Wall clock time and date at job start Fri Apr 10 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34658 * 116.99702 * 2 1 4 4 O 1.21511 * 119.99977 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99527 * 179.97438 * 3 2 1 6 6 C 1.40074 * 119.99741 * 185.41734 * 5 3 2 7 7 C 1.38714 * 120.04286 * 21.24433 * 6 5 3 8 8 C 1.38736 * 119.89125 * 179.97438 * 7 6 5 9 9 N 1.40050 * 120.01812 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00069 * 146.39318 * 9 8 7 11 11 O 1.21591 * 119.99944 * 354.64330 * 10 9 8 12 12 N 1.34779 * 120.00216 * 174.64089 * 10 9 8 13 13 C 1.46498 * 120.00068 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46930 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00021 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99881 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99907 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47294 * 89.99975 * 18 16 14 20 20 H 1.48498 * 109.47363 * 210.00522 * 18 16 14 21 21 H 1.48505 * 109.46984 * 330.00341 * 18 16 14 22 22 C 1.38886 * 119.96661 * 359.97438 * 8 7 6 23 23 C 1.38187 * 120.08775 * 0.02562 * 22 8 7 24 24 C 1.38323 * 120.11094 * 359.97438 * 23 22 8 25 25 F 1.35094 * 119.98868 * 180.27799 * 24 23 22 26 26 H 1.08995 * 109.46890 * 300.00261 * 1 2 3 27 27 H 1.08996 * 109.46811 * 59.99749 * 1 2 3 28 28 H 1.08995 * 109.46563 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99847 * 5.41805 * 5 3 2 30 30 H 1.08007 * 120.05488 * 359.95191 * 7 6 5 31 31 H 0.97003 * 120.00168 * 326.39619 * 9 8 7 32 32 H 0.97007 * 119.99620 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.47400 * 300.00444 * 13 12 10 34 34 H 1.09002 * 109.46728 * 60.00746 * 13 12 10 35 35 H 0.97004 * 119.99961 * 179.97438 * 17 16 14 36 36 H 1.08007 * 119.95826 * 179.97438 * 22 8 7 37 37 H 1.07991 * 119.94445 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 0.0005 5 7 3.4093 1.2703 0.0005 6 6 4.0454 2.5130 0.1151 7 6 3.3657 3.5938 0.6573 8 6 3.9990 4.8231 0.7698 9 7 3.3150 5.9162 1.3164 10 6 3.9835 6.8361 2.0398 11 8 5.1592 6.6676 2.3004 12 7 3.3489 7.9428 2.4744 13 6 4.0754 8.9424 3.2613 14 6 3.1450 10.0724 3.6201 15 1 2.1156 10.0484 3.2942 16 6 3.6081 11.1372 4.3635 17 7 2.7963 12.1234 4.6762 18 14 5.3887 11.1789 4.9266 19 1 6.2175 11.8571 3.8978 20 1 5.4852 11.9219 6.2087 21 1 5.8791 9.7907 5.1208 22 6 5.3116 4.9691 0.3400 23 6 5.9877 3.8917 -0.2000 24 6 5.3596 2.6645 -0.3138 25 9 6.0247 1.6115 -0.8369 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 3.9374 0.4605 -0.0784 30 1 2.3450 3.4786 0.9911 31 1 2.3602 6.0112 1.1743 32 1 2.4109 8.0771 2.2668 33 1 4.4550 8.4814 4.1731 34 1 4.9091 9.3299 2.6757 35 1 3.1221 12.8724 5.1995 36 1 5.8043 5.9263 0.4272 37 1 7.0081 4.0080 -0.5338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785768200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:37 Heat of formation + Delta-G solvation = -110.513428 kcal Electronic energy + Delta-G solvation = -24721.612744 eV Core-core repulsion = 20607.525670 eV Total energy + Delta-G solvation = -4114.087075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.02502 -41.30185 -40.25697 -38.72611 -37.02450 -35.57480 -34.40137 -34.12285 -32.38383 -30.42893 -29.35477 -27.85675 -27.44807 -23.92602 -23.23339 -22.10898 -21.52863 -20.37887 -19.50465 -18.47376 -18.19124 -17.64342 -17.04918 -16.94023 -16.46144 -16.22905 -15.76795 -15.52739 -14.95237 -14.52645 -14.42194 -14.28326 -14.20576 -13.94850 -13.37133 -13.24963 -13.02597 -12.72514 -12.51268 -12.41819 -12.31992 -11.83235 -11.30053 -11.18093 -11.02886 -10.80580 -10.62120 -10.06369 -9.97355 -9.69956 -9.51382 -8.82355 -8.63816 -8.30297 -7.84204 -6.24128 -4.26925 0.94152 1.08940 1.60434 2.34811 2.92098 3.25503 3.32846 3.34183 3.40585 3.69088 3.78428 4.03875 4.30971 4.61416 4.69788 4.72477 4.81431 5.02450 5.05953 5.11256 5.15030 5.20558 5.42031 5.79477 5.81701 5.96217 6.18503 6.26099 6.44249 6.64678 6.82877 6.94325 7.03374 7.10759 7.25106 7.42293 7.76093 8.19582 8.51992 8.73826 8.96943 9.35347 10.87717 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002795 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.215329 B =10016.428370 C =11190.500176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.368 6.368 3 C 0.650 3.350 4 O -0.547 6.547 5 N -0.642 5.642 6 C 0.149 3.851 7 C -0.148 4.148 8 C 0.200 3.800 9 N -0.690 5.690 10 C 0.693 3.307 11 O -0.584 6.584 12 N -0.713 5.713 13 C 0.237 3.763 14 C -0.545 4.545 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.891 5.891 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.110 4.110 23 C -0.106 4.106 24 C 0.042 3.958 25 F -0.142 7.142 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.421 0.579 30 H 0.165 0.835 31 H 0.409 0.591 32 H 0.396 0.604 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.268 0.732 36 H 0.151 0.849 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -24.437 -11.565 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.281 6.281 3 C 0.404 3.596 4 O -0.435 6.435 5 N -0.292 5.292 6 C 0.054 3.946 7 C -0.172 4.172 8 C 0.102 3.898 9 N -0.338 5.338 10 C 0.393 3.607 11 O -0.462 6.462 12 N -0.365 5.365 13 C 0.115 3.885 14 C -0.583 4.583 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.132 4.132 23 C -0.126 4.126 24 C 0.019 3.981 25 F -0.121 7.121 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.258 0.742 30 H 0.182 0.818 31 H 0.244 0.756 32 H 0.229 0.771 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.169 0.831 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.767 -23.896 -11.155 26.382 hybrid contribution 0.108 -0.293 0.083 0.323 sum -0.659 -24.189 -11.072 26.610 Atomic orbital electron populations 1.23303 0.73496 1.03901 1.03208 1.86254 1.24847 1.30340 1.86679 1.18021 0.82784 0.82580 0.76214 1.90961 1.64432 1.34269 1.53813 1.41727 1.03804 1.09161 1.74492 1.17042 0.90761 0.85212 1.01579 1.21100 1.03331 0.89568 1.03151 1.17319 0.92260 0.86229 0.93998 1.42791 1.12177 1.23792 1.55043 1.16100 0.85345 0.80349 0.78866 1.90893 1.14595 1.78267 1.62443 1.45464 1.14582 1.19912 1.56512 1.19447 0.92830 0.85995 0.90253 1.21066 0.98339 1.03229 1.35668 0.90206 1.24778 0.98006 0.94862 0.94927 1.69875 1.35670 1.09323 1.37981 0.86812 0.84904 0.79304 0.78647 1.19797 1.20897 1.18408 1.21189 0.93950 1.00381 0.97632 1.20829 1.00892 0.90287 1.00589 1.17157 0.90078 0.85616 1.05267 1.91450 1.80321 1.55483 1.84824 0.91390 0.91447 0.87605 0.74189 0.81828 0.75564 0.77066 0.95608 0.96009 0.92196 0.83128 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.56 101.05 1.07 1.38 16 2 O -0.37 -3.17 10.62 -40.37 -0.43 -3.60 16 3 C 0.65 7.00 8.59 54.06 0.46 7.47 16 4 O -0.55 -7.16 13.10 -19.28 -0.25 -7.41 16 5 N -0.64 -6.36 5.34 -14.22 -0.08 -6.44 16 6 C 0.15 1.77 6.49 -83.61 -0.54 1.23 16 7 C -0.15 -1.93 8.68 -39.22 -0.34 -2.28 16 8 C 0.20 2.84 6.27 -83.68 -0.52 2.32 16 9 N -0.69 -10.06 5.35 -14.22 -0.08 -10.13 16 10 C 0.69 13.02 8.30 -86.92 -0.72 12.30 16 11 O -0.58 -12.82 14.05 5.29 0.07 -12.74 16 12 N -0.71 -14.01 5.55 -66.41 -0.37 -14.38 16 13 C 0.24 5.68 4.50 -5.19 -0.02 5.66 16 14 C -0.55 -14.65 9.83 -34.44 -0.34 -14.99 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 18 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 C -0.11 -1.55 8.65 -39.36 -0.34 -1.89 16 23 C -0.11 -1.25 10.01 -39.57 -0.40 -1.65 16 24 C 0.04 0.48 7.30 -39.24 -0.29 0.19 16 25 F -0.14 -1.54 16.76 2.25 0.04 -1.50 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.42 3.14 8.49 -40.82 -0.35 2.80 16 30 H 0.16 2.18 5.52 -52.48 -0.29 1.89 16 31 H 0.41 4.76 8.84 -40.82 -0.36 4.40 16 32 H 0.40 6.77 8.34 -40.82 -0.34 6.43 16 33 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 34 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.15 2.36 6.43 -52.48 -0.34 2.02 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -33.17 328.61 -5.82 -39.00 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.71 Total: 9.39 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -2.08 Total: 11.82 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.25 Total: -56.33 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.61 Total: -23.75 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.17 -5.82 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785768200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.518 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds