Wall clock time and date at job start Fri Apr 10 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99921 * 2 1 4 4 H 1.48495 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46874 * 300.00708 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00410 * 3 2 1 7 7 C 1.37877 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46636 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46639 * 179.97438 * 10 9 7 12 12 N 1.30984 * 126.43925 * 90.28231 * 11 10 9 13 13 C 1.35197 * 105.57728 * 180.09820 * 12 11 10 14 14 C 1.48495 * 126.41020 * 179.90574 * 13 12 11 15 15 C 1.39832 * 120.87032 * 359.70784 * 14 13 12 16 16 C 1.37944 * 119.16053 * 180.02562 * 15 14 13 17 17 N 1.31924 * 120.95761 * 359.97438 * 16 15 14 18 18 C 1.32303 * 121.92231 * 0.02562 * 17 16 15 19 19 N 1.39852 * 119.63394 * 179.97438 * 18 17 16 20 20 C 1.37173 * 126.48628 * 4.71587 * 19 18 17 21 21 C 1.34624 * 106.83086 * 179.83800 * 20 19 18 22 22 N 1.34155 * 108.21224 * 0.42630 * 21 20 19 23 23 C 1.30485 * 109.37011 * 359.72838 * 22 21 20 24 24 C 1.38788 * 120.73535 * 359.97438 * 18 17 16 25 25 N 1.30724 * 107.18472 * 359.64016 * 13 12 11 26 26 O 1.21291 * 110.10137 * 0.22761 * 25 13 12 27 27 H 0.97002 * 120.00317 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47055 * 60.00493 * 9 7 2 29 29 H 1.08997 * 109.46941 * 299.99918 * 9 7 2 30 30 H 1.08999 * 109.46654 * 60.00045 * 10 9 7 31 31 H 1.08987 * 109.47167 * 300.00076 * 10 9 7 32 32 H 1.08003 * 120.42043 * 0.02562 * 15 14 13 33 33 H 1.08005 * 119.52307 * 179.97438 * 16 15 14 34 34 H 1.08003 * 126.58400 * 359.97438 * 20 19 18 35 35 H 1.07998 * 125.89182 * 180.12941 * 21 20 19 36 36 H 1.08005 * 125.71744 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.52069 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9671 -0.0012 12 7 1.1062 -5.6433 -1.0546 13 6 0.4711 -6.7351 -0.5726 14 6 -0.1535 -7.8174 -1.3749 15 6 -0.1323 -7.7780 -2.7725 16 6 -0.7238 -8.8019 -3.4829 17 7 -1.3047 -9.8109 -2.8626 18 6 -1.3482 -9.8890 -1.5425 19 7 -1.9771 -10.9803 -0.9347 20 6 -2.5050 -12.0754 -1.5702 21 6 -3.0058 -12.8781 -0.6125 22 7 -2.8013 -12.2906 0.5761 23 6 -2.1863 -11.1538 0.3970 24 6 -0.7767 -8.9000 -0.7543 25 7 0.5146 -6.6629 0.7319 26 8 1.0964 -5.6552 1.0744 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8727 -3.6046 0.8877 31 1 2.8713 -3.6039 -0.8922 32 1 0.3412 -6.9563 -3.2893 33 1 -0.7112 -8.7772 -4.5626 34 1 -2.5147 -12.2594 -2.6344 35 1 -3.4928 -13.8284 -0.7737 36 1 -1.8931 -10.4659 1.1762 37 1 -0.8147 -8.9670 0.3230 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812810245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:13 Heat of formation + Delta-G solvation = 152.553358 kcal Electronic energy + Delta-G solvation = -23338.193124 eV Core-core repulsion = 19698.575457 eV Total energy + Delta-G solvation = -3639.617667 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.71209 -43.46454 -41.29593 -37.37124 -36.44706 -35.35457 -34.75151 -33.50629 -31.87491 -31.36205 -30.36736 -27.78247 -26.64595 -25.54689 -24.65568 -23.84473 -22.68392 -22.12520 -21.60452 -19.95180 -19.28503 -18.63738 -18.35178 -17.44106 -17.22590 -16.89757 -16.65624 -16.48989 -15.71860 -15.36538 -15.05549 -15.01534 -14.93610 -14.82664 -14.47939 -14.31827 -13.78176 -13.49560 -13.32207 -13.31420 -12.85570 -12.61699 -12.27697 -12.10504 -11.95301 -11.87759 -11.39227 -11.31676 -11.27792 -11.10076 -10.60539 -10.56918 -9.99815 -9.60057 -8.20134 -6.31430 -0.81512 -0.50746 0.15145 0.96255 1.22561 1.33308 1.46177 1.47716 1.59811 1.69973 1.99694 2.13304 2.44407 2.51890 2.72046 3.09332 3.16127 3.32475 3.52896 3.68901 3.72268 3.84749 4.04981 4.22949 4.33558 4.39347 4.45724 4.49851 4.52570 4.58877 4.75678 4.90173 4.94922 5.00138 5.20027 5.45328 5.53839 5.60498 5.78700 5.94039 6.13793 6.47443 6.84771 6.85073 6.90477 7.39043 8.92270 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.002293 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.889227 B =12208.358645 C =12543.878391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.253 1.253 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.032 3.968 10 C -0.016 4.016 11 C 0.221 3.779 12 N -0.492 5.492 13 C 0.194 3.806 14 C 0.045 3.955 15 C -0.135 4.135 16 C 0.150 3.850 17 N -0.496 5.496 18 C 0.339 3.661 19 N -0.415 5.415 20 C -0.030 4.030 21 C -0.040 4.040 22 N -0.507 5.507 23 C 0.187 3.813 24 C -0.150 4.150 25 N -0.385 5.385 26 O 0.076 5.924 27 H 0.263 0.737 28 H -0.004 1.004 29 H -0.002 1.002 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.167 0.833 33 H 0.218 0.782 34 H 0.200 0.800 35 H 0.200 0.800 36 H 0.230 0.770 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -20.265 -6.075 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.177 1.177 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.098 0.902 9 C -0.006 4.006 10 C -0.054 4.054 11 C 0.002 3.998 12 N -0.225 5.225 13 C -0.076 4.076 14 C 0.035 3.965 15 C -0.157 4.157 16 C -0.008 4.008 17 N -0.209 5.209 18 C 0.112 3.888 19 N -0.098 5.098 20 C -0.159 4.159 21 C -0.184 4.184 22 N -0.225 5.225 23 C -0.094 4.094 24 C -0.174 4.174 25 N -0.094 5.094 26 O 0.017 5.983 27 H 0.072 0.928 28 H 0.015 0.985 29 H 0.017 0.983 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.184 0.816 33 H 0.235 0.765 34 H 0.217 0.783 35 H 0.217 0.783 36 H 0.246 0.754 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.933 -21.817 -5.726 22.575 hybrid contribution 0.566 2.191 0.044 2.264 sum -0.367 -19.626 -5.682 20.435 Atomic orbital electron populations 1.70113 1.08030 1.27826 1.51571 1.25976 0.95639 1.03537 0.94710 0.85360 0.79497 0.78629 0.77325 1.17684 1.21006 1.20959 1.21599 0.94231 0.90903 1.50534 0.90213 1.18973 0.94019 0.91844 0.95806 1.20614 0.96725 0.81249 1.06850 1.29555 0.93852 0.97011 0.79371 1.72012 1.16463 1.04959 1.29032 1.23954 1.00195 0.95623 0.87868 1.17510 0.96077 0.89875 0.93063 1.22549 0.99664 1.01573 0.91885 1.23233 0.89493 0.85779 1.02276 1.67035 1.18698 1.27315 1.07813 1.17928 0.94408 0.87184 0.89307 1.43214 1.42964 1.15303 1.08321 1.23305 1.03314 0.87956 1.01338 1.22891 1.05757 1.02525 0.87212 1.70360 1.16987 1.06903 1.28214 1.25847 1.01761 0.97906 0.83889 1.21491 1.00257 0.93429 1.02240 1.74789 1.15442 1.04090 1.15054 1.85277 1.52021 1.24742 1.36262 0.92833 0.98548 0.98324 0.86253 0.86234 0.81567 0.76522 0.78278 0.78303 0.75368 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.18 13.29 21.45 0.28 -53.89 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 41.12 29.54 68.60 2.03 43.14 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.53 -26.95 9.11 25.60 0.23 -26.72 16 8 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.03 1.49 4.96 29.85 0.15 1.64 16 10 C -0.02 -0.53 5.78 29.85 0.17 -0.35 16 11 C 0.22 7.44 7.75 88.36 0.68 8.12 16 12 N -0.49 -16.37 11.35 -302.57 -3.44 -19.80 16 13 C 0.19 5.96 7.83 137.34 1.08 7.03 16 14 C 0.04 1.09 5.91 -19.86 -0.12 0.98 16 15 C -0.13 -2.57 9.79 22.59 0.22 -2.35 16 16 C 0.15 2.24 11.17 84.61 0.94 3.18 16 17 N -0.50 -9.57 9.88 -193.01 -1.91 -11.47 16 18 C 0.34 7.22 7.49 132.72 0.99 8.22 16 19 N -0.42 -8.73 2.98 -355.94 -1.06 -9.80 16 20 C -0.03 -0.56 11.17 83.03 0.93 0.37 16 21 C -0.04 -0.77 11.85 83.51 0.99 0.22 16 22 N -0.51 -12.00 11.24 -199.67 -2.24 -14.25 16 23 C 0.19 3.92 11.89 179.99 2.14 6.06 16 24 C -0.15 -3.32 9.18 22.70 0.21 -3.11 16 25 N -0.38 -12.44 11.94 -59.20 -0.71 -13.15 16 26 O 0.08 2.53 11.29 74.62 0.84 3.38 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.17 2.93 7.96 -2.91 -0.02 2.91 16 33 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.23 3.52 7.07 -2.91 -0.02 3.50 16 37 H 0.16 3.16 6.67 -2.91 -0.02 3.14 16 Total: -1.00 -67.73 336.67 4.00 -63.73 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.12 Total: 8.37 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 9.09 Total: 3.73 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -9.07 Total: -122.36 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.84 Total: 3.38 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -67.73 4.00 -63.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812810245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.287 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds