Wall clock time and date at job start Fri Apr 10 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99366 * 2 1 4 4 H 1.48501 * 109.47319 * 90.00248 * 3 2 1 5 5 H 1.48507 * 109.46671 * 209.99772 * 3 2 1 6 6 H 1.48494 * 109.47286 * 329.99862 * 3 2 1 7 7 C 1.37870 * 120.00187 * 180.27012 * 2 1 3 8 8 H 1.08004 * 119.99885 * 179.72142 * 7 2 1 9 9 C 1.50699 * 120.00423 * 359.72952 * 7 2 1 10 10 N 1.46494 * 109.47385 * 179.97438 * 9 7 2 11 11 C 1.34978 * 125.97272 * 124.71507 * 10 9 7 12 12 C 1.35232 * 107.86689 * 179.89748 * 11 10 9 13 13 C 1.40429 * 107.86770 * 0.36510 * 12 11 10 14 14 N 1.40042 * 125.97860 * 179.77264 * 13 12 11 15 15 C 1.34774 * 119.99881 * 359.97438 * 14 13 12 16 16 O 1.21672 * 120.00216 * 354.82905 * 15 14 13 17 17 C 1.47009 * 120.00232 * 174.82970 * 15 14 13 18 18 C 1.37630 * 119.93316 * 5.06770 * 17 15 14 19 19 C 1.39924 * 120.01536 * 179.73736 * 18 17 15 20 20 C 1.36221 * 119.91867 * 0.53670 * 19 18 17 21 21 C 1.40925 * 119.80423 * 359.73506 * 20 19 18 22 22 N 1.32574 * 132.19008 * 179.97438 * 21 20 19 23 23 C 1.33231 * 109.14093 * 180.02562 * 22 21 20 24 24 C 1.35445 * 108.58260 * 359.97438 * 23 22 21 25 25 N 1.36262 * 107.17535 * 359.97438 * 24 23 22 26 26 N 1.31241 * 108.04619 * 359.77567 * 13 12 11 27 27 H 0.97002 * 119.99358 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47113 * 300.00228 * 9 7 2 29 29 H 1.09006 * 109.46558 * 59.99380 * 9 7 2 30 30 H 1.07997 * 126.06457 * 0.02562 * 11 10 9 31 31 H 1.08001 * 126.06589 * 180.13990 * 12 11 10 32 32 H 0.97002 * 120.00470 * 179.97438 * 14 13 12 33 33 H 1.08000 * 119.98993 * 359.97438 * 18 17 15 34 34 H 1.07994 * 120.04323 * 180.27202 * 19 18 17 35 35 H 1.08000 * 120.10235 * 179.71332 * 20 19 18 36 36 H 1.08004 * 125.70962 * 180.02562 * 23 22 21 37 37 H 1.07999 * 126.41596 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0056 8 1 3.0846 -1.1939 -0.0102 9 6 1.2512 -2.4991 -0.0056 10 7 2.2032 -3.6125 -0.0128 11 6 2.2497 -4.6217 0.8824 12 6 3.2639 -5.4434 0.5289 13 6 3.8672 -4.9126 -0.6227 14 7 4.9595 -5.4608 -1.3064 15 6 5.5268 -6.6012 -0.8659 16 8 5.1520 -7.1039 0.1768 17 6 6.5984 -7.2379 -1.6453 18 6 7.0934 -6.6155 -2.7686 19 6 8.1171 -7.2174 -3.5086 20 6 8.6153 -8.4249 -3.1220 21 6 8.1004 -9.0600 -1.9742 22 7 8.3943 -10.2114 -1.3863 23 6 7.6171 -10.3659 -0.3152 24 6 6.8046 -9.2871 -0.2123 25 7 7.1021 -8.4585 -1.2523 26 7 3.2283 -3.8127 -0.9461 27 1 -0.4849 -0.8401 0.0004 28 1 0.6282 -2.5590 0.8867 29 1 0.6208 -2.5547 -0.8932 30 1 1.5921 -4.7512 1.7292 31 1 3.5599 -6.3457 1.0434 32 1 5.3079 -5.0197 -2.0970 33 1 6.6942 -5.6604 -3.0767 34 1 8.5089 -6.7273 -4.3875 35 1 9.4022 -8.8943 -3.6936 36 1 7.6330 -11.2097 0.3587 37 1 6.0601 -9.1158 0.5511 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776932041.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:31 Heat of formation + Delta-G solvation = 148.907630 kcal Electronic energy + Delta-G solvation = -23930.739709 eV Core-core repulsion = 20290.963951 eV Total energy + Delta-G solvation = -3639.775757 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.14213 -40.98186 -39.62407 -37.48946 -35.27273 -33.88473 -33.82471 -31.44957 -30.39547 -29.57611 -29.11597 -26.55628 -25.23284 -23.40650 -22.94387 -22.57446 -21.71137 -20.60688 -19.89542 -18.13255 -17.65794 -17.29720 -17.00432 -16.64726 -16.43088 -15.89740 -15.37075 -15.24688 -14.60398 -14.27961 -14.16186 -13.85559 -13.82865 -13.37471 -12.87881 -12.69374 -12.57886 -12.42387 -12.08334 -11.94463 -11.41148 -11.26309 -10.91518 -10.68726 -10.48010 -10.34608 -10.23260 -9.95935 -9.20400 -9.10872 -8.65330 -8.42061 -8.20664 -7.70454 -6.65770 -4.40502 -0.14681 0.92117 1.87813 2.03017 2.54539 2.59966 2.79201 3.15682 3.31927 3.35503 3.46502 3.49287 3.53470 3.89208 4.05137 4.16528 4.33684 4.34804 4.61863 5.00717 5.07905 5.12776 5.23813 5.27364 5.37491 5.51114 5.57158 5.65017 5.91370 6.01860 6.21288 6.28258 6.33911 6.45110 6.62903 6.65175 7.04277 7.22918 7.54432 7.56399 7.68517 7.77123 8.25037 8.35305 8.52692 9.27867 10.72038 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.026771 B = 0.002692 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.641196 B =10397.874507 C =11134.422045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.610 4.610 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.313 5.313 11 C 0.054 3.946 12 C -0.283 4.283 13 C 0.255 3.745 14 N -0.614 5.614 15 C 0.569 3.431 16 O -0.503 6.503 17 C 0.039 3.961 18 C -0.082 4.082 19 C -0.120 4.120 20 C -0.042 4.042 21 C 0.200 3.800 22 N -0.482 5.482 23 C 0.023 3.977 24 C -0.063 4.063 25 N -0.335 5.335 26 N -0.294 5.294 27 H 0.268 0.732 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.170 0.830 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.185 0.815 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.104 -15.782 -5.097 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.181 4.181 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.648 4.648 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.095 5.095 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.003 3.997 14 N -0.262 5.262 15 C 0.354 3.646 16 O -0.377 6.377 17 C -0.067 4.067 18 C -0.104 4.104 19 C -0.144 4.144 20 C -0.062 4.062 21 C -0.041 4.041 22 N -0.202 5.202 23 C -0.129 4.129 24 C -0.196 4.196 25 N -0.008 5.008 26 N -0.125 5.125 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.188 0.812 31 H 0.179 0.821 32 H 0.250 0.750 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.202 0.798 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 14.002 -13.994 -5.393 20.518 hybrid contribution -0.298 -1.511 0.548 1.634 sum 13.704 -15.505 -4.845 21.253 Atomic orbital electron populations 1.70830 1.06794 1.30487 1.45787 1.25933 0.96298 1.02842 0.93048 0.83384 0.74686 0.74300 0.77022 1.21166 1.21215 1.20653 1.22114 0.95403 0.90357 1.56935 0.91764 1.19819 0.86257 0.82757 0.98166 1.48849 1.23179 1.19497 1.17928 1.22588 1.00323 0.89980 0.96679 1.21503 1.02159 1.06328 1.01420 1.18939 0.91300 0.94603 0.94900 1.42001 1.29962 1.23985 1.30269 1.17280 0.81649 0.80611 0.85045 1.90767 1.61802 1.62940 1.22228 1.19820 1.00374 0.88055 0.98498 1.21427 0.96562 1.00274 0.92144 1.20965 0.96941 0.95330 1.01123 1.20494 0.99180 0.94190 0.92371 1.21028 0.93161 0.92451 0.97506 1.70652 1.26119 1.14024 1.09447 1.22634 0.94534 0.98861 0.96842 1.23207 1.07773 0.92780 0.95879 1.42529 1.25334 1.12855 1.20048 1.77373 1.03414 1.15719 1.16023 0.92216 0.93455 0.94603 0.81231 0.82115 0.74969 0.82582 0.82947 0.82591 0.79826 0.78789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 13.65 55.43 0.76 -24.96 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.33 29.90 -169.99 -5.08 19.24 16 4 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.61 -16.63 9.24 -34.44 -0.32 -16.95 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.25 6.04 5.57 -5.20 -0.03 6.01 16 10 N -0.31 -6.97 3.67 -62.56 -0.23 -7.19 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.28 -5.25 9.61 -39.83 -0.38 -5.63 16 13 C 0.26 4.79 8.10 -154.48 -1.25 3.54 16 14 N -0.61 -8.68 5.39 -12.23 -0.07 -8.74 16 15 C 0.57 7.84 7.71 -12.71 -0.10 7.75 16 16 O -0.50 -8.11 11.78 5.21 0.06 -8.05 16 17 C 0.04 0.44 6.78 -81.86 -0.56 -0.11 16 18 C -0.08 -0.64 9.53 -39.17 -0.37 -1.01 16 19 C -0.12 -0.75 10.04 -39.68 -0.40 -1.15 16 20 C -0.04 -0.34 10.09 -39.29 -0.40 -0.73 16 21 C 0.20 2.35 7.80 -156.02 -1.22 1.13 16 22 N -0.48 -6.16 11.31 -12.76 -0.14 -6.30 16 23 C 0.02 0.26 11.83 -17.94 -0.21 0.05 16 24 C -0.06 -0.76 10.80 -16.58 -0.18 -0.94 16 25 N -0.34 -4.14 2.97 -58.75 -0.17 -4.31 16 26 N -0.29 -6.43 12.42 31.42 0.39 -6.04 16 27 H 0.27 7.43 7.22 -40.82 -0.29 7.13 16 28 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 29 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 30 H 0.17 2.58 8.06 -52.49 -0.42 2.15 16 31 H 0.16 2.85 5.92 -52.49 -0.31 2.53 16 32 H 0.41 4.46 6.82 -40.82 -0.28 4.19 16 33 H 0.16 0.78 6.33 -52.49 -0.33 0.45 16 34 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.18 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.20 2.27 6.67 -52.49 -0.35 1.92 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -34.64 325.34 -8.58 -43.22 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.29 Total: 4.91 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -5.71 Total: -6.68 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.53 Total: -57.55 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.06 Total: -8.05 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.64 -8.58 -43.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776932041.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.130 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds