Wall clock time and date at job start Fri Apr 10 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00298 * 2 1 4 4 H 1.48507 * 109.46887 * 269.99995 * 3 2 1 5 5 H 1.48499 * 109.47041 * 29.99527 * 3 2 1 6 6 H 1.48492 * 109.47465 * 150.00065 * 3 2 1 7 7 C 1.37878 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00368 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00204 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.51849 * 300.08335 * 9 7 2 11 11 C 1.53038 * 109.49932 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.53618 * 178.68253 * 11 9 7 13 13 C 1.53197 * 109.31328 * 61.36570 * 12 11 9 14 14 N 1.46921 * 108.77333 * 305.36154 * 13 12 11 15 15 C 1.34776 * 120.63178 * 233.58421 * 14 13 12 16 16 O 1.21595 * 120.00144 * 174.84900 * 15 14 13 17 17 N 1.34779 * 119.99894 * 354.84551 * 15 14 13 18 18 C 1.40220 * 119.99872 * 185.26555 * 17 15 14 19 19 C 1.39148 * 120.46361 * 17.21019 * 18 17 15 20 20 C 1.38548 * 118.41887 * 179.77783 * 19 18 17 21 21 C 1.38461 * 119.25997 * 0.49639 * 20 19 18 22 22 F 1.35104 * 119.55786 * 179.72181 * 21 20 19 23 23 N 1.32078 * 120.87690 * 359.74982 * 21 20 19 24 24 C 1.32030 * 121.72562 * 359.97438 * 23 21 20 25 25 F 1.35102 * 119.67856 * 179.97438 * 24 23 21 26 26 C 1.46933 * 118.74018 * 53.61313 * 14 13 12 27 27 H 0.97007 * 120.00121 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.45790 * 58.66359 * 11 9 7 29 29 H 1.09003 * 109.45786 * 298.69877 * 11 9 7 30 30 H 1.08998 * 109.49665 * 181.31366 * 12 11 9 31 31 H 1.08995 * 109.50204 * 301.38091 * 12 11 9 32 32 H 1.08999 * 109.58320 * 65.14941 * 13 12 11 33 33 H 1.09002 * 109.58787 * 185.57624 * 13 12 11 34 34 H 0.96998 * 119.99914 * 5.26965 * 17 15 14 35 35 H 1.07995 * 120.79001 * 0.02562 * 19 18 17 36 36 H 1.08004 * 120.36505 * 180.21628 * 20 19 18 37 37 H 1.08998 * 109.58755 * 66.16983 * 26 14 13 38 38 H 1.08994 * 109.58523 * 186.45691 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6226 -2.5569 0.8893 11 6 2.2449 -3.6629 0.0005 12 6 1.4809 -4.9885 0.0337 13 6 0.6056 -5.1003 -1.2186 14 7 -0.2530 -3.9110 -1.3031 15 6 -1.5893 -4.0361 -1.4256 16 8 -2.2973 -3.0478 -1.4003 17 7 -2.1409 -5.2565 -1.5761 18 6 -3.5173 -5.3793 -1.8140 19 6 -4.2587 -4.2846 -2.2477 20 6 -5.6149 -4.4546 -2.4742 21 6 -6.1875 -5.6959 -2.2537 22 9 -7.5105 -5.8670 -2.4671 23 7 -5.4575 -6.7146 -1.8368 24 6 -4.1615 -6.5952 -1.6147 25 9 -3.4546 -7.6646 -1.1883 26 6 0.3730 -2.5827 -1.2521 27 1 -0.4851 0.8401 -0.0004 28 1 2.8871 -3.5918 0.8783 29 1 2.8560 -3.6184 -0.9010 30 1 2.1896 -5.8163 0.0572 31 1 0.8511 -5.0234 0.9226 32 1 1.2394 -5.1570 -2.1035 33 1 -0.0143 -5.9944 -1.1526 34 1 -1.5858 -6.0500 -1.5199 35 1 -3.7874 -3.3262 -2.4079 36 1 -6.2196 -3.6270 -2.8146 37 1 0.9879 -2.4342 -2.1398 38 1 -0.4003 -1.8157 -1.2108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823541999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:25 Heat of formation + Delta-G solvation = -78.129737 kcal Electronic energy + Delta-G solvation = -25776.462164 eV Core-core repulsion = 21676.152141 eV Total energy + Delta-G solvation = -4100.310023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.30711 -50.14553 -42.14752 -40.72288 -38.68212 -36.37060 -35.29961 -33.82028 -33.17087 -31.60598 -30.54072 -27.06714 -26.40135 -25.31357 -24.51269 -23.48512 -21.92777 -20.80181 -19.90730 -19.64217 -18.71668 -18.66603 -18.06095 -17.78382 -17.06070 -16.81358 -16.66360 -16.44256 -16.20888 -15.80297 -15.27292 -15.24764 -14.69928 -14.62727 -14.38415 -14.29312 -14.24213 -14.04710 -13.78182 -13.51295 -12.86847 -12.69465 -12.38939 -12.27364 -12.22099 -11.89178 -11.64122 -11.58757 -11.12608 -10.96163 -10.90651 -10.70653 -10.49620 -9.65945 -9.19033 -8.08692 -6.24851 -0.48917 -0.22835 1.26133 1.43648 1.45125 1.54470 1.83334 1.87903 2.31532 2.43738 2.65981 2.74269 3.20159 3.35750 3.55997 3.88417 3.98122 4.12235 4.27832 4.36745 4.59375 4.64628 4.70132 4.76728 4.82578 4.86645 4.97168 5.11180 5.20864 5.27327 5.30559 5.46302 5.53989 5.59430 5.76790 5.93654 6.03149 6.06230 6.35957 6.77820 6.87752 7.33065 7.45418 8.94532 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.003587 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.000225 B = 7804.374226 C = 9023.599562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.037 3.963 10 H -0.013 1.013 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.104 3.896 14 N -0.614 5.614 15 C 0.698 3.302 16 O -0.600 6.600 17 N -0.662 5.662 18 C 0.107 3.893 19 C -0.060 4.060 20 C -0.148 4.148 21 C 0.304 3.696 22 F -0.105 7.105 23 N -0.541 5.541 24 C 0.300 3.700 25 F -0.102 7.102 26 C 0.142 3.858 27 H 0.260 0.740 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.424 0.576 35 H 0.179 0.821 36 H 0.191 0.809 37 H 0.045 0.955 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -13.563 -6.219 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.005 0.995 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.018 4.018 14 N -0.348 5.348 15 C 0.400 3.600 16 O -0.479 6.479 17 N -0.312 5.312 18 C 0.005 3.995 19 C -0.087 4.087 20 C -0.169 4.169 21 C 0.150 3.850 22 F -0.084 7.084 23 N -0.261 5.261 24 C 0.143 3.857 25 F -0.081 7.081 26 C 0.019 3.981 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.266 0.734 35 H 0.196 0.804 36 H 0.208 0.792 37 H 0.063 0.937 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.756 -13.556 -6.047 15.920 hybrid contribution 0.713 1.158 0.294 1.391 sum -5.043 -12.398 -5.753 14.568 Atomic orbital electron populations 1.70057 1.07199 1.27251 1.50485 1.25811 0.95534 1.02598 0.94612 0.85628 0.78716 0.79458 0.78292 1.19940 1.21524 1.19068 1.21498 0.93269 0.91468 1.51210 0.92106 1.18924 0.93123 0.93682 0.92498 0.99504 1.21516 0.97708 0.94051 1.01087 1.21913 0.99051 0.98476 0.97077 1.21995 0.93770 0.86192 0.99873 1.47784 1.03381 1.09747 1.73881 1.16001 0.83095 0.82694 0.78227 1.90798 1.60450 1.37982 1.58692 1.42575 1.05897 1.08896 1.73844 1.18361 0.85080 0.94087 1.01977 1.22237 0.93202 1.00067 0.93224 1.22110 0.95450 0.97261 1.02114 1.17578 0.79168 0.89328 0.98974 1.91653 1.28959 1.95991 1.91810 1.65917 1.06350 1.36019 1.17847 1.16807 0.85205 0.82771 1.00931 1.91637 1.75378 1.54170 1.86879 1.21743 0.97083 0.81147 0.98087 0.93074 0.93168 0.92073 0.87649 0.93236 0.89073 0.88430 0.73441 0.80406 0.79182 0.93716 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.71 11.40 21.45 0.24 -52.47 16 2 C 0.01 0.77 5.30 84.66 0.45 1.22 16 3 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -28.08 8.56 25.60 0.22 -27.86 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.04 1.75 2.25 -11.46 -0.03 1.72 16 10 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 11 C -0.11 -3.75 5.11 30.62 0.16 -3.59 16 12 C -0.13 -3.33 6.08 30.67 0.19 -3.14 16 13 C 0.10 2.50 6.39 86.37 0.55 3.05 16 14 N -0.61 -21.65 2.97 -836.89 -2.49 -24.14 16 15 C 0.70 24.95 8.17 179.05 1.46 26.41 16 16 O -0.60 -26.27 12.60 -4.02 -0.05 -26.32 16 17 N -0.66 -17.57 5.28 -316.60 -1.67 -19.24 16 18 C 0.11 2.82 6.56 38.21 0.25 3.08 16 19 C -0.06 -1.56 8.92 22.56 0.20 -1.36 16 20 C -0.15 -3.09 10.07 22.40 0.23 -2.87 16 21 C 0.30 7.19 8.40 84.71 0.71 7.90 16 22 F -0.11 -2.37 17.29 44.97 0.78 -1.59 16 23 N -0.54 -14.54 10.38 -197.59 -2.05 -16.59 16 24 C 0.30 7.66 8.43 84.85 0.71 8.38 16 25 F -0.10 -2.39 16.77 44.97 0.75 -1.63 16 26 C 0.14 6.41 5.41 86.36 0.47 6.88 16 27 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 1.64 5.64 -2.39 -0.01 1.63 16 34 H 0.42 8.48 5.83 -92.71 -0.54 7.94 16 35 H 0.18 5.49 5.36 -2.92 -0.02 5.48 16 36 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 4.56 5.13 -2.39 -0.01 4.55 16 Total: -1.00 -66.13 320.27 3.70 -62.43 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.59 Total: 15.19 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 5.57 Total: 19.82 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -5.97 Total: -112.43 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.05 Total: -26.32 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 1.53 Total: -3.23 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -66.13 3.70 -62.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823541999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.701 kcal (2) G-P(sol) polarization free energy of solvation -66.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds