Wall clock time and date at job start Fri Apr 10 2020 22:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47124 * 270.00300 * 3 2 1 5 5 H 1.48504 * 109.47136 * 30.00219 * 3 2 1 6 6 H 1.48498 * 109.47395 * 150.00010 * 3 2 1 7 7 C 1.38657 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00114 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99656 * 179.97438 * 7 2 1 10 10 C 1.35751 * 116.99959 * 185.05862 * 9 7 2 11 11 C 1.38886 * 120.06942 * 354.46593 * 10 9 7 12 12 C 1.38100 * 119.93153 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06622 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.92844 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.47016 * 90.00062 * 14 13 12 16 16 C 1.38399 * 120.00001 * 179.97438 * 15 14 13 17 17 C 1.36479 * 120.24128 * 0.02562 * 16 15 14 18 18 N 1.32988 * 121.00538 * 179.97438 * 17 16 15 19 19 C 1.31345 * 121.38224 * 359.97438 * 18 17 16 20 20 C 1.40551 * 119.84149 * 0.28013 * 19 18 17 21 21 N 1.32653 * 133.77717 * 180.44775 * 20 19 18 22 22 C 1.32547 * 109.70993 * 179.51415 * 21 20 19 23 23 N 1.31351 * 109.66972 * 359.72760 * 22 21 20 24 24 N 1.36340 * 120.23768 * 179.97438 * 16 15 14 25 25 C 1.38299 * 120.13789 * 0.25330 * 13 12 11 26 26 C 1.38097 * 120.07217 * 359.45032 * 25 13 12 27 27 H 0.96999 * 119.99965 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.03094 * 0.02562 * 11 10 9 29 29 H 1.07994 * 119.96557 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.47344 * 330.00627 * 14 13 12 31 31 H 1.09000 * 109.47480 * 210.00093 * 14 13 12 32 32 H 0.97003 * 120.00152 * 0.02562 * 15 14 13 33 33 H 1.08002 * 119.49240 * 359.97438 * 17 16 15 34 34 H 1.08000 * 120.08224 * 180.02562 * 19 18 17 35 35 H 1.08000 * 125.16896 * 179.70660 * 22 21 20 36 36 H 1.08006 * 119.96239 * 179.70268 * 25 13 12 37 37 H 1.07998 * 120.03783 * 180.27711 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4057 -0.1061 11 6 3.2234 -3.5746 -0.0921 12 6 3.8533 -4.7988 -0.1997 13 6 5.2296 -4.8616 -0.3207 14 6 5.9138 -6.1993 -0.4373 15 7 6.0174 -6.5733 -1.8500 16 6 6.6140 -7.7699 -2.2071 17 6 7.1071 -8.6055 -1.2472 18 7 7.6829 -9.7591 -1.5731 19 6 7.7977 -10.1363 -2.8260 20 6 7.3108 -9.3092 -3.8528 21 7 7.2730 -9.4130 -5.1747 22 6 6.6863 -8.3422 -5.6906 23 7 6.3266 -7.5271 -4.7255 24 7 6.7125 -8.1231 -3.5202 25 6 5.9797 -3.6997 -0.3291 26 6 5.3552 -2.4722 -0.2281 27 1 -0.4850 0.8400 0.0004 28 1 2.1487 -3.5261 0.0028 29 1 3.2706 -5.7080 -0.1893 30 1 5.3334 -6.9521 0.0962 31 1 6.9121 -6.1358 -0.0042 32 1 5.6684 -5.9819 -2.5352 33 1 7.0285 -8.3255 -0.2071 34 1 8.2687 -11.0778 -3.0669 35 1 6.5282 -8.1665 -6.7444 36 1 7.0547 -3.7523 -0.4189 37 1 5.9411 -1.5650 -0.2392 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782946804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:35 Heat of formation + Delta-G solvation = 124.278441 kcal Electronic energy + Delta-G solvation = -23576.437425 eV Core-core repulsion = 19935.593666 eV Total energy + Delta-G solvation = -3640.843759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.95182 -41.05513 -40.18839 -38.86156 -37.26815 -34.72045 -34.37882 -32.51207 -31.97046 -31.76455 -29.94292 -27.82225 -26.42833 -25.49843 -24.72807 -23.78161 -22.69321 -22.13534 -20.04615 -19.81190 -19.15897 -18.92676 -17.81475 -17.65934 -16.82308 -16.71955 -16.56646 -16.07176 -15.74050 -15.71348 -15.41393 -15.11759 -15.04144 -14.42498 -14.27142 -14.21513 -14.06762 -13.74791 -13.25312 -13.07655 -12.88015 -12.61148 -12.50757 -12.39754 -11.98158 -11.44852 -11.36575 -11.10201 -11.09869 -10.96483 -10.80309 -9.89204 -9.18132 -8.59104 -8.55479 -6.28935 -0.32203 -0.21980 0.33396 0.49802 0.72945 1.29280 1.32303 1.48718 1.62005 1.94488 2.23501 2.48630 2.72529 2.86697 2.99017 3.08923 3.13068 3.54807 3.68983 3.77671 3.95507 3.96693 4.08332 4.37546 4.46500 4.50289 4.53950 4.74126 4.83991 4.89785 5.10587 5.16056 5.18963 5.27683 5.31080 5.47754 5.62916 5.72422 5.73454 5.83976 6.10108 6.14588 6.67394 6.78526 6.79449 7.50904 8.55811 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.002496 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.845546 B =11213.094319 C =11642.174447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.401 4.401 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.131 3.869 11 C -0.243 4.243 12 C -0.047 4.047 13 C -0.180 4.180 14 C 0.181 3.819 15 N -0.704 5.704 16 C 0.403 3.597 17 C -0.068 4.068 18 N -0.383 5.383 19 C 0.069 3.931 20 C 0.256 3.744 21 N -0.556 5.556 22 C 0.243 3.757 23 N -0.371 5.371 24 N -0.320 5.320 25 C -0.042 4.042 26 C -0.197 4.197 27 H 0.286 0.714 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.409 0.591 33 H 0.212 0.788 34 H 0.212 0.788 35 H 0.262 0.738 36 H 0.158 0.842 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.862 -17.053 -3.579 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.100 0.900 9 O -0.148 6.148 10 C 0.081 3.919 11 C -0.262 4.262 12 C -0.065 4.065 13 C -0.182 4.182 14 C 0.059 3.941 15 N -0.332 5.332 16 C 0.183 3.817 17 C -0.223 4.223 18 N -0.094 5.094 19 C -0.111 4.111 20 C 0.001 3.999 21 N -0.288 5.288 22 C -0.057 4.057 23 N -0.202 5.202 24 N -0.104 5.104 25 C -0.060 4.060 26 C -0.216 4.216 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.155 0.845 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.245 0.755 33 H 0.229 0.771 34 H 0.229 0.771 35 H 0.278 0.722 36 H 0.175 0.825 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.724 -16.617 -3.048 23.772 hybrid contribution -1.259 1.756 -1.022 2.390 sum 15.465 -14.861 -4.070 21.830 Atomic orbital electron populations 1.69724 1.06970 1.29743 1.49673 1.25298 0.95867 1.02246 0.95376 0.85220 0.78886 0.77390 0.79263 1.19189 1.19222 1.18478 1.20707 0.78011 0.96161 1.52851 0.89982 1.83523 1.21317 1.27641 1.82368 1.19793 0.93342 0.85080 0.93713 1.21291 1.00312 0.93265 1.11375 1.20983 0.94592 0.96188 0.94781 1.19497 0.92864 0.94887 1.10911 1.20512 1.02283 0.92677 0.78584 1.45140 1.60570 1.17213 1.10278 1.19047 0.93385 0.89753 0.79542 1.22248 1.08644 0.91903 0.99540 1.67817 1.08730 1.13959 1.18873 1.22770 1.03860 1.01147 0.83350 1.23483 0.95573 0.87066 0.93742 1.70825 1.27795 1.26375 1.03764 1.27020 0.90850 0.86032 1.01792 1.78440 1.30409 1.23204 0.88185 1.48077 1.39587 1.16993 1.05735 1.21017 1.00540 0.89871 0.94571 1.20552 0.90457 1.00065 1.10541 0.90470 0.87497 0.84527 0.88171 0.87259 0.75455 0.77138 0.77115 0.72215 0.82481 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 13.96 21.61 0.30 -53.65 16 2 C 0.01 0.62 5.49 84.83 0.47 1.09 16 3 Si 0.97 44.16 28.62 68.60 1.96 46.12 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.40 -22.87 9.95 67.92 0.68 -22.20 16 8 H 0.08 4.90 5.44 -2.91 -0.02 4.89 16 9 O -0.24 -12.52 8.59 -22.76 -0.20 -12.72 16 10 C 0.13 5.63 6.65 22.58 0.15 5.78 16 11 C -0.24 -9.71 9.17 22.39 0.21 -9.51 16 12 C -0.05 -1.35 9.69 22.25 0.22 -1.14 16 13 C -0.18 -4.07 5.25 -19.83 -0.10 -4.17 16 14 C 0.18 2.50 5.01 85.63 0.43 2.93 16 15 N -0.70 -12.35 5.70 -348.46 -1.99 -14.33 16 16 C 0.40 7.65 7.70 131.42 1.01 8.66 16 17 C -0.07 -1.04 10.39 84.11 0.87 -0.17 16 18 N -0.38 -6.60 10.41 -194.87 -2.03 -8.62 16 19 C 0.07 1.19 11.32 85.33 0.97 2.16 16 20 C 0.26 5.67 7.92 134.02 1.06 6.73 16 21 N -0.56 -12.67 11.24 -198.07 -2.23 -14.89 16 22 C 0.24 4.93 12.98 180.79 2.35 7.28 16 23 N -0.37 -9.11 12.79 -61.30 -0.78 -9.89 16 24 N -0.32 -7.41 3.98 -190.62 -0.76 -8.17 16 25 C -0.04 -1.02 9.69 22.25 0.22 -0.80 16 26 C -0.20 -6.63 9.99 22.39 0.22 -6.41 16 27 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.11 4.85 5.64 -2.91 -0.02 4.83 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.10 1.05 7.86 -2.39 -0.02 1.03 16 31 H 0.11 0.96 7.86 -2.39 -0.02 0.94 16 32 H 0.41 8.69 8.59 -92.71 -0.80 7.89 16 33 H 0.21 1.89 6.59 -2.91 -0.02 1.87 16 34 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.26 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -71.07 328.37 3.37 -67.70 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.35 Total: 18.23 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 8.74 Total: -9.77 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -7.48 Total: -109.56 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.20 Total: -12.72 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.96 Total: 46.12 kcal Total: -71.07 3.37 -67.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782946804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.977 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds