Wall clock time and date at job start Fri Apr 10 2020 22:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47032 * 2 1 4 4 C 1.52997 * 109.47168 * 240.00033 * 2 1 3 5 5 C 1.50693 * 109.47460 * 60.00006 * 4 2 1 6 6 H 1.08002 * 119.99981 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00551 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99847 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00517 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47045 * 89.99721 * 9 7 5 11 11 H 1.48495 * 109.47476 * 210.00195 * 9 7 5 12 12 H 1.48498 * 109.47031 * 330.00409 * 9 7 5 13 13 C 1.52998 * 109.46993 * 120.00106 * 2 1 3 14 14 N 1.46501 * 109.47200 * 300.00183 * 13 2 1 15 15 C 1.34775 * 120.00304 * 180.02562 * 14 13 2 16 16 O 1.21578 * 119.99798 * 359.72399 * 15 14 13 17 17 N 1.34781 * 120.00158 * 179.72587 * 15 14 13 18 18 C 1.39389 * 119.99827 * 174.90403 * 17 15 14 19 19 C 1.39012 * 119.68508 * 185.10502 * 18 17 15 20 20 C 1.38396 * 119.12735 * 179.75007 * 19 18 17 21 21 C 1.38779 * 118.51178 * 0.51569 * 20 19 18 22 22 C 1.38231 * 119.30354 * 359.72212 * 21 20 19 23 23 Cl 1.73595 * 119.59464 * 180.02562 * 22 21 20 24 24 N 1.32042 * 120.81548 * 0.02717 * 22 21 20 25 25 H 1.08991 * 109.47622 * 299.99803 * 1 2 3 26 26 H 1.08998 * 109.46990 * 60.00555 * 1 2 3 27 27 H 1.09006 * 109.47023 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47231 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47493 * 299.99776 * 3 2 1 30 30 H 1.09005 * 109.47103 * 60.00129 * 3 2 1 31 31 H 1.09003 * 109.47144 * 180.02562 * 4 2 1 32 32 H 1.09009 * 109.47108 * 299.99674 * 4 2 1 33 33 H 0.96993 * 120.00173 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47511 * 180.02562 * 13 2 1 35 35 H 1.09004 * 109.47521 * 59.99704 * 13 2 1 36 36 H 0.97000 * 119.99546 * 359.72595 * 14 13 2 37 37 H 0.97001 * 119.99819 * 354.89803 * 17 15 14 38 38 H 1.07996 * 120.43582 * 359.97438 * 19 18 17 39 39 H 1.08008 * 120.73886 * 180.21396 * 20 19 18 40 40 H 1.07999 * 120.34611 * 179.75274 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2492 0.3993 -5.2572 10 1 2.2276 1.4411 -5.6607 11 1 1.0846 -0.5795 -6.3616 12 1 -0.0590 1.0369 -4.9616 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8775 -0.4909 3.6695 16 8 2.5728 -1.4820 3.7811 17 7 1.4328 0.1477 4.7700 18 6 1.6799 -0.3866 6.0335 19 6 1.1284 0.2186 7.1568 20 6 1.3769 -0.3246 8.4052 21 6 2.1807 -1.4528 8.4886 22 6 2.7007 -2.0001 7.3306 23 17 3.7066 -3.4118 7.4261 24 7 2.4419 -1.4625 6.1527 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 2.8617 -1.8823 -4.7335 34 1 3.1299 -0.7209 1.2495 35 1 1.6766 -1.7490 1.2493 36 1 0.9972 0.7603 2.3564 37 1 0.9408 0.9791 4.6827 38 1 0.5110 1.0991 7.0563 39 1 0.9587 0.1225 9.2950 40 1 2.3973 -1.8988 9.4480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806336249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:01 Heat of formation + Delta-G solvation = -21.367085 kcal Electronic energy + Delta-G solvation = -22848.008908 eV Core-core repulsion = 19301.956979 eV Total energy + Delta-G solvation = -3546.051929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.95245 -40.57255 -38.77617 -37.61857 -35.89611 -35.25837 -33.95382 -33.41079 -30.93769 -29.06252 -27.94446 -27.61369 -25.30575 -24.68941 -24.04268 -21.96162 -20.25649 -19.60793 -18.81168 -18.34544 -17.42651 -16.91192 -16.87608 -16.58673 -16.28838 -15.71795 -15.67030 -15.38926 -15.05958 -14.67569 -14.36709 -14.10275 -13.92833 -13.87259 -13.10939 -13.06516 -12.84859 -12.71468 -12.57303 -12.32468 -12.28121 -12.22140 -11.97299 -11.65307 -11.62388 -11.52024 -11.00937 -10.86193 -10.79674 -10.50912 -10.26444 -10.10744 -9.26601 -8.13314 -6.21402 -0.06198 0.29236 0.84097 1.40499 1.43589 1.43801 1.54046 2.05958 2.44666 2.79186 3.01138 3.21241 3.63947 3.89697 3.96951 4.08147 4.09421 4.22207 4.23587 4.40216 4.69105 4.73372 4.75803 4.89102 4.98021 5.10792 5.13675 5.14054 5.20690 5.38340 5.47012 5.51726 5.54829 5.58237 5.67498 5.73731 5.81552 5.90809 6.30847 6.63547 6.94119 7.12780 7.46492 7.54349 8.99423 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.029612 B = 0.002474 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.334687 B =11312.864396 C =12057.345776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.121 4.121 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.258 1.258 13 C 0.162 3.838 14 N -0.716 5.716 15 C 0.686 3.314 16 O -0.582 6.582 17 N -0.654 5.654 18 C 0.371 3.629 19 C -0.187 4.187 20 C -0.024 4.024 21 C -0.183 4.183 22 C 0.176 3.824 23 Cl -0.051 7.051 24 N -0.526 5.526 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.073 0.927 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.259 0.741 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.412 0.588 37 H 0.437 0.563 38 H 0.187 0.813 39 H 0.198 0.802 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 9.260 28.248 30.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.181 1.181 13 C 0.038 3.962 14 N -0.373 5.373 15 C 0.385 3.615 16 O -0.456 6.456 17 N -0.305 5.305 18 C 0.138 3.862 19 C -0.211 4.211 20 C -0.049 4.049 21 C -0.205 4.205 22 C 0.011 3.989 23 Cl -0.023 7.023 24 N -0.244 5.244 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.251 0.749 37 H 0.278 0.722 38 H 0.204 0.796 39 H 0.215 0.785 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.160 7.766 27.338 29.079 hybrid contribution -0.198 0.338 -1.030 1.102 sum -6.358 8.104 26.308 28.253 Atomic orbital electron populations 1.21689 0.93375 1.00919 1.01799 1.20698 0.96839 0.96370 0.92376 1.21694 0.99837 0.94449 1.01838 1.18983 0.94252 0.94218 0.92463 1.21590 1.30368 1.12050 0.90941 0.90682 1.25981 0.95711 0.95866 1.02840 1.70134 1.38894 1.25054 1.24079 0.85521 0.79236 0.78061 0.78682 1.20157 1.21723 1.18140 1.21074 0.97441 0.94956 0.82766 1.45008 1.56049 1.33278 1.03010 1.16291 0.80725 0.83202 0.81246 1.91054 1.41258 1.27803 1.85505 1.42511 1.58403 1.27725 1.01897 1.18378 0.92203 0.89785 0.85819 1.21985 1.04328 1.04266 0.90478 1.21934 0.92329 0.91930 0.98733 1.22104 1.01068 0.99205 0.98135 1.21721 0.95607 0.91488 0.90054 1.98396 1.67561 1.38484 1.97832 1.66570 1.17233 1.12575 1.27989 0.90864 0.92454 0.94670 0.94630 0.92411 0.90843 0.99714 0.99722 0.93216 0.93980 0.94012 0.74934 0.72232 0.79580 0.78538 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 2 C -0.06 -2.32 0.54 -52.19 -0.03 -2.35 16 3 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 4 C 0.04 1.97 4.04 29.84 0.12 2.09 16 5 C -0.51 -27.32 7.65 25.60 0.20 -27.12 16 6 H 0.08 3.71 5.68 -2.91 -0.02 3.69 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16 9 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 C 0.16 5.91 4.56 86.38 0.39 6.31 16 14 N -0.72 -19.43 4.96 -478.54 -2.37 -21.80 16 15 C 0.69 21.04 8.52 179.05 1.53 22.57 16 16 O -0.58 -24.71 14.60 -3.96 -0.06 -24.77 16 17 N -0.65 -13.23 5.39 -322.21 -1.74 -14.97 16 18 C 0.37 8.15 7.42 132.91 0.99 9.14 16 19 C -0.19 -2.00 9.94 22.49 0.22 -1.78 16 20 C -0.02 -0.19 10.16 22.44 0.23 0.04 16 21 C -0.18 -2.60 9.87 22.40 0.22 -2.38 16 22 C 0.18 4.33 7.27 84.66 0.62 4.94 16 23 Cl -0.05 -1.30 29.10 -2.72 -0.08 -1.38 16 24 N -0.53 -16.00 7.87 -183.92 -1.45 -17.45 16 25 H 0.07 1.72 6.87 -2.39 -0.02 1.70 16 26 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 27 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 30 H 0.07 1.71 6.86 -2.38 -0.02 1.69 16 31 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.41 7.85 6.18 -92.71 -0.57 7.28 16 37 H 0.44 4.18 8.72 -92.71 -0.81 3.37 16 38 H 0.19 0.31 8.06 -2.91 -0.02 0.28 16 39 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 40 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -82.73 346.48 2.42 -80.31 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -0.30 Total: 7.17 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.10 Total: 4.81 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -5.27 Total: -111.72 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.06 Total: -24.77 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -82.73 2.42 -80.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806336249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.945 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds