Wall clock time and date at job start Fri Apr 10 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48500 * 109.46919 * 240.00190 * 3 2 1 5 5 H 1.48495 * 109.47074 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47033 * 120.00330 * 3 2 1 7 7 C 1.38984 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.37321 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.36490 * 126.07451 * 180.02562 * 9 7 2 11 11 C 1.35686 * 107.50930 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08094 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00169 * 179.97438 * 12 11 10 14 14 O 1.21302 * 119.99712 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00153 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.46810 * 180.02562 * 15 13 12 17 17 C 1.39687 * 119.09006 * 270.01980 * 16 15 13 18 18 C 1.35652 * 121.72754 * 179.97438 * 17 16 15 19 19 C 1.41133 * 119.53232 * 0.03925 * 18 17 16 20 20 C 1.38244 * 134.81064 * 180.02562 * 19 18 17 21 21 N 1.33991 * 107.90445 * 179.97438 * 20 19 18 22 22 H 0.97001 * 125.02386 * 179.97438 * 21 20 19 23 23 N 1.39958 * 109.95453 * 0.02562 * 21 20 19 24 24 C 1.32064 * 108.96017 * 359.97438 * 23 21 20 25 25 C 1.35629 * 119.09216 * 90.00451 * 16 15 13 26 26 C 1.40647 * 107.83469 * 0.25665 * 11 10 9 27 27 N 1.30915 * 108.38849 * 359.55729 * 26 11 10 28 28 H 0.97000 * 120.00316 * 359.97438 * 1 2 3 29 29 H 1.07998 * 126.24522 * 0.03465 * 10 9 7 30 30 H 0.97007 * 120.00342 * 359.97438 * 12 11 10 31 31 H 1.08997 * 109.46662 * 59.99890 * 15 13 12 32 32 H 1.08998 * 109.47118 * 299.99813 * 15 13 12 33 33 H 1.07999 * 119.13844 * 359.97438 * 17 16 15 34 34 H 1.07996 * 120.23190 * 180.02562 * 18 17 16 35 35 H 1.07994 * 126.05393 * 359.95169 * 20 19 18 36 36 H 1.08002 * 120.20640 * 0.03864 * 25 16 15 37 37 H 1.07999 * 125.80576 * 179.70428 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2819 2.7464 -0.0006 6 1 3.1006 1.6964 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0001 9 7 1.3214 -2.3929 0.0016 10 6 1.8750 -3.6405 0.0027 11 6 0.8579 -4.5385 0.0029 12 7 0.9892 -5.9382 0.0045 13 6 -0.1100 -6.7182 0.0051 14 8 -1.2125 -6.2124 0.0047 15 6 0.0308 -8.2187 0.0062 16 6 -1.3369 -8.8514 0.0060 17 6 -1.9540 -9.1354 1.2266 18 6 -3.1841 -9.7038 1.2888 19 6 -3.8653 -10.0208 0.0941 20 6 -5.0897 -10.5868 -0.2086 21 7 -5.2003 -10.6400 -1.5429 22 1 -5.9643 -10.9940 -2.0245 23 7 -4.0501 -10.1103 -2.1390 24 6 -3.2154 -9.7231 -1.1918 25 6 -1.9348 -9.1292 -1.1793 26 6 -0.3512 -3.8199 -0.0041 27 7 -0.0715 -2.5410 0.0013 28 1 -0.4850 0.8400 0.0004 29 1 2.9302 -3.8708 0.0035 30 1 1.8709 -6.3427 0.0052 31 1 0.5763 -8.5317 0.8964 32 1 0.5763 -8.5331 -0.8836 33 1 -1.4383 -8.8961 2.1448 34 1 -3.6388 -9.9125 2.2459 35 1 -5.8265 -10.9264 0.5041 36 1 -1.4337 -8.8990 -2.1079 37 1 -1.3418 -4.2500 -0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793288145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:41 Heat of formation + Delta-G solvation = 145.496595 kcal Electronic energy + Delta-G solvation = -23642.810716 eV Core-core repulsion = 20002.887045 eV Total energy + Delta-G solvation = -3639.923671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31272 -39.86881 -38.75910 -37.17394 -34.10195 -33.10033 -32.44438 -31.99003 -30.18555 -28.93463 -28.49678 -27.14601 -24.79073 -23.56497 -21.76079 -20.90183 -20.75933 -20.03124 -19.31856 -18.17631 -17.46028 -16.77097 -16.33669 -15.66659 -15.38980 -15.17473 -14.95810 -14.92243 -14.11415 -14.01020 -13.91037 -13.29425 -13.12759 -12.96432 -12.78848 -12.04309 -11.78280 -11.69404 -11.59696 -11.51026 -11.34208 -11.19570 -10.90793 -10.52783 -10.37606 -10.35476 -10.06083 -9.13428 -9.10064 -8.74876 -8.62199 -7.99482 -7.65350 -6.62499 -6.50484 -4.17277 0.57047 1.77808 2.39638 2.57638 2.91677 3.07610 3.10673 3.11686 3.60266 3.74239 3.86249 4.06564 4.19060 4.47977 4.49547 4.79280 4.85862 5.01552 5.07060 5.14716 5.22397 5.38230 5.49897 5.52191 5.61801 5.68949 6.14588 6.30264 6.41228 6.48186 6.53391 6.68941 6.85145 6.93086 6.97127 7.03539 7.20788 7.31701 7.50545 7.91671 8.26899 8.36609 8.70610 8.96702 9.44194 9.73785 10.45545 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.002453 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.428365 B =11410.768213 C =11808.802671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.057 4.057 12 N -0.628 5.628 13 C 0.499 3.501 14 O -0.526 6.526 15 C -0.102 4.102 16 C -0.014 4.014 17 C -0.131 4.131 18 C -0.050 4.050 19 C -0.204 4.204 20 C 0.076 3.924 21 N -0.430 5.430 22 H 0.441 0.559 23 N -0.310 5.310 24 C 0.111 3.889 25 C -0.093 4.093 26 C -0.034 4.034 27 N -0.261 5.261 28 H 0.275 0.725 29 H 0.145 0.855 30 H 0.396 0.604 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.186 0.814 36 H 0.127 0.873 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -20.903 1.698 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.163 4.163 12 N -0.271 5.271 13 C 0.285 3.715 14 O -0.402 6.402 15 C -0.142 4.142 16 C -0.019 4.019 17 C -0.150 4.150 18 C -0.070 4.070 19 C -0.214 4.214 20 C -0.081 4.081 21 N -0.130 5.130 22 H 0.285 0.715 23 N -0.138 5.138 24 C -0.043 4.043 25 C -0.114 4.114 26 C -0.210 4.210 27 N -0.092 5.092 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.229 0.771 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.203 0.797 36 H 0.145 0.855 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.412 -19.278 0.386 20.027 hybrid contribution 0.913 -0.439 0.617 1.186 sum -4.499 -19.717 1.003 20.248 Atomic orbital electron populations 1.70211 1.06105 1.27997 1.35456 1.25631 0.95690 1.00220 0.95569 0.85908 0.79133 0.79742 0.79424 1.19201 1.20183 1.19192 1.19799 0.91590 0.80608 1.53598 0.86738 1.44531 1.04044 1.03275 1.39353 1.21262 0.96812 0.85422 1.20115 1.17276 0.94195 0.81438 1.23357 1.42530 1.08200 1.04464 1.71869 1.20210 0.84611 0.88142 0.78581 1.90633 1.25747 1.74804 1.48994 1.20718 0.95702 0.92709 1.05120 1.18771 0.94830 0.95444 0.92812 1.20400 0.96057 1.01378 0.97181 1.20133 0.94000 0.97458 0.95433 1.19654 0.95820 1.10772 0.95165 1.22644 0.98311 1.00798 0.86368 1.46288 1.16683 1.45095 1.04978 0.71479 1.77679 0.94708 1.23010 1.18415 1.20866 0.95185 0.97630 0.90586 1.19637 0.91863 1.01750 0.98172 1.24120 0.98102 0.90723 1.08013 1.78252 0.90114 1.15154 1.25700 0.91474 0.83764 0.77078 0.87971 0.88084 0.85985 0.85894 0.79714 0.85530 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.95 11.81 55.49 0.66 -21.30 16 2 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 3 Si 0.93 19.19 29.55 -169.99 -5.02 14.17 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.32 -8.69 10.25 -14.82 -0.15 -8.84 16 8 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 9 N -0.14 -4.02 3.74 -11.41 -0.04 -4.07 16 10 C -0.09 -2.03 11.49 -16.39 -0.19 -2.22 16 11 C -0.06 -1.33 6.90 -83.84 -0.58 -1.91 16 12 N -0.63 -10.99 5.47 -10.00 -0.05 -11.04 16 13 C 0.50 8.57 7.79 -10.98 -0.09 8.49 16 14 O -0.53 -11.48 13.19 5.54 0.07 -11.41 16 15 C -0.10 -1.18 5.77 -29.03 -0.17 -1.35 16 16 C -0.01 -0.18 4.33 -105.01 -0.45 -0.63 16 17 C -0.13 -1.60 9.51 -39.97 -0.38 -1.98 16 18 C -0.05 -0.56 10.09 -39.41 -0.40 -0.96 16 19 C -0.20 -2.48 6.33 -105.19 -0.67 -3.15 16 20 C 0.08 0.64 12.08 -16.61 -0.20 0.44 16 21 N -0.43 -3.94 7.18 30.84 0.22 -3.72 16 22 H 0.44 2.20 8.96 -182.70 -1.64 0.57 16 23 N -0.31 -4.31 12.70 33.25 0.42 -3.89 16 24 C 0.11 1.61 7.49 -83.05 -0.62 0.99 16 25 C -0.09 -1.33 9.65 -39.41 -0.38 -1.71 16 26 C -0.03 -0.92 10.85 -17.03 -0.18 -1.10 16 27 N -0.26 -7.76 10.40 30.80 0.32 -7.44 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.14 2.85 8.06 -52.49 -0.42 2.42 16 30 H 0.40 5.16 8.83 -40.82 -0.36 4.80 16 31 H 0.10 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.19 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.18 4.72 5.92 -52.49 -0.31 4.41 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -38.51 329.66 -7.82 -46.33 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.81 Total: 10.24 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -4.56 Total: -12.84 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 1.52 Total: -51.45 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.51 -7.82 -46.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793288145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.823 kcal (2) G-P(sol) polarization free energy of solvation -38.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds