Wall clock time and date at job start Fri Apr 10 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47102 * 2 1 4 4 C 1.53002 * 109.46859 * 240.00185 * 2 1 3 5 5 C 1.50697 * 109.47277 * 59.99811 * 4 2 1 6 6 H 1.07996 * 119.99692 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99838 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99707 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46940 * 60.00236 * 9 7 5 11 11 H 1.48496 * 109.47001 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47129 * 300.00179 * 9 7 5 13 13 C 1.52995 * 109.47083 * 119.99958 * 2 1 3 14 14 N 1.46494 * 109.47389 * 300.00085 * 13 2 1 15 15 C 1.34774 * 120.00280 * 180.02562 * 14 13 2 16 16 O 1.21579 * 119.99784 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00395 * 179.97438 * 15 14 13 18 18 C 1.39542 * 120.00537 * 185.30031 * 17 15 14 19 19 C 1.39456 * 120.85555 * 212.52373 * 18 17 15 20 20 C 1.37887 * 119.10960 * 180.02562 * 19 18 17 21 21 N 1.32012 * 120.84983 * 0.02562 * 20 19 18 22 22 C 1.32051 * 121.87775 * 359.67971 * 21 20 19 23 23 Cl 1.73593 * 119.59844 * 180.31195 * 22 21 20 24 24 C 1.38135 * 120.80255 * 0.59064 * 22 21 20 25 25 H 1.08997 * 109.46970 * 299.99791 * 1 2 3 26 26 H 1.09004 * 109.47241 * 59.99742 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47166 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47283 * 300.00232 * 3 2 1 30 30 H 1.09002 * 109.47260 * 59.99840 * 3 2 1 31 31 H 1.08995 * 109.47007 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46959 * 299.99909 * 4 2 1 33 33 H 0.96999 * 119.99647 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47413 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47112 * 59.99860 * 13 2 1 36 36 H 0.97005 * 120.00022 * 359.97438 * 14 13 2 37 37 H 0.96998 * 119.99730 * 5.30382 * 17 15 14 38 38 H 1.08004 * 120.44299 * 359.97438 * 19 18 17 39 39 H 1.07997 * 119.57589 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.46557 * 179.72868 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3805 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8526 9 14 1.2489 0.3994 -5.2572 10 1 1.7441 1.7994 -5.2567 11 1 1.7448 -0.3000 -6.4697 12 1 -0.2361 0.3995 -5.2577 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5767 -1.4793 3.7810 17 7 1.4289 0.1447 4.7699 18 6 1.8551 -0.2638 6.0343 19 6 1.0121 -0.1624 7.1406 20 6 1.4705 -0.5763 8.3734 21 7 2.6897 -1.0627 8.5139 22 6 3.5159 -1.1801 7.4905 23 17 5.1038 -1.8354 7.7413 24 6 3.1341 -0.7826 6.2239 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7216 -1.2491 32 1 1.6766 -1.7489 -1.2493 33 1 2.8615 -1.8823 -4.7336 34 1 3.1300 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 0.8095 0.8862 4.6830 38 1 0.0139 0.2356 7.0333 39 1 0.8242 -0.5009 9.2353 40 1 3.8157 -0.8771 5.3916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806379349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:03 Heat of formation + Delta-G solvation = -33.604645 kcal Electronic energy + Delta-G solvation = -22801.515675 eV Core-core repulsion = 19254.933085 eV Total energy + Delta-G solvation = -3546.582590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.07091 -40.69231 -38.88068 -37.70493 -36.37172 -35.36148 -34.03749 -32.07956 -31.81861 -29.07635 -27.94227 -27.65659 -25.32636 -24.71875 -24.05519 -22.14781 -20.34068 -19.64988 -18.91957 -18.34201 -17.57195 -17.05769 -16.74970 -16.52629 -16.42826 -15.74741 -15.57419 -15.45047 -15.22550 -14.79578 -14.70567 -14.34100 -13.92191 -13.87499 -13.28974 -12.88037 -12.81593 -12.75092 -12.58461 -12.37496 -12.31004 -12.22164 -12.07683 -11.99843 -11.67068 -11.52594 -11.00636 -10.86882 -10.70149 -10.49762 -10.27312 -10.04502 -9.68107 -8.13188 -6.20878 -0.12057 0.05161 0.75820 1.38158 1.43844 1.45094 1.52398 1.91916 2.44812 2.65568 3.03010 3.21591 3.54841 3.84927 3.87389 3.96389 4.09374 4.11868 4.23053 4.40749 4.64939 4.68177 4.73296 4.77600 4.91804 4.97876 5.09368 5.14571 5.15704 5.35174 5.45671 5.52913 5.55168 5.57704 5.58196 5.79272 5.81962 5.91360 6.31460 6.71639 6.85417 6.94817 7.33110 7.47024 8.99128 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.002411 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.867316 B =11608.901418 C =12253.514567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.159 3.841 14 N -0.711 5.711 15 C 0.698 3.302 16 O -0.613 6.613 17 N -0.663 5.663 18 C 0.219 3.781 19 C -0.182 4.182 20 C 0.138 3.862 21 N -0.517 5.517 22 C 0.177 3.823 23 Cl -0.039 7.039 24 C -0.180 4.180 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.073 0.927 31 H -0.014 1.014 32 H -0.014 1.014 33 H 0.259 0.741 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.415 0.585 37 H 0.434 0.566 38 H 0.189 0.811 39 H 0.209 0.791 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 8.663 23.667 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.063 4.063 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.034 3.966 14 N -0.367 5.367 15 C 0.398 3.602 16 O -0.492 6.492 17 N -0.313 5.313 18 C 0.113 3.887 19 C -0.204 4.204 20 C -0.019 4.019 21 N -0.231 5.231 22 C 0.014 3.986 23 Cl -0.011 7.011 24 C -0.204 4.204 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.004 0.996 32 H 0.005 0.995 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.253 0.747 37 H 0.274 0.726 38 H 0.207 0.793 39 H 0.226 0.774 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.897 7.385 24.340 26.110 hybrid contribution -0.143 0.490 -2.287 2.343 sum -6.040 7.874 22.053 24.183 Atomic orbital electron populations 1.21706 0.93382 1.01037 1.01809 1.20704 0.96839 0.96295 0.92510 1.21706 0.99913 0.94557 1.01773 1.18977 0.94322 0.94256 0.92337 1.21566 1.30422 1.12096 0.91019 0.90806 1.25943 0.95695 0.95859 1.02729 1.70112 1.38781 1.25001 1.24127 0.85619 0.78991 0.78761 0.78391 1.19148 1.21915 1.19079 1.21153 0.97802 0.95141 0.82465 1.44999 1.55558 1.33072 1.03022 1.16106 0.80307 0.82505 0.81255 1.90970 1.43540 1.28585 1.86085 1.42285 1.49832 1.37255 1.01896 1.17791 0.91219 0.94292 0.85379 1.22383 1.01911 1.04581 0.91531 1.23217 0.89770 0.90743 0.98171 1.67076 1.05724 1.17148 1.33140 1.21407 0.89480 0.97834 0.89860 1.98397 1.21290 1.84073 1.97312 1.21769 0.97412 1.04280 0.96971 0.90798 0.92615 0.94453 0.94526 0.92610 0.90868 0.99585 0.99541 0.93216 0.93419 0.93396 0.74656 0.72555 0.79339 0.77414 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 8.05 71.98 0.58 -3.11 16 2 C -0.06 -2.19 0.54 -52.18 -0.03 -2.21 16 3 C -0.12 -3.73 8.05 71.98 0.58 -3.15 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -26.61 7.65 25.60 0.20 -26.42 16 6 H 0.07 3.54 5.68 -2.91 -0.02 3.53 16 7 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 8 N -0.94 -56.41 13.29 21.45 0.28 -56.12 16 9 Si 0.96 42.66 29.54 68.60 2.03 44.68 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 13 C 0.16 5.18 4.56 86.38 0.39 5.58 16 14 N -0.71 -16.47 4.96 -478.56 -2.37 -18.85 16 15 C 0.70 17.77 8.33 179.06 1.49 19.26 16 16 O -0.61 -21.84 14.04 -3.96 -0.06 -21.89 16 17 N -0.66 -10.67 5.36 -316.71 -1.70 -12.37 16 18 C 0.22 4.05 6.33 38.47 0.24 4.29 16 19 C -0.18 -2.00 10.06 22.48 0.23 -1.78 16 20 C 0.14 1.77 11.17 84.58 0.94 2.71 16 21 N -0.52 -11.06 10.34 -186.97 -1.93 -12.99 16 22 C 0.18 4.35 7.27 84.64 0.62 4.97 16 23 Cl -0.04 -0.96 29.10 -2.72 -0.08 -1.04 16 24 C -0.18 -4.50 8.50 22.50 0.19 -4.30 16 25 H 0.07 1.55 6.86 -2.39 -0.02 1.53 16 26 H 0.05 1.84 6.62 -2.38 -0.02 1.83 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.86 6.62 -2.38 -0.02 1.84 16 30 H 0.07 1.56 6.86 -2.39 -0.02 1.55 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 6.54 6.18 -92.70 -0.57 5.97 16 37 H 0.43 2.98 8.84 -92.71 -0.82 2.16 16 38 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.13 4.00 6.47 -2.91 -0.02 3.98 16 Total: -1.00 -74.20 345.35 1.88 -72.32 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -0.31 Total: 8.23 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 6.02 Total: -1.98 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -5.72 Total: -100.32 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -74.20 1.88 -72.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806379349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.712 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds