 1.31323 0.99749 1.26138 1.02121 0.86421 0.98389 1.20146 0.83157 1.03603 0.82307 1.50483 1.17246 1.36717 1.13389 1.27078 0.94294 0.96463 0.84676 1.70586 1.10333 1.17296 1.31739 1.26631 1.00735 0.97280 0.86265 1.78203 0.98324 1.15953 1.24980 1.74539 1.18905 1.20772 0.96834 1.85340 1.61602 1.34950 1.16816 0.90422 0.87974 0.87617 0.86714 0.86432 0.87504 0.85942 0.81449 0.84919 0.71843 0.74304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.79 10.87 21.83 0.24 -41.55 16 2 C 0.04 2.01 5.19 85.26 0.44 2.45 16 3 Si 0.97 37.20 29.59 68.60 2.03 39.23 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.48 -23.37 8.47 23.46 0.20 -23.17 16 8 H 0.09 3.99 6.35 -2.91 -0.02 3.97 16 9 C 0.10 4.85 5.57 -21.29 -0.12 4.74 16 10 C -0.19 -9.60 8.68 22.73 0.20 -9.41 16 11 C -0.11 -4.82 10.02 22.22 0.22 -4.59 16 12 C -0.24 -10.08 10.05 22.46 0.23 -9.85 16 13 C -0.07 -2.96 9.66 22.22 0.21 -2.75 16 14 C -0.22 -9.45 5.17 -19.40 -0.10 -9.55 16 15 C 0.04 1.42 5.49 29.10 0.16 1.58 16 16 C 0.22 8.75 7.75 88.38 0.68 9.44 16 17 N -0.49 -18.41 11.55 -303.20 -3.50 -21.91 16 18 C 0.14 4.80 7.68 138.47 1.06 5.86 16 19 C 0.23 5.01 7.17 85.63 0.61 5.63 16 20 N -0.39 -9.07 3.68 -355.80 -1.31 -10.38 16 21 C 0.27 5.02 12.63 180.36 2.28 7.29 16 22 N -0.57 -13.32 11.19 -204.00 -2.28 -15.60 16 23 C 0.19 4.60 13.03 180.77 2.36 6.96 16 24 N -0.35 -9.92 12.56 -61.24 -0.77 -10.69 16 25 N -0.40 -15.25 12.16 -60.33 -0.73 -15.98 16 26 O 0.07 2.88 11.31 74.79 0.85 3.73 16 27 H 0.29 13.33 8.30 -92.70 -0.77 12.56 16 28 H 0.10 5.42 6.14 -2.91 -0.02 5.41 16 29 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 31 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.11 3.71 6.48 -2.39 -0.02 3.70 16 33 H 0.12 3.74 8.05 -2.39 -0.02 3.72 16 34 H 0.17 2.17 8.09 -2.39 -0.02 2.15 16 35 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.27 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.24 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -68.14 332.64 4.08 -64.06 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 1.12 Total: 24.47 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 8.44 Total: -15.37 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -8.36 Total: -116.11 kcal Atomic # 8 Polarization: 2.88 SS G_CDS: 0.85 Total: 3.73 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -68.14 4.08 -64.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763351776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.215 kcal (2) G-P(sol) polarization free energy of solvation -68.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds