Wall clock time and date at job start Fri Apr 10 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47307 * 2 1 4 4 N 1.31786 * 119.07736 * 90.00380 * 3 2 1 5 5 C 1.32663 * 120.98810 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 120.41872 * 179.97438 * 5 4 3 7 7 C 1.38319 * 119.16380 * 359.97438 * 5 4 3 8 8 C 1.50704 * 120.83635 * 180.02562 * 7 5 4 9 9 C 1.39522 * 118.32460 * 359.97438 * 7 5 4 10 10 N 1.38565 * 120.52286 * 180.02562 * 9 7 5 11 11 C 1.47842 * 110.99676 * 300.84229 * 10 9 7 12 12 C 1.54913 * 104.79326 * 213.63756 * 11 10 9 13 13 C 1.55137 * 101.65171 * 37.06982 * 12 11 10 14 14 O 1.42904 * 110.85196 * 82.80209 * 13 12 11 15 15 C 1.50705 * 110.70244 * 205.96196 * 13 12 11 16 16 H 1.07998 * 119.99638 * 113.60416 * 15 13 12 17 17 C 1.37871 * 120.00227 * 293.60198 * 15 13 12 18 18 N 1.31520 * 120.00189 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00003 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47287 * 59.99915 * 19 17 15 21 21 H 1.48502 * 109.47205 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47153 * 299.99654 * 19 17 15 23 23 C 1.47446 * 110.99628 * 179.97438 * 10 9 7 24 24 N 1.31746 * 119.07955 * 270.28631 * 3 2 1 25 25 H 1.08996 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46420 * 299.99736 * 1 2 3 27 27 H 1.08996 * 109.47242 * 59.99459 * 1 2 3 28 28 H 1.09002 * 109.47150 * 240.00367 * 2 1 3 29 29 H 1.09001 * 109.47829 * 120.00175 * 2 1 3 30 30 H 1.09001 * 109.46619 * 269.96983 * 8 7 5 31 31 H 1.08996 * 109.47405 * 29.97307 * 8 7 5 32 32 H 1.08997 * 109.47094 * 149.97612 * 8 7 5 33 33 H 1.08993 * 110.37646 * 332.46273 * 11 10 9 34 34 H 1.08999 * 110.37098 * 94.81213 * 11 10 9 35 35 H 1.09004 * 110.98690 * 278.98172 * 12 11 10 36 36 H 1.08997 * 111.02147 * 155.17769 * 12 11 10 37 37 H 0.96698 * 113.99864 * 66.31919 * 14 13 12 38 38 H 0.96997 * 120.00326 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88870 * 242.65971 * 23 10 9 40 40 H 1.08998 * 109.89100 * 3.69166 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2459 2.0246 1.1518 5 6 2.6875 3.2748 1.1960 6 17 2.9631 4.0561 2.7215 7 6 2.9254 3.9479 0.0113 8 6 3.4278 5.3687 0.0176 9 6 2.6896 3.2780 -1.1896 10 7 2.9131 3.9087 -2.4030 11 6 2.0873 5.1288 -2.5259 12 6 1.7406 5.2216 -4.0328 13 6 1.5434 3.7277 -4.4016 14 8 0.2261 3.2896 -4.0626 15 6 1.8186 3.4995 -5.8656 16 1 2.6646 2.9007 -6.1691 17 6 0.9903 4.0550 -6.8175 18 7 -0.0403 4.7837 -6.4479 19 14 1.3309 3.7716 -8.6322 20 1 1.2858 2.3160 -8.9229 21 1 0.3022 4.4700 -9.4440 22 1 2.6753 4.3029 -8.9724 23 6 2.5979 3.0122 -3.5304 24 7 2.2404 2.0264 -1.1514 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 2.5800 6.0538 0.0186 31 1 4.0318 5.5367 0.9092 32 1 4.0349 5.5434 -0.8707 33 1 1.1781 5.0330 -1.9326 34 1 2.6555 6.0046 -2.2126 35 1 2.5651 5.6575 -4.5970 36 1 0.8217 5.7868 -4.1885 37 1 -0.4736 3.7091 -4.5818 38 1 -0.6233 5.1743 -7.1176 39 1 3.4973 2.8232 -4.1165 40 1 2.1957 2.0713 -3.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826618359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:33 Heat of formation + Delta-G solvation = -18.191449 kcal Electronic energy + Delta-G solvation = -24450.556239 eV Core-core repulsion = 20904.642016 eV Total energy + Delta-G solvation = -3545.914223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.60530 -40.21065 -38.06170 -37.19381 -35.42937 -34.23857 -34.12880 -33.24120 -30.98924 -30.04471 -28.11608 -26.96461 -24.94314 -24.74950 -22.88946 -21.96899 -21.50572 -19.38106 -18.96946 -18.43834 -16.96552 -16.86906 -16.68852 -16.03501 -15.75774 -15.55371 -15.29249 -15.12609 -14.87369 -14.26595 -14.15135 -13.99421 -13.64334 -13.56013 -13.40784 -13.13774 -12.98606 -12.84033 -12.69711 -12.59439 -12.48547 -12.29455 -12.17340 -12.04777 -12.00913 -11.82074 -11.49352 -11.20940 -10.65147 -10.44326 -10.38834 -10.11669 -9.48104 -8.23457 -6.37682 -0.30629 -0.18628 0.45472 1.43102 1.44735 1.51804 2.27366 2.39122 2.58963 2.86350 3.02022 3.26649 3.59224 3.72484 3.79493 4.05599 4.09225 4.21483 4.29399 4.30789 4.33513 4.49275 4.60088 4.69795 4.75126 4.86170 4.94567 4.95937 5.05261 5.07860 5.17430 5.23042 5.28517 5.33239 5.47612 5.52123 5.77912 5.86477 5.93585 6.11506 6.65644 6.95424 7.33139 7.43996 8.82372 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.004202 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.937065 B = 6662.175023 C = 7578.705214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C 0.343 3.657 4 N -0.543 5.543 5 C 0.222 3.778 6 Cl 0.006 6.994 7 C -0.197 4.197 8 C -0.102 4.102 9 C 0.357 3.643 10 N -0.459 5.459 11 C 0.061 3.939 12 C -0.126 4.126 13 C 0.228 3.772 14 O -0.597 6.597 15 C -0.558 4.558 16 H 0.056 0.944 17 C 0.034 3.966 18 N -0.914 5.914 19 Si 0.959 3.041 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.270 1.270 23 C 0.051 3.949 24 N -0.561 5.561 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.081 0.919 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -0.717 14.219 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C 0.075 3.925 4 N -0.262 5.262 5 C 0.051 3.949 6 Cl 0.035 6.965 7 C -0.205 4.205 8 C -0.160 4.160 9 C 0.116 3.884 10 N -0.175 5.175 11 C -0.064 4.064 12 C -0.165 4.165 13 C 0.188 3.812 14 O -0.406 6.406 15 C -0.596 4.596 16 H 0.074 0.926 17 C -0.166 4.166 18 N -0.554 5.554 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.195 1.195 23 C -0.075 4.075 24 N -0.281 5.281 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.691 -1.640 14.641 15.461 hybrid contribution -0.645 0.917 -1.449 1.832 sum 4.045 -0.723 13.192 13.817 Atomic orbital electron populations 1.21635 0.92866 1.03751 1.01197 1.20505 0.97264 0.85961 1.05246 1.23574 0.89766 0.97810 0.81327 1.67674 1.17935 1.09586 1.31023 1.21865 0.94483 0.90235 0.88307 1.98394 1.93554 1.77236 1.27335 1.21001 1.07484 1.01763 0.90293 1.20856 1.02052 0.88232 1.04816 1.20382 0.87167 0.89182 0.91649 1.60504 1.49707 1.07559 0.99768 1.23249 0.94311 0.90655 0.98156 1.23081 1.01050 0.99790 0.92560 1.19818 0.80213 0.89340 0.91821 1.86125 1.18112 1.70791 1.65601 1.21784 1.12878 1.32961 0.91958 0.92565 1.25626 0.94433 0.93498 1.03083 1.69646 1.16158 1.33919 1.35632 0.85597 0.78100 0.78210 0.79625 1.20243 1.20629 1.19539 1.22900 0.98293 0.96687 0.89654 1.68229 1.16859 1.11729 1.31236 0.88710 0.92682 0.94516 0.88720 0.87063 0.89378 0.89179 0.89696 0.94125 0.86599 0.91544 0.91590 0.77216 0.91992 0.90089 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.89 71.98 0.71 -2.52 16 2 C -0.05 -1.27 6.37 29.85 0.19 -1.08 16 3 C 0.34 11.20 6.90 138.77 0.96 12.16 16 4 N -0.54 -17.09 10.33 -179.02 -1.85 -18.94 16 5 C 0.22 6.52 7.32 84.59 0.62 7.14 16 6 Cl 0.01 0.14 27.63 -2.72 -0.08 0.06 16 7 C -0.20 -5.94 5.77 -19.53 -0.11 -6.05 16 8 C -0.10 -2.32 7.87 71.24 0.56 -1.76 16 9 C 0.36 12.98 6.14 133.12 0.82 13.80 16 10 N -0.46 -17.33 4.70 -691.13 -3.24 -20.58 16 11 C 0.06 2.17 5.14 86.78 0.45 2.62 16 12 C -0.13 -5.46 5.67 31.98 0.18 -5.28 16 13 C 0.23 11.12 0.86 -10.34 -0.01 11.11 16 14 O -0.60 -31.35 13.10 -148.98 -1.95 -33.31 16 15 C -0.56 -29.32 8.21 25.60 0.21 -29.11 16 16 H 0.06 2.95 7.53 -2.91 -0.02 2.93 16 17 C 0.03 1.75 5.28 84.65 0.45 2.19 16 18 N -0.91 -47.43 10.69 21.45 0.23 -47.20 16 19 Si 0.96 41.23 29.54 68.60 2.03 43.26 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 C 0.05 2.25 6.12 86.66 0.53 2.78 16 24 N -0.56 -21.14 8.00 -185.48 -1.48 -22.62 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.11 2.25 8.14 -2.39 -0.02 2.24 16 30 H 0.09 1.79 7.87 -2.39 -0.02 1.77 16 31 H 0.09 1.69 7.02 -2.39 -0.02 1.67 16 32 H 0.08 1.96 6.64 -2.39 -0.02 1.94 16 33 H 0.04 1.52 7.79 -2.39 -0.02 1.50 16 34 H 0.12 3.29 6.36 -2.39 -0.02 3.27 16 35 H 0.07 2.89 8.04 -2.39 -0.02 2.87 16 36 H 0.07 3.04 7.76 -2.39 -0.02 3.02 16 37 H 0.38 20.26 6.98 -74.06 -0.52 19.74 16 38 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 39 H 0.08 3.57 7.63 -2.39 -0.02 3.55 16 40 H 0.09 4.01 5.87 -2.39 -0.01 4.00 16 Total: -1.00 -58.54 335.36 -0.24 -58.78 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.56 Total: 34.53 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.55 Total: 6.01 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -6.35 Total: -109.34 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.95 Total: -33.31 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -58.54 -0.24 -58.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826618359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.589 kcal (2) G-P(sol) polarization free energy of solvation -58.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds