Wall clock time and date at job start Fri Apr 10 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.47254 * 180.02562 * 18 17 16 20 20 C 1.38707 * 120.40173 * 89.99487 * 19 18 17 21 21 C 1.38572 * 118.43266 * 179.97438 * 20 19 18 22 22 C 1.38394 * 119.14890 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.63457 * 180.02562 * 22 21 20 24 24 N 1.31951 * 120.73222 * 0.02562 * 22 21 20 25 25 C 1.31904 * 121.70264 * 359.71894 * 24 22 21 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.00897 * 111.00316 * 176.04452 * 13 11 10 32 32 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 33 33 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 34 34 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 35 35 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 36 36 H 1.09006 * 109.46893 * 299.99771 * 18 17 16 37 37 H 1.08995 * 109.47255 * 59.99639 * 18 17 16 38 38 H 1.08000 * 120.78516 * 359.96568 * 20 19 18 39 39 H 1.08004 * 120.42174 * 179.97438 * 21 20 19 40 40 H 1.08006 * 119.60760 * 180.28908 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0067 -0.8421 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1298 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9580 -6.4586 -1.3302 17 6 3.9050 -7.5698 -1.4507 18 6 4.3187 -7.7309 -2.9148 19 6 5.2925 -8.8744 -3.0389 20 6 4.8356 -10.1634 -3.2706 21 6 5.7667 -11.1840 -3.3782 22 6 7.1120 -10.8853 -3.2512 23 17 8.2893 -12.1541 -3.3845 24 7 7.5098 -9.6468 -3.0300 25 6 6.6511 -8.6509 -2.9271 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.1635 -5.9552 1.2521 32 1 1.3475 -5.1033 2.0511 33 1 2.6930 -5.9595 -2.1186 34 1 4.7871 -7.3627 -0.8449 35 1 3.4330 -8.4887 -1.1029 36 1 3.4366 -7.9379 -3.5209 37 1 4.7907 -6.8119 -3.2622 38 1 3.7791 -10.3668 -3.3648 39 1 5.4465 -12.1997 -3.5580 40 1 7.0143 -7.6492 -2.7503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818122503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:19 Heat of formation + Delta-G solvation = -55.682415 kcal Electronic energy + Delta-G solvation = -21933.120425 eV Core-core repulsion = 18385.580471 eV Total energy + Delta-G solvation = -3547.539954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42853 -40.91889 -37.79944 -37.04249 -36.50972 -34.78477 -34.28726 -33.03576 -31.89541 -29.97276 -28.00430 -25.89592 -24.85590 -24.39984 -22.58508 -22.28775 -21.09405 -18.68510 -18.43339 -18.00073 -17.89383 -17.41146 -16.90038 -16.44472 -16.24316 -15.96761 -15.61183 -15.28165 -14.96147 -14.82692 -14.62807 -14.25266 -14.22124 -13.78477 -13.41565 -13.32696 -12.95858 -12.77860 -12.55134 -12.50368 -12.46037 -12.27147 -12.20560 -11.73388 -11.62262 -11.22699 -10.98855 -10.95467 -10.66945 -10.46585 -10.12661 -9.91809 -9.57693 -8.11920 -6.21656 -0.19182 0.13126 0.77348 1.43073 1.44570 1.53516 1.55759 2.17571 2.46188 2.56252 3.21239 3.44015 3.59818 3.69626 3.79646 3.87005 3.90534 4.01804 4.07476 4.14803 4.26991 4.36537 4.56090 4.61627 4.82252 4.84773 4.86569 4.97460 5.04411 5.20874 5.29350 5.41615 5.48196 5.60064 5.88228 6.01880 6.13791 6.33077 6.48180 6.57458 6.64017 6.97569 7.18758 7.46334 8.99059 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.002023 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.176570 B =13836.460858 C =14613.141203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.001 3.999 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.083 4.083 11 C 0.085 3.915 12 H 0.114 0.886 13 N -0.821 5.821 14 C 0.488 3.512 15 O -0.586 6.586 16 N -0.714 5.714 17 C 0.124 3.876 18 C -0.077 4.077 19 C -0.125 4.125 20 C -0.053 4.053 21 C -0.150 4.150 22 C 0.148 3.852 23 Cl -0.040 7.040 24 N -0.510 5.510 25 C 0.112 3.888 26 H 0.261 0.739 27 H -0.004 1.004 28 H 0.004 0.996 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.346 0.654 32 H 0.344 0.656 33 H 0.418 0.582 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.177 0.823 39 H 0.168 0.832 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 -24.090 -11.420 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.121 4.121 11 C -0.031 4.031 12 H 0.132 0.868 13 N -0.350 5.350 14 C 0.273 3.727 15 O -0.466 6.466 16 N -0.367 5.367 17 C 0.000 4.000 18 C -0.115 4.115 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.171 4.171 22 C -0.015 4.015 23 Cl -0.011 7.011 24 N -0.220 5.220 25 C -0.045 4.045 26 H 0.070 0.930 27 H 0.015 0.985 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.194 0.806 39 H 0.186 0.814 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 10.224 -23.697 -10.864 28.002 hybrid contribution 0.202 -0.031 -0.002 0.204 sum 10.427 -23.727 -10.866 28.103 Atomic orbital electron populations 1.70105 1.07567 1.27427 1.51842 1.25894 0.95705 1.02981 0.95127 0.85554 0.78585 0.79058 0.78458 1.19593 1.21133 1.19224 1.21742 0.93361 0.92759 1.50142 0.92618 1.18837 0.93931 0.91325 0.95819 1.21399 0.97710 0.92110 1.00873 1.21656 0.93789 0.92049 0.95557 0.86812 1.58972 1.27306 1.45308 1.03409 1.22355 0.81935 0.85238 0.83130 1.90651 1.62109 1.55343 1.38537 1.45998 1.45891 1.34938 1.09846 1.21314 0.92193 0.89402 0.97078 1.20691 0.99007 0.96911 0.94854 1.20904 0.95240 0.96368 1.00267 1.21956 1.01872 0.90730 0.93332 1.22147 0.90458 1.03058 1.01415 1.21961 0.89407 0.89416 1.00727 1.98404 1.59765 1.46985 1.95983 1.66981 1.41373 0.99942 1.13754 1.22972 0.89232 0.97794 0.94492 0.92999 0.98519 0.97740 0.94196 0.91017 0.84036 0.84258 0.74477 0.93015 0.91918 0.87122 0.88024 0.80601 0.81407 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 8 H 0.06 2.98 7.74 -2.91 -0.02 2.95 16 9 C 0.04 1.92 4.86 29.85 0.15 2.06 16 10 C -0.08 -3.14 4.78 30.59 0.15 -2.99 16 11 C 0.09 2.60 3.15 44.17 0.14 2.74 16 12 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 13 N -0.82 -26.56 8.44 -171.81 -1.45 -28.01 16 14 C 0.49 13.49 7.07 87.66 0.62 14.11 16 15 O -0.59 -20.25 16.25 -3.04 -0.05 -20.30 16 16 N -0.71 -13.33 5.56 -463.08 -2.57 -15.90 16 17 C 0.12 1.93 5.66 86.38 0.49 2.42 16 18 C -0.08 -0.63 5.48 29.85 0.16 -0.46 16 19 C -0.13 -1.39 5.15 -19.77 -0.10 -1.49 16 20 C -0.05 -0.49 9.86 22.46 0.22 -0.27 16 21 C -0.15 -1.74 9.88 22.39 0.22 -1.52 16 22 C 0.15 2.58 7.27 84.71 0.62 3.19 16 23 Cl -0.04 -0.66 29.11 -2.72 -0.08 -0.74 16 24 N -0.51 -10.19 10.34 -186.69 -1.93 -12.12 16 25 C 0.11 1.70 10.86 84.66 0.92 2.62 16 26 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.00 0.23 7.75 -2.39 -0.02 0.22 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.35 9.50 9.06 -89.70 -0.81 8.69 16 32 H 0.34 11.57 8.58 -89.69 -0.77 10.80 16 33 H 0.42 5.60 8.47 -92.70 -0.79 4.82 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 0.46 8.10 -2.38 -0.02 0.45 16 37 H 0.10 0.67 8.09 -2.39 -0.02 0.65 16 38 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -74.21 361.56 -0.78 -74.99 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -1.28 Total: 20.73 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.27 Total: -8.95 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -5.67 Total: -111.58 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -74.21 -0.78 -74.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818122503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.311 kcal (2) G-P(sol) polarization free energy of solvation -74.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds