Wall clock time and date at job start Fri Apr 10 2020 22:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47032 * 2 1 4 4 C 1.52997 * 109.47168 * 240.00033 * 2 1 3 5 5 C 1.50693 * 109.47460 * 60.00006 * 4 2 1 6 6 H 1.08002 * 119.99981 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00551 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99847 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00517 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47045 * 89.99721 * 9 7 5 11 11 H 1.48495 * 109.47476 * 210.00195 * 9 7 5 12 12 H 1.48498 * 109.47031 * 330.00409 * 9 7 5 13 13 C 1.52998 * 109.46993 * 120.00106 * 2 1 3 14 14 N 1.46501 * 109.47200 * 300.00183 * 13 2 1 15 15 C 1.34775 * 120.00304 * 180.02562 * 14 13 2 16 16 O 1.21578 * 119.99798 * 359.72399 * 15 14 13 17 17 N 1.34781 * 120.00158 * 179.72587 * 15 14 13 18 18 C 1.39389 * 119.99827 * 174.90403 * 17 15 14 19 19 C 1.39012 * 119.68508 * 185.10502 * 18 17 15 20 20 C 1.38396 * 119.12735 * 179.75007 * 19 18 17 21 21 C 1.38779 * 118.51178 * 0.51569 * 20 19 18 22 22 C 1.38231 * 119.30354 * 359.72212 * 21 20 19 23 23 Cl 1.73595 * 119.59464 * 180.02562 * 22 21 20 24 24 N 1.32042 * 120.81548 * 0.02717 * 22 21 20 25 25 H 1.08991 * 109.47622 * 299.99803 * 1 2 3 26 26 H 1.08998 * 109.46990 * 60.00555 * 1 2 3 27 27 H 1.09006 * 109.47023 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47231 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47493 * 299.99776 * 3 2 1 30 30 H 1.09005 * 109.47103 * 60.00129 * 3 2 1 31 31 H 1.09003 * 109.47144 * 180.02562 * 4 2 1 32 32 H 1.09009 * 109.47108 * 299.99674 * 4 2 1 33 33 H 0.96993 * 120.00173 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47511 * 180.02562 * 13 2 1 35 35 H 1.09004 * 109.47521 * 59.99704 * 13 2 1 36 36 H 0.97000 * 119.99546 * 359.72595 * 14 13 2 37 37 H 0.97001 * 119.99819 * 354.89803 * 17 15 14 38 38 H 1.07996 * 120.43582 * 359.97438 * 19 18 17 39 39 H 1.08008 * 120.73886 * 180.21396 * 20 19 18 40 40 H 1.07999 * 120.34611 * 179.75274 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2492 0.3993 -5.2572 10 1 2.2276 1.4411 -5.6607 11 1 1.0846 -0.5795 -6.3616 12 1 -0.0590 1.0369 -4.9616 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8775 -0.4909 3.6695 16 8 2.5728 -1.4820 3.7811 17 7 1.4328 0.1477 4.7700 18 6 1.6799 -0.3866 6.0335 19 6 1.1284 0.2186 7.1568 20 6 1.3769 -0.3246 8.4052 21 6 2.1807 -1.4528 8.4886 22 6 2.7007 -2.0001 7.3306 23 17 3.7066 -3.4118 7.4261 24 7 2.4419 -1.4625 6.1527 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 2.8617 -1.8823 -4.7335 34 1 3.1299 -0.7209 1.2495 35 1 1.6766 -1.7490 1.2493 36 1 0.9972 0.7603 2.3564 37 1 0.9408 0.9791 4.6827 38 1 0.5110 1.0991 7.0563 39 1 0.9587 0.1225 9.2950 40 1 2.3973 -1.8988 9.4480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806336249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:02 Heat of formation + Delta-G solvation = 1.722711 kcal Electronic energy + Delta-G solvation = -22847.007659 eV Core-core repulsion = 19301.956979 eV Total energy + Delta-G solvation = -3545.050681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.04108 -39.50836 -37.33551 -36.74249 -34.87474 -33.66014 -32.73263 -32.07866 -30.09920 -27.13052 -26.53452 -26.23646 -24.18786 -23.66838 -22.66013 -20.81903 -18.98202 -18.60218 -17.56071 -16.65369 -16.33917 -16.17245 -15.76848 -15.35326 -14.79773 -14.60486 -14.39891 -14.08950 -13.68963 -13.54532 -13.08775 -12.76928 -12.55083 -12.41690 -12.07074 -11.99580 -11.40147 -11.20495 -11.03325 -10.86594 -10.80146 -10.64430 -10.44819 -10.40608 -10.26607 -10.00362 -9.89016 -9.39365 -9.18979 -8.93933 -8.81710 -8.44441 -8.36225 -6.00172 -4.01701 0.65403 0.94653 1.61776 2.41166 3.12159 3.30418 3.37584 3.38991 3.63034 3.98135 4.31209 4.44960 4.54510 4.70239 4.80767 4.92658 5.35228 5.39590 5.48708 5.61886 5.72072 5.73072 5.82676 6.14507 6.15444 6.23055 6.38407 6.39155 6.53646 6.60870 6.64885 6.75418 7.04228 7.05967 7.11411 7.52169 7.63967 7.75925 7.98278 8.03576 8.39663 8.65684 9.03101 9.61422 11.11290 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.029612 B = 0.002474 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.334687 B =11312.864396 C =12057.345776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.146 3.854 14 N -0.732 5.732 15 C 0.686 3.314 16 O -0.525 6.525 17 N -0.671 5.671 18 C 0.407 3.593 19 C -0.213 4.213 20 C -0.033 4.033 21 C -0.197 4.197 22 C 0.212 3.788 23 Cl -0.029 7.029 24 N -0.469 5.469 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.394 0.606 37 H 0.414 0.586 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 5.669 25.728 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.023 3.977 14 N -0.388 5.388 15 C 0.385 3.615 16 O -0.396 6.396 17 N -0.320 5.320 18 C 0.174 3.826 19 C -0.237 4.237 20 C -0.059 4.059 21 C -0.220 4.220 22 C 0.046 3.954 23 Cl 0.000 7.000 24 N -0.186 5.186 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.251 0.749 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.411 4.104 24.763 25.331 hybrid contribution -1.027 1.448 -0.398 1.819 sum -4.438 5.552 24.365 25.380 Atomic orbital electron populations 1.21756 0.95262 1.01205 1.00136 1.20917 0.95484 0.95867 0.94972 1.21759 1.00600 0.95874 1.00134 1.19092 0.96427 0.95272 0.89371 1.21166 1.31238 1.12055 0.90501 0.92273 1.25017 0.95333 0.95072 0.99091 1.69965 1.36914 1.22971 1.23467 0.86647 0.79148 0.79412 0.83088 1.20781 1.21336 1.19969 1.21564 0.98839 0.95747 0.81512 1.45435 1.56019 1.33053 1.04278 1.16130 0.81326 0.83720 0.80351 1.91080 1.38768 1.25161 1.84568 1.42876 1.58701 1.27307 1.03118 1.17907 0.90723 0.89252 0.84766 1.21501 1.06195 1.04165 0.91869 1.21299 0.93922 0.93298 0.97409 1.21704 1.02509 0.99224 0.98587 1.21449 0.93817 0.90913 0.89249 1.98418 1.66678 1.37096 1.97830 1.66868 1.15269 1.10525 1.25903 0.95355 0.91428 0.93322 0.93315 0.91421 0.95371 0.96271 0.96262 0.93012 0.91762 0.91734 0.77137 0.74924 0.83929 0.83472 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.15 8.05 37.15 0.30 -1.85 16 4 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.46 7.65 -34.45 -0.26 -13.72 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.15 2.58 4.56 -4.04 -0.02 2.56 16 14 N -0.73 -10.36 4.96 -65.23 -0.32 -10.68 16 15 C 0.69 10.62 8.52 -86.92 -0.74 9.88 16 16 O -0.53 -10.67 14.60 5.30 0.08 -10.59 16 17 N -0.67 -7.48 5.39 -15.82 -0.09 -7.57 16 18 C 0.41 4.85 7.42 -154.71 -1.15 3.71 16 19 C -0.21 -1.63 9.94 -39.24 -0.39 -2.02 16 20 C -0.03 -0.22 10.16 -39.32 -0.40 -0.62 16 21 C -0.20 -1.67 9.87 -39.38 -0.39 -2.06 16 22 C 0.21 2.62 7.27 -17.46 -0.13 2.50 16 23 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.86 16 24 N -0.47 -7.07 7.87 -9.49 -0.07 -7.14 16 25 H 0.03 0.38 6.87 -51.93 -0.36 0.03 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 30 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.39 4.43 6.18 -40.82 -0.25 4.18 16 37 H 0.41 2.77 8.72 -40.82 -0.36 2.41 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -34.26 346.48 -9.40 -43.66 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.25 Total: 1.23 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.17 Total: -2.68 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.25 Total: -51.06 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.26 -9.40 -43.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806336249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.380 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds