Wall clock time and date at job start Fri Apr 10 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.47254 * 180.02562 * 18 17 16 20 20 C 1.38707 * 120.40173 * 89.99487 * 19 18 17 21 21 C 1.38572 * 118.43266 * 179.97438 * 20 19 18 22 22 C 1.38394 * 119.14890 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.63457 * 180.02562 * 22 21 20 24 24 N 1.31951 * 120.73222 * 0.02562 * 22 21 20 25 25 C 1.31904 * 121.70264 * 359.71894 * 24 22 21 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.00897 * 111.00316 * 176.04452 * 13 11 10 32 32 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 33 33 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 34 34 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 35 35 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 36 36 H 1.09006 * 109.46893 * 299.99771 * 18 17 16 37 37 H 1.08995 * 109.47255 * 59.99639 * 18 17 16 38 38 H 1.08000 * 120.78516 * 359.96568 * 20 19 18 39 39 H 1.08004 * 120.42174 * 179.97438 * 21 20 19 40 40 H 1.08006 * 119.60760 * 180.28908 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0067 -0.8421 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1298 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9580 -6.4586 -1.3302 17 6 3.9050 -7.5698 -1.4507 18 6 4.3187 -7.7309 -2.9148 19 6 5.2925 -8.8744 -3.0389 20 6 4.8356 -10.1634 -3.2706 21 6 5.7667 -11.1840 -3.3782 22 6 7.1120 -10.8853 -3.2512 23 17 8.2893 -12.1541 -3.3845 24 7 7.5098 -9.6468 -3.0300 25 6 6.6511 -8.6509 -2.9271 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.1635 -5.9552 1.2521 32 1 1.3475 -5.1033 2.0511 33 1 2.6930 -5.9595 -2.1186 34 1 4.7871 -7.3627 -0.8449 35 1 3.4330 -8.4887 -1.1029 36 1 3.4366 -7.9379 -3.5209 37 1 4.7907 -6.8119 -3.2622 38 1 3.7791 -10.3668 -3.3648 39 1 5.4465 -12.1997 -3.5580 40 1 7.0143 -7.6492 -2.7503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818122503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:19 Heat of formation + Delta-G solvation = -30.923757 kcal Electronic energy + Delta-G solvation = -21932.046809 eV Core-core repulsion = 18385.580471 eV Total energy + Delta-G solvation = -3546.466338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85010 -39.79180 -37.18543 -36.07408 -35.14609 -33.56998 -32.81762 -32.46620 -30.13781 -29.20045 -26.47150 -24.66893 -24.32871 -23.16683 -21.95384 -20.71603 -19.82804 -17.93159 -17.33690 -17.18864 -16.55245 -16.10876 -15.67568 -15.49774 -15.13420 -14.94142 -14.47796 -14.34160 -14.03989 -13.77653 -13.70705 -13.45794 -12.70764 -12.42387 -12.34772 -12.05738 -11.92736 -11.85430 -11.68475 -11.53694 -10.91170 -10.70795 -10.57753 -10.44295 -10.19661 -10.08451 -9.83031 -9.40401 -9.34485 -9.16827 -9.01696 -8.38191 -8.23419 -5.95810 -3.98025 0.36132 0.63965 1.35911 2.71660 3.01964 3.21737 3.33075 3.39943 3.43284 3.95196 4.20837 4.27106 4.36003 4.47899 4.50091 4.59639 4.79366 4.85825 5.07257 5.10198 5.14928 5.33702 5.39592 5.40493 5.49782 5.64866 5.71517 5.79593 5.96140 6.32110 6.40625 6.61984 7.05566 7.20506 7.32149 7.53130 7.73564 7.76572 7.93768 8.10791 8.24945 8.46157 9.09977 9.65245 11.15001 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.002023 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.176570 B =13836.460858 C =14613.141203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.483 3.517 15 O -0.553 6.553 16 N -0.733 5.733 17 C 0.123 3.877 18 C -0.090 4.090 19 C -0.127 4.127 20 C -0.057 4.057 21 C -0.152 4.152 22 C 0.170 3.830 23 Cl -0.033 7.033 24 N -0.476 5.476 25 C 0.127 3.873 26 H 0.259 0.741 27 H 0.013 0.987 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.334 0.666 32 H 0.348 0.652 33 H 0.404 0.596 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -23.775 -10.049 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.431 6.431 16 N -0.386 5.386 17 C -0.001 4.001 18 C -0.128 4.128 19 C -0.129 4.129 20 C -0.083 4.083 21 C -0.173 4.173 22 C 0.006 3.994 23 Cl -0.005 7.005 24 N -0.186 5.186 25 C -0.031 4.031 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.239 0.761 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.092 -23.366 -9.442 27.147 hybrid contribution 0.263 -0.102 -0.418 0.505 sum 10.354 -23.468 -9.860 27.481 Atomic orbital electron populations 1.69975 1.05942 1.26426 1.50800 1.24998 0.94820 0.99079 0.95483 0.86646 0.79893 0.83756 0.77982 1.20782 1.21262 1.19980 1.21273 0.92893 0.91312 1.50619 0.92987 1.19018 0.93563 0.89827 0.98218 1.21663 0.98859 0.92160 1.00698 1.21849 0.93497 0.93232 0.95137 0.88387 1.58991 1.26923 1.44270 1.03299 1.22806 0.82169 0.85710 0.82421 1.90656 1.61041 1.54218 1.37140 1.46154 1.46848 1.34945 1.10640 1.21246 0.93438 0.90463 0.94984 1.20761 0.98306 0.96692 0.97026 1.20814 0.95748 0.95644 1.00734 1.21564 1.00565 0.91388 0.94754 1.21863 0.91363 1.01649 1.02389 1.21701 0.88528 0.89607 0.99571 1.98416 1.59295 1.46859 1.95883 1.67053 1.40054 0.99055 1.12425 1.22694 0.88494 0.97661 0.94208 0.93095 0.96882 0.94648 0.92832 0.92802 0.85464 0.83788 0.76118 0.91388 0.91622 0.89481 0.89142 0.83528 0.83560 0.81498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.03 0.77 4.86 -27.89 -0.14 0.63 16 10 C -0.10 -1.85 4.78 -26.73 -0.13 -1.98 16 11 C 0.08 1.25 3.15 -68.86 -0.22 1.03 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 13 N -0.81 -13.15 8.44 -5.66 -0.05 -13.20 16 14 C 0.48 7.07 7.07 -10.99 -0.08 6.99 16 15 O -0.55 -9.81 16.25 5.55 0.09 -9.72 16 16 N -0.73 -7.80 5.56 -60.30 -0.33 -8.13 16 17 C 0.12 1.11 5.66 -4.04 -0.02 1.09 16 18 C -0.09 -0.52 5.48 -27.88 -0.15 -0.67 16 19 C -0.13 -0.85 5.15 -104.48 -0.54 -1.39 16 20 C -0.06 -0.34 9.86 -39.28 -0.39 -0.73 16 21 C -0.15 -1.02 9.88 -39.40 -0.39 -1.41 16 22 C 0.17 1.53 7.27 -17.44 -0.13 1.40 16 23 Cl -0.03 -0.28 29.11 -51.86 -1.51 -1.79 16 24 N -0.48 -4.83 10.34 -10.36 -0.11 -4.94 16 25 C 0.13 1.03 10.86 -17.56 -0.19 0.84 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.33 4.68 9.06 -39.29 -0.36 4.33 16 32 H 0.35 5.81 8.58 -39.29 -0.34 5.47 16 33 H 0.40 3.41 8.47 -40.82 -0.35 3.06 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -33.95 361.56 -9.15 -43.10 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.63 Total: 6.09 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.78 Total: -7.50 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.25 Total: -52.10 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.95 -9.15 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818122503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.181 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds