Wall clock time and date at job start Fri Apr 10 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48500 * 109.46919 * 240.00190 * 3 2 1 5 5 H 1.48495 * 109.47074 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47033 * 120.00330 * 3 2 1 7 7 C 1.38984 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.37321 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.36490 * 126.07451 * 180.02562 * 9 7 2 11 11 C 1.35686 * 107.50930 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08094 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00169 * 179.97438 * 12 11 10 14 14 O 1.21302 * 119.99712 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00153 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.46810 * 180.02562 * 15 13 12 17 17 C 1.39687 * 119.09006 * 270.01980 * 16 15 13 18 18 C 1.35652 * 121.72754 * 179.97438 * 17 16 15 19 19 C 1.41133 * 119.53232 * 0.03925 * 18 17 16 20 20 C 1.38244 * 134.81064 * 180.02562 * 19 18 17 21 21 N 1.33991 * 107.90445 * 179.97438 * 20 19 18 22 22 H 0.97001 * 125.02386 * 179.97438 * 21 20 19 23 23 N 1.39958 * 109.95453 * 0.02562 * 21 20 19 24 24 C 1.32064 * 108.96017 * 359.97438 * 23 21 20 25 25 C 1.35629 * 119.09216 * 90.00451 * 16 15 13 26 26 C 1.40647 * 107.83469 * 0.25665 * 11 10 9 27 27 N 1.30915 * 108.38849 * 359.55729 * 26 11 10 28 28 H 0.97000 * 120.00316 * 359.97438 * 1 2 3 29 29 H 1.07998 * 126.24522 * 0.03465 * 10 9 7 30 30 H 0.97007 * 120.00342 * 359.97438 * 12 11 10 31 31 H 1.08997 * 109.46662 * 59.99890 * 15 13 12 32 32 H 1.08998 * 109.47118 * 299.99813 * 15 13 12 33 33 H 1.07999 * 119.13844 * 359.97438 * 17 16 15 34 34 H 1.07996 * 120.23190 * 180.02562 * 18 17 16 35 35 H 1.07994 * 126.05393 * 359.95169 * 20 19 18 36 36 H 1.08002 * 120.20640 * 0.03864 * 25 16 15 37 37 H 1.07999 * 125.80576 * 179.70428 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2819 2.7464 -0.0006 6 1 3.1006 1.6964 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0001 9 7 1.3214 -2.3929 0.0016 10 6 1.8750 -3.6405 0.0027 11 6 0.8579 -4.5385 0.0029 12 7 0.9892 -5.9382 0.0045 13 6 -0.1100 -6.7182 0.0051 14 8 -1.2125 -6.2124 0.0047 15 6 0.0308 -8.2187 0.0062 16 6 -1.3369 -8.8514 0.0060 17 6 -1.9540 -9.1354 1.2266 18 6 -3.1841 -9.7038 1.2888 19 6 -3.8653 -10.0208 0.0941 20 6 -5.0897 -10.5868 -0.2086 21 7 -5.2003 -10.6400 -1.5429 22 1 -5.9643 -10.9940 -2.0245 23 7 -4.0501 -10.1103 -2.1390 24 6 -3.2154 -9.7231 -1.1918 25 6 -1.9348 -9.1292 -1.1793 26 6 -0.3512 -3.8199 -0.0041 27 7 -0.0715 -2.5410 0.0013 28 1 -0.4850 0.8400 0.0004 29 1 2.9302 -3.8708 0.0035 30 1 1.8709 -6.3427 0.0052 31 1 0.5763 -8.5317 0.8964 32 1 0.5763 -8.5331 -0.8836 33 1 -1.4383 -8.8961 2.1448 34 1 -3.6388 -9.9125 2.2459 35 1 -5.8265 -10.9264 0.5041 36 1 -1.4337 -8.8990 -2.1079 37 1 -1.3418 -4.2500 -0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793288145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:41 Heat of formation + Delta-G solvation = 116.917277 kcal Electronic energy + Delta-G solvation = -23644.050008 eV Core-core repulsion = 20002.887045 eV Total energy + Delta-G solvation = -3641.162963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15602 -41.63912 -40.29301 -38.19642 -35.83608 -34.90042 -33.39803 -32.90016 -32.17765 -30.06835 -29.67708 -28.59420 -26.66936 -24.53469 -22.97505 -22.61690 -21.66018 -21.44211 -21.09011 -19.27562 -18.95497 -17.83393 -17.60605 -17.34332 -16.93799 -16.34375 -16.23989 -15.79512 -15.63698 -15.40468 -14.90780 -14.82685 -14.74889 -14.68953 -13.75465 -13.46094 -13.24997 -12.99046 -12.84631 -12.83731 -12.66316 -12.57256 -12.38903 -12.12993 -11.75207 -11.25777 -11.21780 -10.95775 -10.79605 -10.60255 -10.06693 -9.55377 -8.53914 -8.46580 -8.44378 -6.21307 -0.26190 0.86901 1.27569 1.40483 1.52668 1.57099 1.60651 1.91676 1.92410 2.10704 2.39743 2.58903 2.88617 3.09190 3.11588 3.34626 3.72046 3.93211 4.21590 4.21945 4.36880 4.44989 4.48647 4.63252 4.66491 4.68750 4.75756 4.84377 5.03034 5.14576 5.27736 5.33332 5.50283 5.56609 5.61329 5.76993 5.99139 6.02236 6.33182 6.36913 6.64433 6.77497 6.87627 7.48624 7.55253 7.73451 8.54998 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.002453 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.428365 B =11410.768213 C =11808.802671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.170 5.170 10 C -0.082 4.082 11 C -0.040 4.040 12 N -0.618 5.618 13 C 0.498 3.502 14 O -0.575 6.575 15 C -0.088 4.088 16 C -0.016 4.016 17 C -0.163 4.163 18 C -0.038 4.038 19 C -0.242 4.242 20 C 0.114 3.886 21 N -0.418 5.418 22 H 0.459 0.541 23 N -0.361 5.361 24 C 0.082 3.918 25 C -0.129 4.129 26 C -0.063 4.063 27 N -0.313 5.313 28 H 0.275 0.725 29 H 0.190 0.810 30 H 0.422 0.578 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.243 0.757 36 H 0.118 0.882 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -22.659 2.973 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.060 4.940 10 C -0.232 4.232 11 C -0.146 4.146 12 N -0.264 5.264 13 C 0.287 3.713 14 O -0.454 6.454 15 C -0.127 4.127 16 C -0.021 4.021 17 C -0.182 4.182 18 C -0.058 4.058 19 C -0.252 4.252 20 C -0.045 4.045 21 N -0.119 5.119 22 H 0.306 0.694 23 N -0.191 5.191 24 C -0.070 4.070 25 C -0.150 4.150 26 C -0.239 4.239 27 N -0.145 5.145 28 H 0.085 0.915 29 H 0.207 0.793 30 H 0.259 0.741 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.259 0.741 36 H 0.136 0.864 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.162 -21.109 1.634 21.577 hybrid contribution 0.375 -0.135 0.240 0.465 sum -3.786 -21.243 1.875 21.659 Atomic orbital electron populations 1.70408 1.08477 1.29051 1.37620 1.26904 0.96465 1.04420 0.94202 0.84647 0.77510 0.73694 0.80299 1.17740 1.20436 1.17587 1.20575 0.92953 0.80928 1.54092 0.84126 1.44833 1.03570 1.04872 1.40681 1.22034 0.98879 0.84165 1.18134 1.17356 0.92507 0.84185 1.20550 1.42503 1.10036 1.02036 1.71864 1.21258 0.83481 0.90310 0.76275 1.90624 1.27822 1.76210 1.50738 1.20760 0.95918 0.87663 1.08394 1.19008 0.95392 0.94763 0.92918 1.20676 0.97166 1.03050 0.97334 1.20561 0.93430 0.95217 0.96554 1.20124 0.97474 1.12850 0.94707 1.23516 0.97530 0.96934 0.86504 1.46358 1.16141 1.43790 1.05638 0.69384 1.77584 0.96444 1.25452 1.19613 1.21152 0.95635 0.98085 0.92144 1.19767 0.92843 1.03960 0.98471 1.24134 0.99082 0.91000 1.09650 1.78142 0.92148 1.16668 1.27532 0.91513 0.79347 0.74062 0.84016 0.85187 0.84453 0.82587 0.74130 0.86393 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.01 11.81 21.66 0.26 -48.76 16 2 C -0.01 -0.46 5.50 84.95 0.47 0.00 16 3 Si 1.02 39.29 29.55 68.60 2.03 41.32 16 4 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.35 -19.10 10.25 84.01 0.86 -18.24 16 8 H 0.14 6.51 7.83 -2.91 -0.02 6.49 16 9 N -0.17 -9.65 3.74 -190.01 -0.71 -10.36 16 10 C -0.08 -3.83 11.49 83.38 0.96 -2.87 16 11 C -0.04 -1.85 6.90 37.73 0.26 -1.59 16 12 N -0.62 -20.71 5.47 -303.93 -1.66 -22.37 16 13 C 0.50 16.79 7.79 87.66 0.68 17.47 16 14 O -0.58 -25.87 13.19 -3.10 -0.04 -25.91 16 15 C -0.09 -1.87 5.77 29.10 0.17 -1.70 16 16 C -0.02 -0.42 4.33 -20.12 -0.09 -0.50 16 17 C -0.16 -3.80 9.51 22.02 0.21 -3.59 16 18 C -0.04 -0.78 10.09 22.38 0.23 -0.55 16 19 C -0.24 -5.53 6.33 -20.23 -0.13 -5.65 16 20 C 0.11 1.58 12.08 84.36 1.02 2.60 16 21 N -0.42 -6.97 7.18 -56.35 -0.40 -7.38 16 22 H 0.46 3.67 8.96 -213.41 -1.91 1.75 16 23 N -0.36 -10.24 12.70 -48.70 -0.62 -10.86 16 24 C 0.08 2.44 7.49 42.16 0.32 2.76 16 25 C -0.13 -3.84 9.65 22.38 0.22 -3.62 16 26 C -0.06 -3.58 10.85 85.42 0.93 -2.66 16 27 N -0.31 -19.45 10.40 -56.46 -0.59 -20.03 16 28 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.19 6.84 8.06 -2.91 -0.02 6.82 16 30 H 0.42 9.67 8.83 -92.70 -0.82 8.86 16 31 H 0.14 1.92 8.07 -2.39 -0.02 1.90 16 32 H 0.13 2.04 8.06 -2.39 -0.02 2.02 16 33 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.24 0.40 8.06 -2.91 -0.02 0.37 16 36 H 0.12 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.16 9.39 5.92 -2.91 -0.02 9.38 16 Total: -1.00 -92.10 329.66 2.78 -89.32 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -1.58 Total: 33.18 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 6.10 Total: -18.14 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -3.73 Total: -119.76 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -92.10 2.78 -89.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793288145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.234 kcal (2) G-P(sol) polarization free energy of solvation -92.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds