Wall clock time and date at job start Fri Apr 10 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30409 * 125.97758 * 2 1 4 4 N 1.39927 * 108.96035 * 180.26494 * 3 2 1 5 5 C 1.46501 * 125.74829 * 179.73580 * 4 3 2 6 6 C 1.34342 * 108.50068 * 359.73847 * 4 3 2 7 7 Cl 1.73600 * 126.31897 * 180.02562 * 6 4 3 8 8 C 1.38279 * 107.36414 * 359.97438 * 6 4 3 9 9 C 1.47301 * 126.43620 * 179.97438 * 8 6 4 10 10 O 1.21615 * 120.00112 * 90.02779 * 9 8 6 11 11 N 1.34773 * 119.99631 * 270.02277 * 9 8 6 12 12 C 1.46926 * 120.62904 * 180.02562 * 11 9 8 13 13 C 1.53192 * 108.77820 * 233.58715 * 12 11 9 14 14 C 1.53033 * 109.31270 * 305.36633 * 13 12 11 15 15 C 1.50703 * 109.44981 * 181.37637 * 14 13 12 16 16 H 1.08000 * 120.00140 * 239.93856 * 15 14 13 17 17 C 1.37880 * 119.99924 * 59.94065 * 15 14 13 18 18 N 1.31518 * 119.99822 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00061 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47017 * 89.99251 * 19 17 15 21 21 H 1.48496 * 109.47197 * 209.99632 * 19 17 15 22 22 H 1.48506 * 109.46922 * 329.99863 * 19 17 15 23 23 C 1.53041 * 109.53898 * 61.36218 * 14 13 12 24 24 C 1.46927 * 120.63516 * 359.97438 * 11 9 8 25 25 H 1.08993 * 109.47043 * 270.17382 * 1 2 3 26 26 H 1.09007 * 109.47261 * 30.16977 * 1 2 3 27 27 H 1.08998 * 109.47260 * 150.17326 * 1 2 3 28 28 H 1.09004 * 109.47203 * 269.99995 * 5 4 3 29 29 H 1.09001 * 109.47246 * 30.00081 * 5 4 3 30 30 H 1.08997 * 109.47069 * 150.00350 * 5 4 3 31 31 H 1.09006 * 109.58406 * 353.37631 * 12 11 9 32 32 H 1.09002 * 109.59019 * 113.79619 * 12 11 9 33 33 H 1.09000 * 109.49511 * 65.31256 * 13 12 11 34 34 H 1.08995 * 109.49883 * 185.40976 * 13 12 11 35 35 H 1.09002 * 109.45686 * 301.34174 * 14 13 12 36 36 H 0.96994 * 119.99645 * 180.02562 * 18 17 15 37 37 H 1.09005 * 109.49689 * 178.68550 * 23 14 13 38 38 H 1.08994 * 109.52286 * 58.60459 * 23 14 13 39 39 H 1.08997 * 109.58859 * 246.20187 * 24 11 9 40 40 H 1.09001 * 109.58530 * 6.48424 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6111 0.6458 -0.0061 5 6 4.7775 1.5323 -0.0136 6 6 3.6459 -0.6971 -0.0041 7 17 5.0708 -1.6888 -0.0091 8 6 2.3373 -1.1439 0.0039 9 6 1.8922 -2.5480 0.0081 10 8 1.7139 -3.1262 1.0631 11 7 1.6824 -3.1919 -1.1571 12 6 1.2379 -4.5922 -1.1691 13 6 2.1997 -5.4075 -2.0391 14 6 2.2950 -4.7665 -3.4255 15 6 3.2143 -5.5853 -4.2947 16 1 4.1037 -5.1371 -4.7125 17 6 2.9199 -6.9065 -4.5568 18 7 1.8371 -7.4524 -4.0476 19 14 4.0597 -7.9217 -5.6336 20 1 5.0881 -8.5770 -4.7861 21 1 3.2726 -8.9587 -6.3479 22 1 4.7248 -7.0361 -6.6230 23 6 2.8480 -3.3454 -3.2954 24 6 1.8928 -2.5066 -2.4396 25 1 -0.3633 0.0031 1.0276 26 1 -0.3634 0.8885 -0.5165 27 1 -0.3634 -0.8915 -0.5111 28 1 5.0615 1.7504 -1.0431 29 1 4.5309 2.4616 0.5000 30 1 5.6079 1.0444 0.4968 31 1 1.2420 -4.9856 -0.1525 32 1 0.2310 -4.6525 -1.5822 33 1 3.1863 -5.4212 -1.5761 34 1 1.8279 -6.4276 -2.1348 35 1 1.3040 -4.7306 -3.8778 36 1 1.6302 -8.3820 -4.2317 37 1 2.9375 -2.8978 -4.2853 38 1 3.8286 -3.3782 -2.8208 39 1 0.9393 -2.3971 -2.9562 40 1 2.3268 -1.5227 -2.2613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782053494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:33 Heat of formation + Delta-G solvation = 11.427509 kcal Electronic energy + Delta-G solvation = -24266.218778 eV Core-core repulsion = 20721.588929 eV Total energy + Delta-G solvation = -3544.629849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.66570 -40.72075 -38.33698 -38.15132 -35.40167 -35.10004 -32.95388 -32.19102 -31.21339 -30.41425 -28.13014 -26.92681 -24.91968 -24.06764 -23.05537 -21.78482 -21.07049 -19.95219 -18.73050 -18.32875 -17.63141 -16.96099 -16.70540 -16.50552 -16.37162 -15.43289 -15.00420 -14.90906 -14.61198 -14.46601 -14.41607 -14.18866 -13.79139 -13.70739 -13.57520 -13.36636 -13.26214 -13.02332 -12.86518 -12.80513 -12.76969 -12.45512 -12.14975 -11.95611 -11.89146 -11.40841 -11.17261 -10.92897 -10.79233 -10.38424 -10.36143 -9.74472 -9.56337 -8.05238 -6.18407 0.14857 0.25867 1.15836 1.42187 1.44066 1.44793 1.46842 1.52924 2.15753 2.45654 3.18532 3.21743 3.70781 3.73255 4.08503 4.17270 4.22379 4.31698 4.33549 4.39449 4.54856 4.58623 4.59009 4.70955 4.73561 4.76245 4.88555 4.90482 4.99919 5.19442 5.24535 5.28118 5.47550 5.49275 5.54098 5.69731 6.01172 6.13733 6.28348 6.41231 6.46947 6.92221 7.11984 7.49412 8.98318 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.004194 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.605255 B = 6674.023525 C = 7280.965877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.116 3.884 3 N -0.280 5.280 4 N -0.347 5.347 5 C 0.081 3.919 6 C 0.153 3.847 7 Cl 0.018 6.982 8 C -0.273 4.273 9 C 0.597 3.403 10 O -0.579 6.579 11 N -0.588 5.588 12 C 0.120 3.880 13 C -0.110 4.110 14 C 0.048 3.952 15 C -0.531 4.531 16 H 0.051 0.949 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.947 3.053 20 H -0.281 1.281 21 H -0.284 1.284 22 H -0.268 1.268 23 C -0.113 4.113 24 C 0.120 3.880 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.075 0.925 35 H 0.007 0.993 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 18.915 6.585 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.104 5.104 4 N -0.128 5.128 5 C -0.058 4.058 6 C -0.005 4.005 7 Cl 0.046 6.954 8 C -0.290 4.290 9 C 0.384 3.616 10 O -0.460 6.460 11 N -0.319 5.319 12 C -0.002 4.002 13 C -0.149 4.149 14 C 0.029 3.971 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.774 3.226 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.151 4.151 24 C -0.002 4.002 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.025 0.975 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.791 19.738 7.105 21.162 hybrid contribution 0.962 -2.087 -0.560 2.365 sum 3.753 17.650 6.545 19.195 Atomic orbital electron populations 1.20405 0.83673 1.04826 1.04604 1.22642 0.98300 0.87494 0.96538 1.77207 0.85300 1.21367 1.26531 1.48697 1.07284 1.02331 1.54513 1.22505 0.82687 0.94561 1.06056 1.21963 0.89793 0.85042 1.03733 1.98455 1.34869 1.65509 1.96567 1.19707 0.91588 0.94549 1.23114 1.17428 0.76318 0.84850 0.83010 1.90721 1.54272 1.68809 1.32180 1.48175 1.64783 1.12791 1.06101 1.21658 0.98060 0.80007 1.00499 1.21762 0.96236 1.00838 0.96027 1.18592 0.95188 0.91173 0.92139 1.21552 1.08867 0.96372 1.30095 0.93085 1.25653 0.96485 0.98980 0.97153 1.69966 1.26312 1.13486 1.45562 0.85724 0.79069 0.78642 0.79209 1.20689 1.21003 1.19293 1.21854 0.97838 0.96617 0.98810 1.21790 1.00300 0.95318 0.82798 0.88898 0.87870 0.90340 0.87931 0.86491 0.87754 0.91054 0.91159 0.96023 0.90627 0.97465 0.93064 0.91156 0.93658 0.90237 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.28 71.24 0.73 -0.78 16 2 C 0.12 3.02 7.26 43.53 0.32 3.33 16 3 N -0.28 -6.89 12.49 -46.66 -0.58 -7.48 16 4 N -0.35 -7.70 3.98 -357.40 -1.42 -9.13 16 5 C 0.08 0.95 11.28 127.77 1.44 2.39 16 6 C 0.15 4.15 7.42 84.32 0.63 4.78 16 7 Cl 0.02 0.47 28.56 -2.72 -0.08 0.39 16 8 C -0.27 -8.38 3.87 -20.12 -0.08 -8.46 16 9 C 0.60 21.86 7.08 86.63 0.61 22.48 16 10 O -0.58 -25.13 16.52 -4.08 -0.07 -25.19 16 11 N -0.59 -21.31 2.97 -822.83 -2.44 -23.76 16 12 C 0.12 4.83 6.43 86.36 0.56 5.38 16 13 C -0.11 -5.18 5.15 30.67 0.16 -5.02 16 14 C 0.05 2.27 2.06 -11.51 -0.02 2.24 16 15 C -0.53 -28.30 8.56 25.60 0.22 -28.08 16 16 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 17 C 0.02 0.87 5.30 84.65 0.45 1.32 16 18 N -0.91 -51.34 11.30 21.45 0.24 -51.10 16 19 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.11 -4.34 5.30 30.69 0.16 -4.18 16 24 C 0.12 3.88 6.34 86.38 0.55 4.43 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.08 1.62 8.01 -2.39 -0.02 1.60 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.97 7.77 -2.39 -0.02 0.95 16 31 H 0.07 2.96 7.00 -2.38 -0.02 2.94 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 4.01 6.03 -2.39 -0.01 3.99 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.08 2.46 6.25 -2.39 -0.01 2.44 16 Total: -1.00 -67.35 345.57 4.44 -62.91 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.05 Total: 8.58 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.72 Total: -0.16 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -4.21 Total: -91.46 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.07 Total: -25.19 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.08 Total: 0.39 kcal Total: -67.35 4.44 -62.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782053494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.333 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds