Wall clock time and date at job start Fri Apr 10 2020 22:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47238 * 2 1 4 4 C 1.38317 * 120.83765 * 86.85573 * 3 2 1 5 5 Cl 1.73603 * 120.41501 * 359.74431 * 4 3 2 6 6 N 1.32665 * 119.16944 * 180.02562 * 4 3 2 7 7 C 1.31784 * 120.98226 * 0.02562 * 6 4 3 8 8 C 1.50694 * 119.07638 * 179.97438 * 7 6 4 9 9 N 1.31742 * 121.85133 * 359.97438 * 7 6 4 10 10 C 1.33034 * 120.72133 * 0.02562 * 9 7 6 11 11 N 1.38556 * 120.52321 * 180.02562 * 10 9 7 12 12 C 1.47902 * 111.00318 * 63.15604 * 11 10 9 13 13 C 1.53989 * 107.05891 * 214.15901 * 12 11 10 14 14 C 1.54599 * 105.14005 * 1.21999 * 13 12 11 15 15 O 1.42904 * 110.72265 * 263.42511 * 14 13 12 16 16 C 1.50701 * 110.72628 * 140.32047 * 14 13 12 17 17 H 1.08006 * 119.99939 * 241.45754 * 16 14 13 18 18 C 1.37873 * 120.00193 * 61.44596 * 16 14 13 19 19 N 1.31518 * 120.00181 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 120.00187 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46849 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47102 * 120.00631 * 20 18 16 23 23 H 1.48493 * 109.47306 * 240.00907 * 20 18 16 24 24 C 1.48535 * 111.00077 * 305.75464 * 11 10 9 25 25 H 1.08997 * 109.47159 * 184.82893 * 1 2 3 26 26 H 1.08997 * 109.46997 * 304.82857 * 1 2 3 27 27 H 1.09000 * 109.47172 * 64.82894 * 1 2 3 28 28 H 1.09001 * 109.46974 * 240.00515 * 2 1 3 29 29 H 1.09000 * 109.47288 * 120.00591 * 2 1 3 30 30 H 1.09000 * 109.47317 * 270.02179 * 8 7 6 31 31 H 1.09009 * 109.47037 * 30.01633 * 8 7 6 32 32 H 1.09003 * 109.47959 * 150.01294 * 8 7 6 33 33 H 1.08998 * 109.91426 * 333.50580 * 12 11 10 34 34 H 1.08997 * 109.91989 * 94.79993 * 12 11 10 35 35 H 1.08996 * 110.31585 * 120.13509 * 13 12 11 36 36 H 1.09007 * 110.30780 * 242.20943 * 13 12 11 37 37 H 0.96698 * 113.99796 * 298.53823 * 15 14 13 38 38 H 0.96996 * 120.00204 * 179.97438 * 19 18 16 39 39 H 1.08993 * 110.66642 * 278.16156 * 24 11 10 40 40 H 1.08999 * 110.66105 * 41.29019 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2073 2.1110 1.1858 5 17 1.8440 1.3539 2.7052 6 7 2.6508 3.3607 1.1472 7 6 2.9244 3.9483 -0.0002 8 6 3.4253 5.3695 0.0060 9 7 2.7722 3.3282 -1.1525 10 6 2.3317 2.0737 -1.1962 11 7 2.1737 1.4252 -2.4104 12 6 3.4709 1.2780 -3.1055 13 6 3.1906 1.3969 -4.6150 14 6 1.6694 1.6502 -4.7245 15 8 0.9704 0.4295 -4.9763 16 6 1.3735 2.6634 -5.8001 17 1 0.8914 3.5958 -5.5457 18 6 1.7184 2.4003 -7.1088 19 7 2.3052 1.2648 -7.4187 20 14 1.3522 3.6566 -8.4419 21 1 0.6929 4.8420 -7.8373 22 1 2.6211 4.0738 -9.0909 23 1 0.4521 3.0531 -9.4570 24 6 1.3105 2.2137 -3.3266 25 1 -0.3633 -1.0240 0.0865 26 1 -0.3633 0.5869 0.8436 27 1 -0.3633 0.4371 -0.9301 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.5784 6.0536 -0.0480 31 1 3.9834 5.5541 0.9241 32 1 4.0767 5.5291 -0.8533 33 1 4.1524 2.0684 -2.7911 34 1 3.9024 0.3020 -2.8837 35 1 3.7449 2.2346 -5.0380 36 1 3.4590 0.4709 -5.1237 37 1 1.2180 -0.0017 -5.8056 38 1 2.5475 1.0796 -8.3394 39 1 0.2572 2.0454 -3.1027 40 1 1.5531 3.2746 -3.2657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826617854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:27 Heat of formation + Delta-G solvation = -19.252859 kcal Electronic energy + Delta-G solvation = -24398.822579 eV Core-core repulsion = 20852.862329 eV Total energy + Delta-G solvation = -3545.960250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.59644 -40.11233 -38.10456 -37.11162 -35.83224 -34.21263 -34.15678 -32.51683 -30.79665 -29.97429 -28.89807 -26.88789 -25.15778 -24.49815 -22.56247 -22.08711 -21.52080 -19.49799 -19.19903 -18.14954 -17.00200 -16.78873 -16.57383 -16.25950 -15.95973 -15.63058 -14.90710 -14.86858 -14.72778 -14.34486 -14.22832 -13.88411 -13.71348 -13.48079 -13.32458 -13.26086 -13.04898 -12.91162 -12.79110 -12.60124 -12.56924 -12.41244 -12.24170 -12.00999 -11.83331 -11.66804 -11.34713 -11.13269 -10.65453 -10.58432 -10.17904 -10.13046 -9.79737 -8.22562 -6.37512 -0.38899 -0.37363 0.40537 1.39616 1.43671 1.53514 2.32760 2.36793 2.48793 2.86153 3.03003 3.17353 3.51019 3.70882 3.84981 4.03312 4.07178 4.17190 4.35332 4.44307 4.46916 4.54280 4.62159 4.65896 4.70316 4.73550 4.89998 4.93615 5.04978 5.12600 5.19688 5.28771 5.36614 5.39021 5.50426 5.55763 5.63267 5.78853 6.02737 6.17074 6.66796 6.81277 7.34053 7.46958 8.83365 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.004127 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.510699 B = 6782.351797 C = 7575.192175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.152 4.152 4 C 0.218 3.782 5 Cl 0.010 6.990 6 N -0.527 5.527 7 C 0.329 3.671 8 C -0.080 4.080 9 N -0.558 5.558 10 C 0.345 3.655 11 N -0.460 5.460 12 C 0.053 3.947 13 C -0.114 4.114 14 C 0.249 3.751 15 O -0.586 6.586 16 C -0.562 4.562 17 H 0.051 0.949 18 C 0.036 3.964 19 N -0.907 5.907 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.278 1.278 24 C 0.074 3.926 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.375 0.625 38 H 0.270 0.730 39 H 0.067 0.933 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 0.658 16.154 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C -0.159 4.159 4 C 0.045 3.955 5 Cl 0.039 6.961 6 N -0.245 5.245 7 C 0.061 3.939 8 C -0.138 4.138 9 N -0.276 5.276 10 C 0.107 3.893 11 N -0.184 5.184 12 C -0.073 4.073 13 C -0.152 4.152 14 C 0.208 3.792 15 O -0.394 6.394 16 C -0.601 4.601 17 H 0.069 0.931 18 C -0.165 4.165 19 N -0.546 5.546 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.204 1.204 24 C -0.053 4.053 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.224 0.776 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.712 1.062 16.840 16.960 hybrid contribution 0.139 0.346 -1.602 1.645 sum 1.851 1.408 15.238 15.414 Atomic orbital electron populations 1.21622 0.93527 1.03104 1.01066 1.20402 0.97052 0.88760 1.04306 1.21256 1.03072 1.01165 0.90365 1.21983 0.94620 0.90308 0.88553 1.98406 1.91740 1.78383 1.27603 1.67746 1.15503 1.09759 1.31450 1.23713 0.90584 0.98292 0.81311 1.20726 1.02705 0.85043 1.05325 1.68493 1.16394 1.10981 1.31765 1.20540 0.88833 0.87056 0.92841 1.62848 1.12571 1.42261 1.00688 1.22904 0.88647 1.01323 0.94467 1.22698 0.99428 1.00772 0.92353 1.19437 0.87261 0.82687 0.89767 1.86122 1.68434 1.39721 1.45077 1.21806 1.40928 1.03677 0.93640 0.93065 1.25596 0.93483 0.97208 1.00233 1.69795 1.40807 1.24106 1.19933 0.85536 0.77987 0.79286 0.78965 1.19819 1.20302 1.20380 1.23066 0.96056 0.95080 0.91056 0.89962 0.92656 0.94298 0.89753 0.88812 0.88145 0.87686 0.89003 0.93479 0.89405 0.93409 0.92227 0.77640 0.92071 0.91483 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.89 71.98 0.71 -2.56 16 2 C -0.07 -1.69 5.49 29.85 0.16 -1.53 16 3 C -0.15 -4.52 5.19 -19.53 -0.10 -4.62 16 4 C 0.22 6.07 7.32 84.59 0.62 6.69 16 5 Cl 0.01 0.22 27.70 -2.72 -0.08 0.14 16 6 N -0.53 -15.24 10.33 -179.02 -1.85 -17.09 16 7 C 0.33 9.63 7.64 138.77 1.06 10.69 16 8 C -0.08 -1.63 10.32 71.23 0.73 -0.89 16 9 N -0.56 -19.24 8.90 -185.49 -1.65 -20.89 16 10 C 0.34 12.03 5.39 133.12 0.72 12.75 16 11 N -0.46 -17.66 4.30 -688.86 -2.96 -20.62 16 12 C 0.05 2.02 6.61 86.44 0.57 2.59 16 13 C -0.11 -5.15 5.26 31.47 0.17 -4.98 16 14 C 0.25 12.18 0.95 -10.33 -0.01 12.17 16 15 O -0.59 -29.97 13.10 -148.98 -1.95 -31.92 16 16 C -0.56 -29.96 8.14 25.60 0.21 -29.76 16 17 H 0.05 2.76 7.78 -2.91 -0.02 2.74 16 18 C 0.04 1.87 5.28 84.65 0.45 2.31 16 19 N -0.91 -47.32 11.00 21.45 0.24 -47.08 16 20 Si 0.96 41.64 29.54 68.60 2.03 43.67 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.07 3.24 5.61 86.65 0.49 3.73 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 2.38 7.47 -2.39 -0.02 2.36 16 29 H 0.09 1.94 7.16 -2.39 -0.02 1.92 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.78 7.35 -2.39 -0.02 1.76 16 34 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.05 2.30 7.84 -2.39 -0.02 2.28 16 36 H 0.06 2.80 7.99 -2.38 -0.02 2.78 16 37 H 0.37 19.44 7.46 -74.06 -0.55 18.89 16 38 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 39 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.06 2.65 7.26 -2.39 -0.02 2.63 16 Total: -1.00 -57.52 343.02 0.06 -57.46 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.51 Total: 29.75 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.77 Total: 6.58 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -6.23 Total: -105.68 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.95 Total: -31.92 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -57.52 0.06 -57.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826617854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.204 kcal (2) G-P(sol) polarization free energy of solvation -57.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds