Wall clock time and date at job start Fri Apr 10 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48507 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47171 * 299.99571 * 3 2 1 6 6 H 1.48502 * 109.47173 * 59.99790 * 3 2 1 7 7 C 1.37881 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99856 * 183.37552 * 7 2 1 9 9 C 1.50695 * 120.00139 * 3.37767 * 7 2 1 10 10 C 1.53002 * 115.54882 * 324.28867 * 9 7 2 11 11 N 1.46505 * 109.46921 * 306.27576 * 10 9 7 12 12 C 1.34781 * 119.99842 * 184.82596 * 11 10 9 13 13 O 1.21591 * 119.99766 * 5.11080 * 12 11 10 14 14 N 1.34773 * 120.00128 * 184.83581 * 12 11 10 15 15 N 1.40110 * 119.99529 * 356.06982 * 14 12 11 16 16 C 1.40021 * 119.99655 * 279.84860 * 15 14 12 17 17 C 1.38998 * 120.08555 * 343.24974 * 16 15 14 18 18 F 1.35100 * 120.04451 * 0.02562 * 17 16 15 19 19 C 1.38331 * 119.90890 * 179.70148 * 17 16 15 20 20 C 1.38274 * 120.08951 * 0.59842 * 19 17 16 21 21 C 1.38276 * 120.17128 * 359.67726 * 20 19 17 22 22 C 1.38339 * 120.08185 * 0.02562 * 21 20 19 23 23 F 1.35105 * 120.04044 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.49662 * 109.95500 * 9 7 2 25 25 C 1.53000 * 117.50275 * 178.61588 * 9 7 2 26 26 H 0.96993 * 120.00193 * 5.00557 * 1 2 3 27 27 H 1.08998 * 109.47040 * 186.28264 * 10 9 7 28 28 H 1.09002 * 109.47233 * 66.28065 * 10 9 7 29 29 H 0.96998 * 119.99999 * 4.82730 * 11 10 9 30 30 H 0.96993 * 120.00190 * 176.06572 * 14 12 11 31 31 H 0.96997 * 120.00031 * 99.85495 * 15 14 12 32 32 H 1.08008 * 119.95438 * 180.31922 * 19 17 16 33 33 H 1.08004 * 119.91727 * 179.70232 * 20 19 17 34 34 H 1.07999 * 119.96231 * 180.02562 * 21 20 19 35 35 H 1.09009 * 117.49464 * 214.99932 * 24 9 7 36 36 H 1.08997 * 117.50021 * 0.02562 * 24 9 7 37 37 H 1.09001 * 117.49420 * 359.97404 * 25 9 7 38 38 H 1.08997 * 117.50245 * 144.96964 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0832 -1.1949 0.0556 9 6 1.2531 -2.4981 -0.0758 10 6 -0.0870 -2.5316 0.6619 11 7 0.1112 -2.1184 2.0535 12 6 -0.9174 -2.1648 2.9232 13 8 -1.9840 -2.6360 2.5787 14 7 -0.7620 -1.6940 4.1764 15 7 0.4909 -1.2323 4.6009 16 6 1.4730 -2.1447 5.0051 17 6 1.1219 -3.4520 5.3210 18 9 -0.1681 -3.8447 5.2381 19 6 2.0960 -4.3521 5.7140 20 6 3.4158 -3.9496 5.8046 21 6 3.7682 -2.6485 5.4967 22 6 2.8007 -1.7441 5.0970 23 9 3.1460 -0.4728 4.7968 24 6 1.3667 -3.3041 -1.3713 25 6 2.0763 -3.7874 -0.1040 26 1 -0.4850 0.8368 -0.0733 27 1 -0.4900 -3.5440 0.6374 28 1 -0.7860 -1.8504 0.1766 29 1 0.9827 -1.8116 2.3489 30 1 -1.5175 -1.6747 4.7844 31 1 0.6778 -0.2806 4.6148 32 1 1.8247 -5.3694 5.9547 33 1 4.1734 -4.6534 6.1164 34 1 4.8001 -2.3378 5.5682 35 1 0.4867 -3.8583 -1.6980 36 1 1.9853 -2.8914 -2.1682 37 1 3.1616 -3.6924 -0.0678 38 1 1.6636 -4.6593 0.4033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797562641.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:45 Heat of formation + Delta-G solvation = -37.309969 kcal Electronic energy + Delta-G solvation = -26918.451515 eV Core-core repulsion = 22819.911570 eV Total energy + Delta-G solvation = -4098.539945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.88947 -49.83394 -41.07105 -39.74323 -38.57557 -37.21807 -34.68083 -34.09747 -32.84094 -31.17909 -29.06918 -27.81178 -27.03612 -23.93855 -23.66051 -22.99539 -21.75383 -21.16154 -19.53105 -19.39562 -19.11972 -18.47525 -17.88608 -17.44866 -16.90165 -16.76225 -16.50477 -16.25395 -16.13022 -16.03150 -15.67649 -15.58037 -15.16588 -14.92430 -14.36708 -13.71686 -13.63191 -13.40447 -13.28016 -12.97146 -12.78056 -12.70377 -12.60626 -12.29739 -12.06211 -11.97924 -11.59241 -11.24527 -10.87693 -10.71113 -10.65451 -10.18182 -9.70917 -9.60174 -8.77535 -7.96665 -6.20850 0.03747 0.17241 1.02806 1.38587 1.44328 1.52993 2.13712 2.39146 2.48643 2.51230 2.88974 3.05566 3.51462 3.60819 3.66809 3.92049 3.97828 4.24925 4.30737 4.51402 4.69332 4.74094 4.78726 4.83530 4.94407 5.07331 5.11607 5.17960 5.28115 5.33044 5.51254 5.58422 5.69760 5.80809 5.88809 5.94860 6.15824 6.35799 6.38195 6.81322 7.30271 7.43770 7.66132 8.90949 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.006311 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.843956 B = 4435.663917 C = 4951.170296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.037 3.963 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.057 0.943 9 C 0.007 3.993 10 C 0.193 3.807 11 N -0.685 5.685 12 C 0.703 3.297 13 O -0.635 6.635 14 N -0.518 5.518 15 N -0.535 5.535 16 C 0.123 3.877 17 C 0.040 3.960 18 F -0.144 7.144 19 C -0.121 4.121 20 C -0.095 4.095 21 C -0.113 4.113 22 C 0.050 3.950 23 F -0.141 7.141 24 C -0.194 4.194 25 C -0.187 4.187 26 H 0.257 0.743 27 H 0.014 0.986 28 H 0.077 0.923 29 H 0.399 0.601 30 H 0.428 0.572 31 H 0.428 0.572 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -5.235 14.222 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.068 3.932 11 N -0.336 5.336 12 C 0.403 3.597 13 O -0.515 6.515 14 N -0.274 5.274 15 N -0.270 5.270 16 C 0.021 3.979 17 C 0.016 3.984 18 F -0.123 7.123 19 C -0.140 4.140 20 C -0.115 4.115 21 C -0.132 4.132 22 C 0.026 3.974 23 F -0.120 7.120 24 C -0.233 4.233 25 C -0.224 4.224 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.095 0.905 29 H 0.234 0.766 30 H 0.274 0.726 31 H 0.272 0.728 32 H 0.179 0.821 33 H 0.199 0.801 34 H 0.189 0.811 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.341 -5.476 13.787 16.551 hybrid contribution -0.163 1.813 -0.147 1.826 sum 7.177 -3.663 13.640 15.842 Atomic orbital electron populations 1.70078 1.06680 1.26671 1.49204 1.25562 0.95375 1.01500 0.94054 0.85688 0.79306 0.80427 0.77314 1.19163 1.21206 1.20947 1.20686 0.92405 0.89506 1.51143 0.92518 1.19266 0.93334 0.90767 0.96048 1.20670 0.97712 0.95115 0.79677 1.44656 1.11540 1.67554 1.09823 1.16249 0.84099 0.78725 0.80642 1.90864 1.28668 1.54542 1.77382 1.44033 1.02243 1.69705 1.11400 1.42941 1.03932 1.06467 1.73684 1.18255 0.88147 0.90820 1.00679 1.17387 0.79930 0.92596 1.08461 1.91492 1.35292 1.91039 1.94479 1.21425 0.92564 1.00163 0.99848 1.21148 0.95479 0.95468 0.99390 1.21434 0.99932 0.93028 0.98796 1.17191 0.90278 0.81401 1.08575 1.91492 1.92343 1.36571 1.91558 1.22965 1.02026 1.05901 0.92389 1.22918 0.98443 0.98767 1.02276 0.93359 0.96830 0.90488 0.76575 0.72612 0.72782 0.82079 0.80085 0.81137 0.90571 0.90062 0.89661 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.07 10.17 21.45 0.22 -47.85 16 2 C 0.04 1.88 5.30 84.66 0.45 2.33 16 3 Si 0.95 41.40 29.54 68.60 2.03 43.42 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.50 -25.42 8.27 25.60 0.21 -25.21 16 8 H 0.06 2.88 7.82 -2.91 -0.02 2.85 16 9 C 0.01 0.31 2.07 -52.93 -0.11 0.20 16 10 C 0.19 9.65 4.63 86.38 0.40 10.05 16 11 N -0.69 -31.64 5.07 -478.51 -2.43 -34.06 16 12 C 0.70 31.67 8.19 179.05 1.47 33.13 16 13 O -0.63 -32.99 17.16 -4.00 -0.07 -33.06 16 14 N -0.52 -18.26 4.38 -184.74 -0.81 -19.07 16 15 N -0.54 -16.44 5.49 -51.05 -0.28 -16.72 16 16 C 0.12 3.52 6.17 38.19 0.24 3.76 16 17 C 0.04 1.11 7.24 22.47 0.16 1.27 16 18 F -0.14 -4.71 14.93 44.97 0.67 -4.04 16 19 C -0.12 -2.39 10.02 22.30 0.22 -2.16 16 20 C -0.10 -1.42 10.04 22.29 0.22 -1.20 16 21 C -0.11 -2.03 10.02 22.30 0.22 -1.81 16 22 C 0.05 1.27 7.31 22.47 0.16 1.43 16 23 F -0.14 -3.95 16.72 44.97 0.75 -3.19 16 24 C -0.19 -8.40 9.96 30.62 0.30 -8.09 16 25 C -0.19 -7.65 9.92 30.62 0.30 -7.35 16 26 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 27 H 0.01 0.68 8.04 -2.39 -0.02 0.66 16 28 H 0.08 4.39 5.96 -2.39 -0.01 4.38 16 29 H 0.40 18.17 6.58 -92.71 -0.61 17.56 16 30 H 0.43 13.41 8.93 -213.32 -1.90 11.50 16 31 H 0.43 12.27 8.44 -213.32 -1.80 10.47 16 32 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 33 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 36 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 38 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -64.73 334.75 1.17 -63.56 By element: Atomic # 1 Polarization: 47.83 SS G_CDS: -3.17 Total: 44.66 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.26 Total: 6.36 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.30 Total: -117.70 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.07 Total: -33.06 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 1.42 Total: -7.24 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -64.73 1.17 -63.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562641.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.247 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds