Wall clock time and date at job start Fri Apr 10 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36003 * 117.00124 * 2 1 4 4 C 1.38560 * 120.06312 * 359.97438 * 3 2 1 5 5 C 1.38336 * 119.98583 * 180.02562 * 4 3 2 6 6 Cl 1.73601 * 119.94287 * 179.97438 * 5 4 3 7 7 C 1.38362 * 120.11711 * 359.72559 * 5 4 3 8 8 C 1.38233 * 120.13483 * 0.54868 * 7 5 4 9 9 C 1.50698 * 119.99465 * 179.72433 * 8 7 5 10 10 N 1.46904 * 109.47217 * 259.72427 * 9 8 7 11 11 C 1.46904 * 110.99787 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46936 * 184.37235 * 11 10 9 13 13 C 1.50702 * 115.54841 * 301.90436 * 12 11 10 14 14 H 1.08006 * 119.99589 * 95.21382 * 13 12 11 15 15 C 1.37870 * 120.00144 * 275.21363 * 13 12 11 16 16 N 1.31514 * 120.00201 * 7.19663 * 15 13 12 17 17 Si 1.86799 * 120.00259 * 187.20142 * 15 13 12 18 18 H 1.48500 * 109.47163 * 269.99741 * 17 15 13 19 19 H 1.48501 * 109.46945 * 29.99804 * 17 15 13 20 20 H 1.48502 * 109.47400 * 149.99795 * 17 15 13 21 21 C 1.53002 * 117.49994 * 87.57206 * 12 11 10 22 22 C 1.52996 * 117.49954 * 156.23249 * 12 11 10 23 23 C 1.38555 * 120.01236 * 359.45238 * 8 7 5 24 24 O 1.36015 * 120.06313 * 180.24934 * 23 8 7 25 25 H 1.09003 * 109.46994 * 300.00349 * 1 2 3 26 26 H 1.09000 * 109.47260 * 59.99563 * 1 2 3 27 27 H 1.08995 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.08006 * 120.01103 * 0.02562 * 4 3 2 29 29 H 1.08008 * 119.93352 * 180.29644 * 7 5 4 30 30 H 1.09005 * 109.47183 * 139.72997 * 9 8 7 31 31 H 1.08995 * 109.47302 * 19.72719 * 9 8 7 32 32 H 1.00901 * 110.99574 * 56.05363 * 10 9 8 33 33 H 1.09002 * 109.47233 * 64.37379 * 11 10 9 34 34 H 1.08998 * 109.47093 * 304.36952 * 11 10 9 35 35 H 0.97002 * 119.99505 * 355.40597 * 16 15 13 36 36 H 1.08998 * 117.50270 * 215.00321 * 21 12 11 37 37 H 1.08997 * 117.49716 * 0.02605 * 21 12 11 38 38 H 1.08993 * 117.50080 * 359.97438 * 22 12 11 39 39 H 1.09002 * 117.49911 * 144.97448 * 22 12 11 40 40 H 0.96706 * 114.00014 * 90.00051 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9228 3.6064 -0.0011 6 17 0.9779 5.0627 -0.0024 7 6 3.3045 3.6798 0.0047 8 6 4.0609 2.5228 -0.0005 9 6 5.5656 2.6064 -0.0005 10 7 6.0679 2.3927 -1.3644 11 6 7.5345 2.4668 -1.4028 12 6 8.0133 2.3487 -2.8512 13 6 7.5962 1.0935 -3.5733 14 1 6.7116 1.0957 -4.1930 15 6 8.3438 -0.0575 -3.4430 16 7 9.3364 -0.1030 -2.5815 17 14 7.9469 -1.5526 -4.4903 18 1 6.9628 -2.4078 -3.7794 19 1 7.3733 -1.1106 -5.7868 20 1 9.1892 -2.3279 -4.7372 21 6 8.1084 3.6370 -3.6711 22 6 9.3834 2.9381 -3.1926 23 6 3.4359 1.2862 0.0000 24 8 4.1792 0.1471 0.0001 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2145 2.3196 -0.0005 29 1 3.7930 4.6430 0.0091 30 1 5.9720 1.8407 0.6604 31 1 5.8748 3.5908 0.3505 32 1 5.6553 3.0505 -2.0088 33 1 7.9551 1.6519 -0.8135 34 1 7.8611 3.4207 -0.9888 35 1 9.5853 0.6929 -2.0860 36 1 7.8692 3.5768 -4.7328 37 1 7.8302 4.5687 -3.1785 38 1 9.9434 3.4102 -2.3855 39 1 9.9832 2.4177 -3.9392 40 1 4.3944 -0.1821 0.8835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797604302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:49 Heat of formation + Delta-G solvation = -57.168990 kcal Electronic energy + Delta-G solvation = -23440.798966 eV Core-core repulsion = 19860.901798 eV Total energy + Delta-G solvation = -3579.897168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58757 -39.37890 -38.84648 -38.13666 -37.03454 -35.85093 -33.82246 -31.96731 -30.64528 -28.46427 -27.64549 -26.71906 -24.84202 -23.60733 -23.02004 -22.24813 -21.21365 -19.58893 -18.72200 -18.44299 -17.94040 -17.03412 -16.73310 -16.40938 -15.85173 -15.75165 -15.60219 -15.38311 -15.05478 -15.01651 -14.41567 -14.24006 -14.05732 -13.72836 -13.55402 -13.03179 -12.87194 -12.70125 -12.64290 -12.60065 -12.37822 -12.19313 -11.99849 -11.92564 -11.71635 -11.53568 -11.29445 -10.41464 -10.32968 -10.19131 -9.80575 -9.19558 -9.06504 -8.40470 -6.08209 -0.08411 0.13830 0.98918 1.55927 1.64278 1.80209 2.17620 2.36342 2.65073 3.18496 3.21971 3.35988 3.51618 3.67575 3.95595 3.98410 4.08365 4.23849 4.26092 4.35337 4.36136 4.43988 4.50051 4.58626 4.60449 4.66051 4.72835 4.84728 4.87055 4.91517 5.02812 5.10571 5.25753 5.39384 5.46793 5.56635 6.19138 6.22639 6.33920 6.43029 6.62767 6.88037 6.88683 7.67606 9.01240 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.004037 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.506892 B = 6934.738428 C = 8243.128758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.103 3.897 4 C -0.184 4.184 5 C -0.009 4.009 6 Cl -0.055 7.055 7 C -0.125 4.125 8 C -0.064 4.064 9 C 0.110 3.890 10 N -0.668 5.668 11 C 0.120 3.880 12 C -0.003 4.003 13 C -0.548 4.548 14 H 0.031 0.969 15 C -0.019 4.019 16 N -0.939 5.939 17 Si 1.105 2.895 18 H -0.285 1.285 19 H -0.278 1.278 20 H -0.284 1.284 21 C -0.176 4.176 22 C -0.182 4.182 23 C 0.090 3.910 24 O -0.489 6.489 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.336 0.664 33 H 0.037 0.963 34 H 0.018 0.982 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 7.648 9.788 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.056 3.944 4 C -0.203 4.203 5 C -0.036 4.036 6 Cl -0.026 7.026 7 C -0.144 4.144 8 C -0.066 4.066 9 C -0.018 4.018 10 N -0.298 5.298 11 C -0.009 4.009 12 C -0.003 4.003 13 C -0.586 4.586 14 H 0.050 0.950 15 C -0.218 4.218 16 N -0.576 5.576 17 Si 0.930 3.070 18 H -0.212 1.212 19 H -0.203 1.203 20 H -0.210 1.210 21 C -0.213 4.213 22 C -0.220 4.220 23 C 0.044 3.956 24 O -0.299 6.299 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.182 0.818 29 H 0.168 0.832 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -18.338 5.359 8.963 21.103 hybrid contribution -0.234 2.478 0.796 2.613 sum -18.571 7.836 9.759 22.395 Atomic orbital electron populations 1.23444 0.76167 1.05887 1.02553 1.86186 1.23662 1.25514 1.88397 1.19338 0.91335 0.85417 0.98271 1.21132 1.01619 0.89463 1.08083 1.20564 0.91608 0.87728 1.03732 1.98371 1.72118 1.35274 1.96818 1.20900 0.91574 0.98851 1.03113 1.19891 0.95977 0.91405 0.99285 1.20689 0.89156 1.00409 0.91581 1.60101 1.06088 1.57647 1.05979 1.21264 0.87183 0.96425 0.95995 1.19233 0.95895 0.92742 0.92468 1.21288 1.11097 0.96346 1.29855 0.95038 1.26707 0.94263 1.03468 0.97356 1.70800 1.30753 1.31681 1.24392 0.83074 0.75712 0.73300 0.74953 1.21171 1.20314 1.21010 1.22896 1.02221 0.96438 0.99770 1.22679 0.91488 1.05081 1.02752 1.17885 0.86605 0.86807 1.04328 1.85031 1.71867 1.39194 1.33854 0.90817 0.91747 0.86254 0.81823 0.83173 0.90900 0.92982 0.84660 0.94482 0.96362 0.92539 0.90748 0.88746 0.89867 0.92281 0.74612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 16 2 O -0.32 -8.16 10.28 -79.71 -0.82 -8.98 16 3 C 0.10 2.72 6.70 22.57 0.15 2.87 16 4 C -0.18 -3.93 8.82 22.37 0.20 -3.74 16 5 C -0.01 -0.21 6.32 22.32 0.14 -0.07 16 6 Cl -0.05 -1.02 28.95 -2.72 -0.08 -1.10 16 7 C -0.12 -2.96 9.44 22.30 0.21 -2.75 16 8 C -0.06 -1.82 5.40 -19.79 -0.11 -1.93 16 9 C 0.11 3.41 5.47 85.56 0.47 3.88 16 10 N -0.67 -26.40 6.28 -517.91 -3.25 -29.65 16 11 C 0.12 5.25 5.50 86.30 0.47 5.73 16 12 C 0.00 -0.13 1.06 -52.93 -0.06 -0.19 16 13 C -0.55 -31.13 8.59 25.60 0.22 -30.91 16 14 H 0.03 1.86 7.82 -2.91 -0.02 1.84 16 15 C -0.02 -1.10 5.39 84.65 0.46 -0.65 16 16 N -0.94 -57.15 13.57 21.44 0.29 -56.86 16 17 Si 1.10 53.38 29.91 68.60 2.05 55.43 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 21 C -0.18 -7.36 9.94 30.62 0.30 -7.06 16 22 C -0.18 -8.33 8.76 30.62 0.27 -8.06 16 23 C 0.09 2.75 6.69 22.56 0.15 2.90 16 24 O -0.49 -16.56 12.52 -79.84 -1.00 -17.56 16 25 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 26 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.16 2.57 6.30 -2.91 -0.02 2.55 16 29 H 0.15 3.03 8.03 -2.91 -0.02 3.01 16 30 H 0.07 2.34 7.85 -2.38 -0.02 2.32 16 31 H 0.05 1.38 8.00 -2.39 -0.02 1.36 16 32 H 0.34 12.87 8.67 -89.69 -0.78 12.09 16 33 H 0.04 1.83 7.75 -2.39 -0.02 1.82 16 34 H 0.02 0.71 8.10 -2.39 -0.02 0.69 16 35 H 0.26 15.94 6.14 -92.71 -0.57 15.37 16 36 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.40 9.66 9.07 -74.05 -0.67 8.99 16 Total: -1.00 -70.28 354.49 1.01 -69.27 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.17 Total: 28.12 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.99 Total: -38.67 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.96 Total: -86.51 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.82 Total: -26.54 kcal Atomic # 14 Polarization: 53.38 SS G_CDS: 2.05 Total: 55.43 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -70.28 1.01 -69.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797604302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.097 kcal (2) G-P(sol) polarization free energy of solvation -70.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds