Wall clock time and date at job start Fri Apr 10 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34658 * 116.99702 * 2 1 4 4 O 1.21511 * 119.99977 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99527 * 179.97438 * 3 2 1 6 6 C 1.40074 * 119.99741 * 185.41734 * 5 3 2 7 7 C 1.38714 * 120.04286 * 21.24433 * 6 5 3 8 8 C 1.38736 * 119.89125 * 179.97438 * 7 6 5 9 9 N 1.40050 * 120.01812 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00069 * 146.39318 * 9 8 7 11 11 O 1.21591 * 119.99944 * 354.64330 * 10 9 8 12 12 N 1.34779 * 120.00216 * 174.64089 * 10 9 8 13 13 C 1.46498 * 120.00068 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46930 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00021 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99881 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99907 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47294 * 89.99975 * 18 16 14 20 20 H 1.48498 * 109.47363 * 210.00522 * 18 16 14 21 21 H 1.48505 * 109.46984 * 330.00341 * 18 16 14 22 22 C 1.38886 * 119.96661 * 359.97438 * 8 7 6 23 23 C 1.38187 * 120.08775 * 0.02562 * 22 8 7 24 24 C 1.38323 * 120.11094 * 359.97438 * 23 22 8 25 25 F 1.35094 * 119.98868 * 180.27799 * 24 23 22 26 26 H 1.08995 * 109.46890 * 300.00261 * 1 2 3 27 27 H 1.08996 * 109.46811 * 59.99749 * 1 2 3 28 28 H 1.08995 * 109.46563 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99847 * 5.41805 * 5 3 2 30 30 H 1.08007 * 120.05488 * 359.95191 * 7 6 5 31 31 H 0.97003 * 120.00168 * 326.39619 * 9 8 7 32 32 H 0.97007 * 119.99620 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.47400 * 300.00444 * 13 12 10 34 34 H 1.09002 * 109.46728 * 60.00746 * 13 12 10 35 35 H 0.97004 * 119.99961 * 179.97438 * 17 16 14 36 36 H 1.08007 * 119.95826 * 179.97438 * 22 8 7 37 37 H 1.07991 * 119.94445 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 0.0005 5 7 3.4093 1.2703 0.0005 6 6 4.0454 2.5130 0.1151 7 6 3.3657 3.5938 0.6573 8 6 3.9990 4.8231 0.7698 9 7 3.3150 5.9162 1.3164 10 6 3.9835 6.8361 2.0398 11 8 5.1592 6.6676 2.3004 12 7 3.3489 7.9428 2.4744 13 6 4.0754 8.9424 3.2613 14 6 3.1450 10.0724 3.6201 15 1 2.1156 10.0484 3.2942 16 6 3.6081 11.1372 4.3635 17 7 2.7963 12.1234 4.6762 18 14 5.3887 11.1789 4.9266 19 1 6.2175 11.8571 3.8978 20 1 5.4852 11.9219 6.2087 21 1 5.8791 9.7907 5.1208 22 6 5.3116 4.9691 0.3400 23 6 5.9877 3.8917 -0.2000 24 6 5.3596 2.6645 -0.3138 25 9 6.0247 1.6115 -0.8369 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 3.9374 0.4605 -0.0784 30 1 2.3450 3.4786 0.9911 31 1 2.3602 6.0112 1.1743 32 1 2.4109 8.0771 2.2668 33 1 4.4550 8.4814 4.1731 34 1 4.9091 9.3299 2.6757 35 1 3.1221 12.8724 5.1995 36 1 5.8043 5.9263 0.4272 37 1 7.0081 4.0080 -0.5338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785768200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:37 Heat of formation + Delta-G solvation = -135.912990 kcal Electronic energy + Delta-G solvation = -24722.714152 eV Core-core repulsion = 20607.525670 eV Total energy + Delta-G solvation = -4115.188482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.93830 -42.18575 -41.51393 -39.82091 -37.89475 -36.64526 -36.07823 -35.33829 -34.36638 -31.42467 -30.65528 -29.22827 -28.32538 -24.86593 -24.74324 -23.38770 -22.71372 -21.75691 -20.41486 -19.97082 -19.16772 -18.60773 -18.44096 -17.89198 -17.73792 -17.28862 -16.78149 -16.69810 -16.56539 -15.97635 -15.83430 -15.17233 -15.04709 -15.00386 -14.75691 -14.56194 -14.38848 -14.18304 -13.90528 -13.65716 -13.04429 -13.02351 -12.77259 -12.70141 -12.21278 -11.91072 -11.90580 -11.65287 -11.57314 -11.40047 -10.99728 -10.90415 -10.03487 -9.58197 -8.94985 -8.38249 -6.45557 -0.07168 0.09276 0.85078 1.36105 1.37915 1.48490 1.50860 1.60803 2.00922 2.30461 2.60588 2.96976 2.97839 3.07427 3.28915 3.69852 4.05809 4.10426 4.20722 4.29425 4.36677 4.42903 4.71712 4.74694 4.83195 5.01310 5.05946 5.09884 5.13922 5.22618 5.28740 5.37896 5.46753 5.84862 5.91100 6.03763 6.21433 6.56505 6.97236 7.03422 7.19395 7.49099 8.76467 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002795 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.215329 B =10016.428370 C =11190.500176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.364 6.364 3 C 0.649 3.351 4 O -0.573 6.573 5 N -0.633 5.633 6 C 0.151 3.849 7 C -0.147 4.147 8 C 0.181 3.819 9 N -0.674 5.674 10 C 0.698 3.302 11 O -0.615 6.615 12 N -0.713 5.713 13 C 0.250 3.750 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.026 3.974 17 N -0.932 5.932 18 Si 0.939 3.061 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.257 1.257 22 C -0.124 4.124 23 C -0.098 4.098 24 C 0.051 3.949 25 F -0.133 7.133 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.433 0.567 30 H 0.162 0.838 31 H 0.423 0.577 32 H 0.407 0.593 33 H 0.015 0.985 34 H 0.017 0.983 35 H 0.272 0.728 36 H 0.133 0.867 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -26.593 -12.263 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.277 6.277 3 C 0.404 3.596 4 O -0.463 6.463 5 N -0.285 5.285 6 C 0.055 3.945 7 C -0.170 4.170 8 C 0.084 3.916 9 N -0.323 5.323 10 C 0.398 3.602 11 O -0.496 6.496 12 N -0.366 5.366 13 C 0.126 3.874 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.174 4.174 17 N -0.571 5.571 18 Si 0.762 3.238 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.181 1.181 22 C -0.146 4.146 23 C -0.117 4.117 24 C 0.028 3.972 25 F -0.112 7.112 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.273 0.727 30 H 0.180 0.820 31 H 0.261 0.739 32 H 0.243 0.757 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.048 -26.129 -11.894 28.708 hybrid contribution -0.223 0.217 0.208 0.375 sum -0.272 -25.912 -11.685 28.426 Atomic orbital electron populations 1.23630 0.71862 1.06090 1.03059 1.86281 1.26370 1.28920 1.86175 1.18161 0.82877 0.82872 0.75725 1.90945 1.65024 1.35324 1.54975 1.41664 1.03820 1.09011 1.73998 1.17083 0.90915 0.85644 1.00853 1.21034 1.03215 0.89427 1.03303 1.17455 0.92654 0.86383 0.95111 1.42480 1.12728 1.23021 1.54027 1.16074 0.84919 0.80409 0.78788 1.90869 1.16062 1.78968 1.63651 1.45152 1.15033 1.19822 1.56590 1.19036 0.92228 0.85865 0.90228 1.21271 0.97965 1.04121 1.35126 0.92301 1.25593 1.02103 0.94571 0.95153 1.69981 1.37718 1.10219 1.39177 0.85841 0.79951 0.79425 0.78587 1.18884 1.20075 1.18124 1.21110 0.94075 1.00449 0.98937 1.21010 1.01750 0.89570 0.99383 1.17108 0.89864 0.85693 1.04542 1.91479 1.80111 1.55038 1.84584 0.91673 0.91528 0.84264 0.72703 0.82050 0.73918 0.75699 0.96694 0.96542 0.91849 0.84916 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -5.57 10.62 -55.68 -0.59 -6.16 16 3 C 0.65 12.97 8.59 129.79 1.11 14.09 16 4 O -0.57 -14.40 13.10 19.81 0.26 -14.14 16 5 N -0.63 -11.33 5.34 -429.30 -2.29 -13.62 16 6 C 0.15 3.32 6.49 38.14 0.25 3.57 16 7 C -0.15 -3.67 8.68 22.50 0.20 -3.48 16 8 C 0.18 5.02 6.27 38.10 0.24 5.26 16 9 N -0.67 -19.31 5.35 -317.17 -1.70 -21.01 16 10 C 0.70 26.04 8.30 179.05 1.49 27.53 16 11 O -0.62 -26.97 14.05 -4.00 -0.06 -27.03 16 12 N -0.71 -27.96 5.55 -482.29 -2.68 -30.63 16 13 C 0.25 11.99 4.50 85.63 0.38 12.37 16 14 C -0.55 -29.71 9.83 25.60 0.25 -29.46 16 15 H 0.06 3.37 7.84 -2.91 -0.02 3.34 16 16 C 0.03 1.46 5.47 84.66 0.46 1.92 16 17 N -0.93 -55.29 13.96 21.45 0.30 -54.99 16 18 Si 0.94 43.36 27.47 68.60 1.88 45.24 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.26 -11.70 6.54 99.48 0.65 -11.05 16 22 C -0.12 -3.41 8.65 22.41 0.19 -3.22 16 23 C -0.10 -2.12 10.01 22.28 0.22 -1.90 16 24 C 0.05 1.06 7.30 22.49 0.16 1.22 16 25 F -0.13 -2.51 16.76 44.97 0.75 -1.76 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.43 5.45 8.49 -92.71 -0.79 4.66 16 30 H 0.16 4.17 5.52 -2.91 -0.02 4.15 16 31 H 0.42 9.56 8.84 -92.71 -0.82 8.74 16 32 H 0.41 13.91 8.34 -92.70 -0.77 13.14 16 33 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 34 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 36 H 0.13 4.17 6.43 -2.91 -0.02 4.16 16 37 H 0.17 2.77 8.06 -2.92 -0.02 2.74 16 Total: -1.00 -70.62 328.61 0.78 -69.84 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -1.26 Total: 24.70 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 6.16 Total: 29.56 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -6.37 Total: -120.26 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.39 Total: -47.33 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.75 Total: -1.76 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Total: -70.62 0.78 -69.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785768200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.071 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds