Wall clock time and date at job start Fri Apr 10 2020 22:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 O 1.42903 * 109.47184 * 59.99808 * 9 7 2 12 12 C 1.53000 * 109.47083 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.47123 * 179.97438 * 12 9 7 14 14 C 1.46957 * 110.99793 * 293.80372 * 13 12 9 15 15 C 1.53054 * 109.36072 * 176.81057 * 14 13 12 16 16 N 1.46954 * 109.36527 * 58.40032 * 15 14 13 17 17 C 1.39062 * 111.00069 * 176.80642 * 16 15 14 18 18 C 1.39123 * 119.69820 * 303.53324 * 17 16 15 19 19 C 1.38296 * 119.11304 * 179.73022 * 18 17 16 20 20 C 1.38969 * 118.49628 * 0.52401 * 19 18 17 21 21 Cl 1.73594 * 120.35185 * 179.75108 * 20 19 18 22 22 C 1.38127 * 119.30167 * 359.73700 * 20 19 18 23 23 N 1.31980 * 120.84158 * 359.97438 * 22 20 19 24 24 C 1.46957 * 110.88032 * 300.68005 * 16 15 14 25 25 C 1.46954 * 111.00068 * 170.00229 * 13 12 9 26 26 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00234 * 59.99791 * 11 9 7 28 28 H 1.08992 * 109.47399 * 299.99938 * 12 9 7 29 29 H 1.09004 * 109.46724 * 60.00424 * 12 9 7 30 30 H 1.09000 * 109.49243 * 296.77770 * 14 13 12 31 31 H 1.08999 * 109.48907 * 56.84411 * 14 13 12 32 32 H 1.09000 * 109.48736 * 298.42815 * 15 14 13 33 33 H 1.09002 * 109.48845 * 178.36778 * 15 14 13 34 34 H 1.08003 * 120.44115 * 359.97438 * 18 17 16 35 35 H 1.07995 * 120.75540 * 180.26443 * 19 18 17 36 36 H 1.08004 * 119.58061 * 180.02562 * 22 20 19 37 37 H 1.08998 * 109.48575 * 299.35134 * 24 16 15 38 38 H 1.09002 * 109.50384 * 179.29720 * 24 16 15 39 39 H 1.09002 * 109.48899 * 303.15768 * 25 13 12 40 40 H 1.09006 * 109.48673 * 63.22326 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5108 -4.9343 0.0012 14 6 0.7684 -5.1131 1.2567 15 6 -0.0442 -6.4082 1.1857 16 7 0.8625 -7.5399 0.9475 17 6 0.1672 -8.7442 0.9482 18 6 -0.5949 -9.0995 2.0565 19 6 -1.2859 -10.2973 2.0420 20 6 -1.1825 -11.1089 0.9186 21 17 -2.0243 -12.6256 0.8516 22 6 -0.4030 -10.6958 -0.1443 23 7 0.2406 -9.5443 -0.1040 24 6 1.6050 -7.3610 -0.3080 25 6 2.4175 -6.0660 -0.2370 26 1 -0.4850 0.8400 -0.0004 27 1 0.9223 -2.5299 -1.9976 28 1 2.8720 -3.6044 -0.8894 29 1 2.8719 -3.6043 0.8906 30 1 1.4698 -5.1691 2.0892 31 1 0.0949 -4.2689 1.4044 32 1 -0.7644 -6.3413 0.3703 33 1 -0.5730 -6.5578 2.1270 34 1 -0.6493 -8.4467 2.9152 35 1 -1.8890 -10.5973 2.8862 36 1 -0.3197 -11.3228 -1.0197 37 1 0.9035 -7.3050 -1.1404 38 1 2.2784 -8.2052 -0.4561 39 1 2.9464 -5.9164 -1.1783 40 1 3.1377 -6.1328 0.5785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809573320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:07 Heat of formation + Delta-G solvation = -17.664118 kcal Electronic energy + Delta-G solvation = -23264.771801 eV Core-core repulsion = 19718.880444 eV Total energy + Delta-G solvation = -3545.891357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85038 -39.98921 -38.03588 -37.42960 -35.86519 -34.19203 -33.66877 -32.02494 -31.65105 -30.00866 -27.77612 -25.73529 -25.36137 -23.94014 -23.37041 -22.09649 -20.88861 -19.16756 -18.70789 -17.79466 -17.42530 -16.65555 -16.61357 -16.29208 -16.21708 -15.82622 -15.54973 -15.43447 -15.13730 -14.99644 -14.54263 -14.26958 -14.15897 -13.54670 -13.20841 -13.10303 -12.98390 -12.87901 -12.78246 -12.52709 -12.33827 -12.20414 -12.16856 -11.93478 -11.82668 -10.98607 -10.91813 -10.82172 -10.67695 -10.57445 -10.07070 -9.17881 -9.10455 -8.11880 -6.37172 -0.11762 0.14822 1.06413 1.40404 1.42243 1.53779 2.29962 2.39402 2.69940 2.98945 3.14810 3.33477 3.74892 3.78074 3.89233 3.96389 4.01728 4.15889 4.24637 4.30934 4.40026 4.48581 4.54321 4.62146 4.65884 4.74435 4.78922 4.85540 4.87940 4.94172 5.04823 5.06018 5.27106 5.52891 5.62585 5.77306 5.93611 6.05911 6.20819 6.24496 6.76295 6.82068 7.36982 7.64409 8.92590 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.040777 B = 0.002420 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.492761 B =11568.128406 C =11792.408558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.586 4.586 8 H 0.058 0.942 9 C 0.237 3.763 10 H 0.024 0.976 11 O -0.570 6.570 12 C 0.050 3.950 13 N -0.541 5.541 14 C 0.060 3.940 15 C 0.075 3.925 16 N -0.480 5.480 17 C 0.302 3.698 18 C -0.175 4.175 19 C -0.039 4.039 20 C -0.124 4.124 21 Cl -0.052 7.052 22 C 0.135 3.865 23 N -0.527 5.527 24 C 0.083 3.917 25 C 0.055 3.945 26 H 0.261 0.739 27 H 0.352 0.648 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.111 0.889 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.045 0.955 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -23.088 3.754 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.624 4.624 8 H 0.077 0.923 9 C 0.179 3.821 10 H 0.042 0.958 11 O -0.373 6.373 12 C -0.078 4.078 13 N -0.266 5.266 14 C -0.069 4.069 15 C -0.050 4.050 16 N -0.197 5.197 17 C 0.070 3.930 18 C -0.198 4.198 19 C -0.065 4.065 20 C -0.154 4.154 21 Cl -0.024 7.024 22 C -0.024 4.024 23 N -0.242 5.242 24 C -0.044 4.044 25 C -0.073 4.073 26 H 0.069 0.931 27 H 0.196 0.804 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.180 0.820 35 H 0.190 0.810 36 H 0.197 0.803 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.122 -22.825 3.504 23.119 hybrid contribution 0.377 0.802 0.354 0.954 sum -0.745 -22.023 3.857 22.370 Atomic orbital electron populations 1.70222 1.07585 1.27211 1.48548 1.25871 0.95465 1.02804 0.93483 0.85529 0.79150 0.79339 0.77643 1.18784 1.20590 1.20554 1.22077 0.93516 0.92809 1.54026 0.92350 1.19192 0.87821 0.89914 0.85150 0.95829 1.86501 1.38672 1.96443 1.15725 1.22675 0.95902 0.89278 0.99906 1.62123 1.27908 1.02042 1.34517 1.22103 0.97370 0.96725 0.90666 1.22282 0.92937 0.87244 1.02571 1.59362 1.24528 1.00559 1.35228 1.20203 0.90602 0.91940 0.90228 1.21801 0.99557 0.98894 0.99545 1.21681 0.95988 0.91521 0.97288 1.21963 1.02826 0.91854 0.98732 1.98376 1.76458 1.29095 1.98464 1.22840 0.90325 0.91580 0.97655 1.67766 1.24079 1.06303 1.26063 1.21930 0.96856 0.97134 0.88514 1.22272 0.93960 0.89476 1.01601 0.93051 0.80390 0.91085 0.95508 0.94030 0.91160 0.94038 0.87130 0.81992 0.81029 0.80311 0.93703 0.88847 0.89242 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.35 12.84 21.45 0.28 -53.08 16 2 C 0.03 1.45 5.40 84.65 0.46 1.91 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.59 -31.74 8.76 25.60 0.22 -31.52 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 9 C 0.24 11.93 2.71 29.85 0.08 12.01 16 10 H 0.02 1.33 6.49 -2.39 -0.02 1.32 16 11 O -0.57 -29.82 12.60 -148.98 -1.88 -31.70 16 12 C 0.05 2.02 4.56 86.30 0.39 2.41 16 13 N -0.54 -19.05 4.58 -895.71 -4.10 -23.15 16 14 C 0.06 1.96 5.41 86.31 0.47 2.43 16 15 C 0.08 2.02 5.37 86.31 0.46 2.49 16 16 N -0.48 -12.36 4.73 -701.34 -3.32 -15.68 16 17 C 0.30 7.12 6.40 133.04 0.85 7.97 16 18 C -0.18 -3.18 9.21 22.50 0.21 -2.97 16 19 C -0.04 -0.58 9.97 22.46 0.22 -0.36 16 20 C -0.12 -2.06 6.34 22.42 0.14 -1.92 16 21 Cl -0.05 -0.76 28.98 -2.72 -0.08 -0.84 16 22 C 0.13 2.56 10.97 84.64 0.93 3.49 16 23 N -0.53 -12.63 8.71 -193.14 -1.68 -14.31 16 24 C 0.08 2.22 4.79 86.31 0.41 2.63 16 25 C 0.06 1.58 5.61 86.31 0.48 2.06 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.35 16.53 9.04 -74.06 -0.67 15.86 16 28 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 29 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 2.67 6.34 -2.39 -0.02 2.66 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 2.33 6.80 -2.39 -0.02 2.32 16 34 H 0.16 2.32 7.19 -2.91 -0.02 2.30 16 35 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.04 1.35 8.05 -2.39 -0.02 1.33 16 38 H 0.09 2.34 7.83 -2.39 -0.02 2.32 16 39 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 40 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -65.10 341.34 -3.03 -68.12 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.39 Total: 25.00 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.34 Total: 0.63 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -8.83 Total: -106.23 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.88 Total: -31.70 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -65.10 -3.03 -68.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.461 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds