Wall clock time and date at job start Fri Apr 10 2020 22:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48510 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46898 * 299.99147 * 3 2 1 6 6 H 1.48488 * 109.47473 * 59.99609 * 3 2 1 7 7 C 1.37881 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00256 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99638 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50031 * 299.91745 * 9 7 2 11 11 C 1.53119 * 109.50248 * 59.99422 * 9 7 2 12 12 C 1.53124 * 109.15796 * 177.63194 * 11 9 7 13 13 C 1.53037 * 109.28148 * 302.35024 * 12 11 9 14 14 N 1.46844 * 109.52152 * 59.17731 * 13 12 11 15 15 C 1.46906 * 110.99887 * 174.16043 * 14 13 12 16 16 C 1.52997 * 109.46848 * 66.04525 * 15 14 13 17 17 C 1.50706 * 109.47203 * 179.97438 * 16 15 14 18 18 C 1.38240 * 119.98422 * 264.73203 * 17 16 15 19 19 C 1.38183 * 120.03787 * 179.72260 * 18 17 16 20 20 C 1.38482 * 120.00186 * 0.54876 * 19 18 17 21 21 F 1.35103 * 120.02178 * 179.74891 * 20 19 18 22 22 C 1.38425 * 119.96137 * 359.72140 * 20 19 18 23 23 C 1.38335 * 119.95872 * 0.02562 * 22 20 19 24 24 Cl 1.73601 * 119.99836 * 180.02562 * 23 22 20 25 25 C 1.46850 * 111.19991 * 298.25708 * 14 13 12 26 26 H 0.96999 * 119.99980 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.51997 * 57.73383 * 11 9 7 28 28 H 1.08995 * 109.57988 * 297.57180 * 11 9 7 29 29 H 1.08997 * 109.50392 * 182.40446 * 12 11 9 30 30 H 1.09008 * 109.53016 * 62.31007 * 12 11 9 31 31 H 1.08995 * 109.46089 * 299.16330 * 13 12 11 32 32 H 1.09000 * 109.45256 * 179.18504 * 13 12 11 33 33 H 1.08998 * 109.47121 * 186.04358 * 15 14 13 34 34 H 1.09000 * 109.47141 * 306.04556 * 15 14 13 35 35 H 1.08998 * 109.47584 * 300.00097 * 16 15 14 36 36 H 1.09005 * 109.46901 * 60.00396 * 16 15 14 37 37 H 1.08002 * 119.98143 * 359.97438 * 18 17 16 38 38 H 1.08007 * 119.99875 * 180.24748 * 19 18 17 39 39 H 1.08001 * 120.01987 * 180.02562 * 22 20 19 40 40 H 1.09005 * 109.46314 * 181.76064 * 25 14 13 41 41 H 1.08998 * 109.46244 * 301.72632 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6250 -2.5579 0.8909 11 6 0.3708 -2.5813 -1.2497 12 6 -0.3456 -3.9344 -1.2719 13 6 0.6939 -5.0571 -1.2389 14 7 1.5097 -4.9349 -0.0241 15 6 2.4266 -6.0748 0.1112 16 6 3.4537 -6.0403 -1.0222 17 6 4.3947 -7.2092 -0.8831 18 6 5.6041 -7.0491 -0.2330 19 6 6.4652 -8.1215 -0.0998 20 6 6.1219 -9.3549 -0.6277 21 9 6.9658 -10.4025 -0.5022 22 6 4.9134 -9.5140 -1.2836 23 6 4.0502 -8.4405 -1.4115 24 17 2.5340 -8.6390 -2.2333 25 6 2.2442 -3.6635 -0.0034 26 1 -0.4850 0.8400 -0.0004 27 1 0.9924 -2.4836 -2.1398 28 1 -0.3666 -1.7789 -1.2305 29 1 -0.9408 -4.0161 -2.1814 30 1 -0.9972 -4.0161 -0.4019 31 1 1.3360 -4.9834 -2.1165 32 1 0.1864 -6.0218 -1.2400 33 1 2.9414 -6.0151 1.0701 34 1 1.8602 -7.0047 0.0601 35 1 2.9390 -6.0999 -1.9811 36 1 4.0201 -5.1104 -0.9710 37 1 5.8743 -6.0861 0.1747 38 1 7.4082 -7.9967 0.4118 39 1 4.6445 -10.4755 -1.6954 40 1 2.8630 -3.6160 0.8928 41 1 2.8791 -3.5964 -0.8868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:37 Heat of formation + Delta-G solvation = -53.717061 kcal Electronic energy + Delta-G solvation = -23295.886162 eV Core-core repulsion = 19728.511471 eV Total energy + Delta-G solvation = -3567.374691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.98860 -40.71556 -39.68429 -37.48613 -36.09054 -34.31872 -32.54571 -31.98767 -31.64383 -28.65508 -26.90153 -25.62282 -24.19929 -23.30720 -22.96858 -22.09697 -19.99776 -18.86638 -18.41450 -17.78888 -17.02492 -16.70251 -16.58492 -16.16011 -15.81295 -15.74212 -15.17450 -14.94954 -14.85108 -14.65174 -14.37868 -14.31040 -14.04040 -13.58898 -13.39184 -13.01088 -12.86557 -12.70837 -12.68324 -12.48029 -12.39054 -12.32229 -11.89642 -11.88379 -11.69092 -11.45342 -11.35256 -10.81605 -10.61242 -10.35165 -10.06239 -9.76607 -8.93296 -8.04980 -6.18761 -0.08376 0.01899 1.00955 1.41954 1.44050 1.54736 2.35695 2.45075 3.11896 3.21319 3.22411 3.61595 3.71018 3.87864 4.02877 4.20819 4.21574 4.27177 4.37074 4.42634 4.48732 4.66288 4.68959 4.72675 4.82272 4.86526 4.94324 4.96380 5.05029 5.07084 5.11298 5.22535 5.27177 5.33754 5.44503 5.56915 5.67329 5.67923 6.00977 6.17144 6.25698 6.40652 6.50290 6.95203 7.49266 8.99774 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.003216 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.306065 B = 8704.207598 C = 9776.891368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.051 3.949 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.113 4.113 13 C 0.068 3.932 14 N -0.545 5.545 15 C 0.069 3.931 16 C -0.118 4.118 17 C -0.077 4.077 18 C -0.077 4.077 19 C -0.138 4.138 20 C 0.093 3.907 21 F -0.139 7.139 22 C -0.146 4.146 23 C -0.018 4.018 24 Cl -0.056 7.056 25 C 0.081 3.919 26 H 0.259 0.741 27 H 0.023 0.977 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.058 0.942 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -19.239 -3.020 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.012 0.988 11 C -0.142 4.142 12 C -0.151 4.151 13 C -0.060 4.060 14 N -0.268 5.268 15 C -0.059 4.059 16 C -0.157 4.157 17 C -0.079 4.079 18 C -0.095 4.095 19 C -0.157 4.157 20 C 0.074 3.926 21 F -0.118 7.118 22 C -0.165 4.165 23 C -0.045 4.045 24 Cl -0.027 7.027 25 C -0.046 4.046 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.174 0.826 40 H 0.076 0.924 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.728 -19.181 -2.679 21.673 hybrid contribution 0.635 0.935 -0.744 1.353 sum 10.363 -18.246 -3.422 21.261 Atomic orbital electron populations 1.70052 1.07220 1.26869 1.51511 1.25723 0.95612 1.02326 0.94963 0.85591 0.79236 0.79908 0.77422 1.18911 1.20848 1.20858 1.21573 0.93077 0.92085 1.50289 0.92763 1.18604 0.93095 0.91585 0.93523 0.98812 1.21453 0.99107 0.96083 0.97519 1.21606 0.97662 0.95115 1.00680 1.21987 0.94941 0.98584 0.90458 1.62153 1.24004 1.02348 1.38279 1.22181 0.92383 0.93834 0.97504 1.21325 0.97126 0.95878 1.01384 1.19842 0.96270 0.93582 0.98201 1.21152 0.91611 1.00036 0.96697 1.21495 1.02378 0.90765 1.01061 1.17581 0.88902 0.84966 1.01173 1.91514 1.69798 1.56218 1.94249 1.21062 0.93116 1.00204 1.02141 1.20578 0.89373 0.94506 1.00042 1.98390 1.29854 1.97371 1.77084 1.21987 0.95308 0.88469 0.98864 0.93210 0.95825 0.92638 0.91556 0.93318 0.95052 0.90087 0.90465 0.90263 0.90528 0.90324 0.82414 0.81869 0.82623 0.92352 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 11.35 21.45 0.24 -53.04 16 2 C 0.01 0.68 5.30 84.66 0.45 1.13 16 3 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.53 -29.01 8.57 25.60 0.22 -28.79 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.05 2.54 2.26 -11.49 -0.03 2.51 16 10 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 11 C -0.10 -4.92 5.02 30.68 0.15 -4.77 16 12 C -0.11 -4.32 6.09 30.65 0.19 -4.13 16 13 C 0.07 2.22 5.05 86.33 0.44 2.65 16 14 N -0.55 -18.64 4.86 -896.37 -4.35 -22.99 16 15 C 0.07 1.82 5.34 86.30 0.46 2.28 16 16 C -0.12 -2.80 4.16 29.85 0.12 -2.67 16 17 C -0.08 -1.56 5.14 -19.84 -0.10 -1.66 16 18 C -0.08 -1.29 9.67 22.26 0.22 -1.08 16 19 C -0.14 -2.12 10.03 22.31 0.22 -1.89 16 20 C 0.09 1.64 7.30 22.37 0.16 1.80 16 21 F -0.14 -2.58 17.27 44.97 0.78 -1.80 16 22 C -0.15 -2.59 9.81 22.34 0.22 -2.37 16 23 C -0.02 -0.36 6.31 22.32 0.14 -0.22 16 24 Cl -0.06 -1.13 27.15 -2.72 -0.07 -1.21 16 25 C 0.08 3.25 4.06 86.32 0.35 3.60 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 3.02 6.15 -2.39 -0.01 3.00 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.03 1.00 6.75 -2.39 -0.02 0.99 16 32 H 0.08 2.28 8.06 -2.39 -0.02 2.26 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.96 7.82 -2.39 -0.02 1.94 16 35 H 0.08 1.92 5.66 -2.39 -0.01 1.90 16 36 H 0.08 1.97 6.41 -2.38 -0.02 1.96 16 37 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.06 2.30 8.12 -2.38 -0.02 2.28 16 41 H 0.03 1.02 6.61 -2.39 -0.02 1.01 16 Total: -1.00 -60.25 342.14 2.86 -57.39 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.03 Total: 9.87 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 3.21 Total: -33.61 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -4.11 Total: -76.03 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.21 kcal Total: -60.25 2.86 -57.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.677 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds