Wall clock time and date at job start Fri Apr 10 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 O 1.42903 * 109.47184 * 59.99808 * 9 7 2 12 12 C 1.53000 * 109.47083 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.47123 * 179.97438 * 12 9 7 14 14 C 1.46957 * 110.99793 * 293.80372 * 13 12 9 15 15 C 1.53054 * 109.36072 * 176.81057 * 14 13 12 16 16 N 1.46954 * 109.36527 * 58.40032 * 15 14 13 17 17 C 1.39062 * 111.00069 * 176.80642 * 16 15 14 18 18 C 1.39123 * 119.69820 * 303.53324 * 17 16 15 19 19 C 1.38296 * 119.11304 * 179.73022 * 18 17 16 20 20 C 1.38969 * 118.49628 * 0.52401 * 19 18 17 21 21 Cl 1.73594 * 120.35185 * 179.75108 * 20 19 18 22 22 C 1.38127 * 119.30167 * 359.73700 * 20 19 18 23 23 N 1.31980 * 120.84158 * 359.97438 * 22 20 19 24 24 C 1.46957 * 110.88032 * 300.68005 * 16 15 14 25 25 C 1.46954 * 111.00068 * 170.00229 * 13 12 9 26 26 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00234 * 59.99791 * 11 9 7 28 28 H 1.08992 * 109.47399 * 299.99938 * 12 9 7 29 29 H 1.09004 * 109.46724 * 60.00424 * 12 9 7 30 30 H 1.09000 * 109.49243 * 296.77770 * 14 13 12 31 31 H 1.08999 * 109.48907 * 56.84411 * 14 13 12 32 32 H 1.09000 * 109.48736 * 298.42815 * 15 14 13 33 33 H 1.09002 * 109.48845 * 178.36778 * 15 14 13 34 34 H 1.08003 * 120.44115 * 359.97438 * 18 17 16 35 35 H 1.07995 * 120.75540 * 180.26443 * 19 18 17 36 36 H 1.08004 * 119.58061 * 180.02562 * 22 20 19 37 37 H 1.08998 * 109.48575 * 299.35134 * 24 16 15 38 38 H 1.09002 * 109.50384 * 179.29720 * 24 16 15 39 39 H 1.09002 * 109.48899 * 303.15768 * 25 13 12 40 40 H 1.09006 * 109.48673 * 63.22326 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5108 -4.9343 0.0012 14 6 0.7684 -5.1131 1.2567 15 6 -0.0442 -6.4082 1.1857 16 7 0.8625 -7.5399 0.9475 17 6 0.1672 -8.7442 0.9482 18 6 -0.5949 -9.0995 2.0565 19 6 -1.2859 -10.2973 2.0420 20 6 -1.1825 -11.1089 0.9186 21 17 -2.0243 -12.6256 0.8516 22 6 -0.4030 -10.6958 -0.1443 23 7 0.2406 -9.5443 -0.1040 24 6 1.6050 -7.3610 -0.3080 25 6 2.4175 -6.0660 -0.2370 26 1 -0.4850 0.8400 -0.0004 27 1 0.9223 -2.5299 -1.9976 28 1 2.8720 -3.6044 -0.8894 29 1 2.8719 -3.6043 0.8906 30 1 1.4698 -5.1691 2.0892 31 1 0.0949 -4.2689 1.4044 32 1 -0.7644 -6.3413 0.3703 33 1 -0.5730 -6.5578 2.1270 34 1 -0.6493 -8.4467 2.9152 35 1 -1.8890 -10.5973 2.8862 36 1 -0.3197 -11.3228 -1.0197 37 1 0.9035 -7.3050 -1.1404 38 1 2.2784 -8.2052 -0.4561 39 1 2.9464 -5.9164 -1.1783 40 1 3.1377 -6.1328 0.5785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809573320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:08 Heat of formation + Delta-G solvation = 4.085706 kcal Electronic energy + Delta-G solvation = -23263.828658 eV Core-core repulsion = 19718.880444 eV Total energy + Delta-G solvation = -3544.948213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95578 -38.83574 -36.95974 -36.14921 -34.39082 -32.86456 -32.08652 -30.85855 -30.54321 -28.47210 -26.25470 -24.64571 -23.87164 -22.88307 -22.38514 -20.41924 -19.63645 -17.97700 -17.09312 -16.85058 -16.57633 -15.40435 -14.97762 -14.86893 -14.66963 -14.50201 -14.37744 -14.14084 -13.93739 -13.66339 -13.41850 -13.02433 -12.84809 -12.48573 -12.16582 -11.90034 -11.54190 -11.21641 -11.18563 -11.12272 -10.96743 -10.93695 -10.62595 -10.48779 -10.15170 -10.03167 -9.93318 -9.74313 -9.00009 -8.58332 -8.23548 -8.11189 -7.70579 -6.02171 -4.20351 0.69407 0.89793 1.79457 3.19901 3.25428 3.33961 3.36943 3.56073 4.14815 4.26184 4.44323 4.45800 4.66684 4.69978 4.97396 5.18374 5.25431 5.26935 5.34617 5.44147 5.49568 5.54168 5.58408 5.68457 5.89402 5.98243 6.05385 6.06889 6.12332 6.25906 6.28700 6.52615 6.60075 6.78420 6.95900 7.45883 7.54816 7.65829 7.75584 7.85185 8.18586 8.83716 9.45069 9.61164 11.01944 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.040777 B = 0.002420 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.492761 B =11568.128406 C =11792.408558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.032 3.968 13 N -0.529 5.529 14 C 0.057 3.943 15 C 0.064 3.936 16 N -0.477 5.477 17 C 0.326 3.674 18 C -0.177 4.177 19 C -0.043 4.043 20 C -0.126 4.126 21 Cl -0.064 7.064 22 C 0.145 3.855 23 N -0.506 5.506 24 C 0.072 3.928 25 C 0.051 3.949 26 H 0.260 0.740 27 H 0.343 0.657 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 -21.769 3.172 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.072 0.928 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.253 5.253 14 C -0.071 4.071 15 C -0.061 4.061 16 N -0.194 5.194 17 C 0.094 3.906 18 C -0.200 4.200 19 C -0.069 4.069 20 C -0.157 4.157 21 Cl -0.036 7.036 22 C -0.014 4.014 23 N -0.221 5.221 24 C -0.055 4.055 25 C -0.078 4.078 26 H 0.069 0.931 27 H 0.186 0.814 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.632 -21.471 2.923 21.731 hybrid contribution 0.608 0.541 0.542 0.978 sum -1.023 -20.930 3.465 21.240 Atomic orbital electron populations 1.70087 1.05897 1.26299 1.47126 1.25022 0.94685 0.99087 0.93857 0.86627 0.80205 0.83901 0.77693 1.19756 1.20860 1.20923 1.21686 0.93186 0.91591 1.54749 0.92685 1.19325 0.87784 0.88553 0.86486 0.92849 1.86552 1.37757 1.96297 1.15004 1.23087 0.97276 0.89473 0.99730 1.62208 1.27368 1.02145 1.33603 1.22179 0.97669 0.96217 0.91050 1.22422 0.93650 0.88117 1.01910 1.59320 1.24286 1.00285 1.35527 1.20088 0.89160 0.92191 0.89173 1.21602 1.00300 0.98250 0.99832 1.21355 0.96505 0.92312 0.96753 1.21851 1.03478 0.91486 0.98862 1.98366 1.76834 1.29911 1.98493 1.22539 0.90351 0.91880 0.96646 1.67837 1.23259 1.05446 1.25524 1.22092 0.97194 0.97611 0.88591 1.22244 0.94236 0.90212 1.01094 0.93052 0.81394 0.91688 0.95390 0.94466 0.88462 0.92212 0.89754 0.83626 0.83743 0.81956 0.92041 0.89740 0.90103 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 12.84 55.43 0.71 -24.31 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.57 -15.42 8.76 -34.44 -0.30 -15.72 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 5.81 2.71 -27.88 -0.08 5.73 16 10 H 0.05 1.43 6.49 -51.93 -0.34 1.09 16 11 O -0.55 -14.14 12.60 -35.23 -0.44 -14.59 16 12 C 0.03 0.63 4.56 -3.82 -0.02 0.61 16 13 N -0.53 -9.25 4.58 -234.46 -1.07 -10.33 16 14 C 0.06 0.93 5.41 -3.77 -0.02 0.91 16 15 C 0.06 0.87 5.37 -3.77 -0.02 0.85 16 16 N -0.48 -6.36 4.73 -173.03 -0.82 -7.18 16 17 C 0.33 4.05 6.40 -154.98 -0.99 3.06 16 18 C -0.18 -1.79 9.21 -39.23 -0.36 -2.15 16 19 C -0.04 -0.38 9.97 -39.29 -0.39 -0.77 16 20 C -0.13 -1.19 6.34 -39.35 -0.25 -1.44 16 21 Cl -0.06 -0.54 28.98 -51.86 -1.50 -2.04 16 22 C 0.14 1.48 10.97 -17.53 -0.19 1.29 16 23 N -0.51 -6.31 8.71 -12.40 -0.11 -6.42 16 24 C 0.07 0.98 4.79 -3.77 -0.02 0.97 16 25 C 0.05 0.75 5.61 -3.77 -0.02 0.73 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 27 H 0.34 7.91 9.04 45.56 0.41 8.32 16 28 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 29 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.76 6.34 -51.93 -0.33 1.43 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.94 6.80 -51.93 -0.35 0.59 16 34 H 0.15 1.24 7.19 -52.48 -0.38 0.86 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 38 H 0.08 1.10 7.83 -51.93 -0.41 0.69 16 39 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -30.29 341.34 -10.59 -40.88 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.72 Total: 6.82 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.76 Total: -3.84 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -1.29 Total: -48.25 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.44 Total: -14.59 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.29 -10.59 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.964 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds