Wall clock time and date at job start Fri Apr 10 2020 22:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46914 * 2 1 4 4 C 1.52997 * 109.47189 * 239.99650 * 2 1 3 5 5 C 1.50700 * 109.47121 * 59.99935 * 4 2 1 6 6 H 1.07998 * 119.99792 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00040 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46854 * 90.00049 * 9 7 5 11 11 H 1.48490 * 109.47285 * 210.00142 * 9 7 5 12 12 H 1.48500 * 109.46897 * 330.00680 * 9 7 5 13 13 C 1.53004 * 109.46922 * 119.99422 * 2 1 3 14 14 N 1.46494 * 109.47312 * 300.00226 * 13 2 1 15 15 C 1.34779 * 119.99937 * 180.02562 * 14 13 2 16 16 O 1.21588 * 120.00029 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00165 * 179.97438 * 15 14 13 18 18 C 1.40021 * 120.00390 * 185.70880 * 17 15 14 19 19 C 1.39202 * 120.48994 * 24.51775 * 18 17 15 20 20 C 1.38559 * 118.37367 * 180.28692 * 19 18 17 21 21 C 1.38222 * 119.26654 * 359.44293 * 20 19 18 22 22 N 1.31898 * 120.92478 * 0.29386 * 21 20 19 23 23 C 1.31896 * 121.77785 * 359.97438 * 22 21 20 24 24 Cl 1.73599 * 119.67995 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46628 * 300.00186 * 1 2 3 26 26 H 1.08999 * 109.47026 * 60.00154 * 1 2 3 27 27 H 1.08997 * 109.46706 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47024 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46936 * 299.99468 * 3 2 1 30 30 H 1.08997 * 109.47946 * 59.99751 * 3 2 1 31 31 H 1.08995 * 109.47377 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46720 * 300.00183 * 4 2 1 33 33 H 0.97002 * 119.99764 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46738 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.46922 * 60.00413 * 13 2 1 36 36 H 0.97005 * 120.00187 * 359.97438 * 14 13 2 37 37 H 0.97006 * 119.99369 * 5.70517 * 17 15 14 38 38 H 1.08000 * 120.81024 * 0.02715 * 19 18 17 39 39 H 1.07998 * 120.36772 * 179.71302 * 20 19 18 40 40 H 1.08000 * 119.53700 * 180.27620 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2480 0.3982 -5.2572 10 1 2.2254 1.4406 -5.6613 11 1 1.0838 -0.5810 -6.3613 12 1 -0.0606 1.0348 -4.9614 13 6 2.0400 -0.7212 1.2494 14 7 1.5517 -0.0305 2.4454 15 6 1.8777 -0.4906 3.6696 16 8 2.5767 -1.4792 3.7812 17 7 1.4288 0.1451 4.7700 18 6 1.8631 -0.2592 6.0383 19 6 3.0784 -0.9206 6.1911 20 6 3.4626 -1.3062 7.4652 21 6 2.6395 -1.0142 8.5366 22 7 1.4960 -0.3811 8.3600 23 6 1.0899 -0.0010 7.1641 24 17 -0.4256 0.8284 6.9942 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9565 0.8899 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2491 33 1 2.8624 -1.8821 -4.7335 34 1 3.1300 -0.7207 1.2496 35 1 1.6767 -1.7489 1.2494 36 1 0.9943 0.7584 2.3564 37 1 0.8049 0.8828 4.6833 38 1 3.7045 -1.1317 5.3368 39 1 4.3969 -1.8254 7.6202 40 1 2.9368 -1.3088 9.5322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806226113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:33:58 Heat of formation + Delta-G solvation = -10.718976 kcal Electronic energy + Delta-G solvation = -22975.468928 eV Core-core repulsion = 19429.878735 eV Total energy + Delta-G solvation = -3545.590193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17714 -39.72031 -37.46492 -36.97080 -35.25174 -33.90063 -32.42310 -32.06091 -30.07626 -27.17601 -26.59091 -26.28423 -24.30057 -23.66978 -22.72523 -20.98813 -19.11498 -18.51430 -17.62397 -17.32770 -16.55001 -16.35108 -15.62532 -15.25858 -14.78734 -14.73097 -14.48620 -14.22903 -13.86408 -13.46412 -13.16509 -12.83994 -12.75450 -12.36050 -12.11331 -12.06009 -11.65927 -11.41740 -11.17130 -11.06657 -10.90589 -10.70046 -10.51572 -10.48094 -10.31281 -9.99001 -9.95037 -9.68275 -9.28173 -9.01259 -8.99466 -8.43921 -8.40396 -6.04575 -4.06115 0.59128 0.90632 1.49172 2.34188 2.94128 3.27754 3.35189 3.36588 3.44603 3.98126 4.22211 4.41181 4.42045 4.74991 4.76927 5.04290 5.31009 5.35739 5.53287 5.56035 5.65300 5.83031 5.89838 6.07969 6.09802 6.13702 6.30083 6.36149 6.41771 6.55663 6.60967 6.68853 6.97772 7.00190 7.04647 7.39793 7.58014 7.69561 7.76338 7.93684 8.33141 8.37138 8.98531 9.57363 11.06839 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.030815 B = 0.002576 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.416967 B =10865.992215 C =11519.677684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.144 3.856 14 N -0.725 5.725 15 C 0.701 3.299 16 O -0.573 6.573 17 N -0.680 5.680 18 C 0.153 3.847 19 C -0.080 4.080 20 C -0.142 4.142 21 C 0.086 3.914 22 N -0.456 5.456 23 C 0.132 3.868 24 Cl -0.033 7.033 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.410 0.590 38 H 0.170 0.830 39 H 0.146 0.854 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 4.687 22.050 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.021 3.979 14 N -0.379 5.379 15 C 0.401 3.599 16 O -0.450 6.450 17 N -0.328 5.328 18 C 0.051 3.949 19 C -0.108 4.108 20 C -0.163 4.163 21 C -0.073 4.073 22 N -0.167 5.167 23 C -0.035 4.035 24 Cl -0.005 7.005 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.247 0.753 38 H 0.187 0.813 39 H 0.164 0.836 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.404 3.939 22.555 22.939 hybrid contribution -0.557 1.027 -1.717 2.077 sum -1.962 4.966 20.838 21.511 Atomic orbital electron populations 1.21771 0.95184 1.01269 1.00269 1.20936 0.95561 0.95918 0.94883 1.21769 1.00610 0.95819 1.00267 1.19088 0.96402 0.95259 0.89345 1.21162 1.31306 1.12098 0.90477 0.92248 1.25011 0.95295 0.95051 0.99106 1.69962 1.36892 1.22960 1.23512 0.86645 0.79189 0.79416 0.83045 1.20758 1.21314 1.19945 1.21640 0.98940 0.95846 0.81465 1.45445 1.55379 1.32866 1.04239 1.15957 0.80775 0.82697 0.80441 1.90892 1.42128 1.26572 1.85403 1.42722 1.49489 1.37385 1.03169 1.18095 0.93536 0.99287 0.83936 1.22022 0.93625 0.95772 0.99392 1.22225 1.01596 1.00002 0.92454 1.22596 0.89057 0.95719 0.99883 1.66935 1.16407 1.10661 1.22668 1.21265 0.90412 1.02199 0.89667 1.98398 1.28920 1.76136 1.97005 0.95337 0.91309 0.93259 0.93266 0.91330 0.95329 0.96266 0.96256 0.92991 0.91512 0.91527 0.76682 0.75278 0.81294 0.83589 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.07 -1.29 0.54 -154.50 -0.08 -1.37 16 3 C -0.13 -2.08 8.05 37.16 0.30 -1.79 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.18 7.65 -34.44 -0.26 -13.45 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.14 2.34 4.56 -4.04 -0.02 2.33 16 14 N -0.73 -9.53 4.96 -65.22 -0.32 -9.86 16 15 C 0.70 9.71 8.38 -86.91 -0.73 8.98 16 16 O -0.57 -9.73 13.55 5.29 0.07 -9.66 16 17 N -0.68 -7.55 5.21 -14.09 -0.07 -7.63 16 18 C 0.15 1.77 6.45 -83.48 -0.54 1.24 16 19 C -0.08 -0.90 8.82 -39.11 -0.35 -1.24 16 20 C -0.14 -1.21 10.10 -39.47 -0.40 -1.61 16 21 C 0.09 0.75 11.18 -17.53 -0.20 0.55 16 22 N -0.46 -5.14 10.33 -10.21 -0.11 -5.24 16 23 C 0.13 1.51 7.29 -17.25 -0.13 1.38 16 24 Cl -0.03 -0.33 27.94 -51.86 -1.45 -1.78 16 25 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 26 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 30 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 4.32 6.18 -40.82 -0.25 4.07 16 37 H 0.41 3.58 7.78 -40.82 -0.32 3.26 16 38 H 0.17 2.12 5.89 -52.49 -0.31 1.81 16 39 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -30.68 342.49 -8.41 -39.09 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.09 Total: 3.90 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.31 Total: -4.60 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.23 Total: -47.87 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.45 Total: -1.78 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.68 -8.41 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806226113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.370 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds