Wall clock time and date at job start Fri Apr 10 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99935 * 2 1 4 4 H 1.48506 * 109.47474 * 269.99934 * 3 2 1 5 5 H 1.48499 * 109.47578 * 30.00328 * 3 2 1 6 6 H 1.48503 * 109.47153 * 150.00280 * 3 2 1 7 7 C 1.37877 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00366 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99643 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46664 * 184.89358 * 9 7 2 11 11 C 1.46898 * 111.00383 * 64.60055 * 10 9 7 12 12 C 1.53237 * 109.34151 * 172.74573 * 11 10 9 13 13 N 1.47082 * 108.52466 * 53.82451 * 12 11 10 14 14 C 1.34777 * 120.88199 * 128.79289 * 13 12 11 15 15 O 1.21593 * 119.99840 * 0.02562 * 14 13 12 16 16 C 1.47532 * 119.99971 * 180.02562 * 14 13 12 17 17 C 1.40321 * 120.60255 * 269.99828 * 16 14 13 18 18 F 1.35106 * 120.87667 * 359.97438 * 17 16 14 19 19 C 1.38741 * 118.24794 * 180.02562 * 17 16 14 20 20 C 1.38132 * 119.34707 * 0.02562 * 19 17 16 21 21 N 1.31996 * 121.18310 * 0.02562 * 20 19 17 22 22 C 1.31931 * 121.92487 * 359.65620 * 21 20 19 23 23 F 1.35104 * 119.74944 * 180.31479 * 22 21 20 24 24 C 1.47082 * 118.23658 * 308.81955 * 13 12 11 25 25 C 1.46898 * 111.00159 * 300.29302 * 10 9 7 26 26 H 0.97003 * 120.00307 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47058 * 64.89254 * 9 7 2 28 28 H 1.08999 * 109.47020 * 304.88961 * 9 7 2 29 29 H 1.08997 * 109.49347 * 52.78260 * 11 10 9 30 30 H 1.09004 * 109.48724 * 292.70165 * 11 10 9 31 31 H 1.08995 * 109.63257 * 173.53803 * 12 11 10 32 32 H 1.09000 * 109.63099 * 294.11783 * 12 11 10 33 33 H 1.08003 * 120.32849 * 180.02562 * 19 17 16 34 34 H 1.08003 * 119.41050 * 180.02562 * 20 19 17 35 35 H 1.08998 * 109.62689 * 170.88883 * 24 13 12 36 36 H 1.08990 * 109.62715 * 291.47139 * 24 13 12 37 37 H 1.08992 * 109.49398 * 67.29765 * 25 10 9 38 38 H 1.09001 * 109.49435 * 307.21627 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0010 -2.5740 -0.1198 11 6 3.6214 -3.1580 -1.4131 12 6 4.3000 -4.5226 -1.5726 13 7 3.9742 -5.3465 -0.3985 14 6 3.4819 -6.5928 -0.5431 15 8 3.3020 -7.0502 -1.6553 16 6 3.1614 -7.4021 0.6481 17 6 4.1294 -8.2377 1.2256 18 9 5.3735 -8.3205 0.7052 19 6 3.7750 -8.9776 2.3445 20 6 2.4937 -8.8700 2.8493 21 7 1.6016 -8.0768 2.2860 22 6 1.8881 -7.3473 1.2247 23 9 0.9428 -6.5454 0.6873 24 6 4.1994 -4.7741 0.9375 25 6 3.5247 -3.3995 0.9981 26 1 -0.4851 0.8400 -0.0004 27 1 3.8752 -0.7582 0.9294 28 1 3.8745 -0.6061 -0.8441 29 1 3.9406 -2.4966 -2.2185 30 1 2.5392 -3.2831 -1.4520 31 1 3.9333 -5.0107 -2.4755 32 1 5.3798 -4.3892 -1.6379 33 1 4.4938 -9.6313 2.8162 34 1 2.2169 -9.4452 3.7205 35 1 3.7660 -5.4283 1.6939 36 1 5.2694 -4.6648 1.1133 37 1 2.4440 -3.5213 0.9256 38 1 3.7738 -2.9134 1.9413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827479718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:42 Heat of formation + Delta-G solvation = -59.647723 kcal Electronic energy + Delta-G solvation = -26380.330771 eV Core-core repulsion = 22280.822188 eV Total energy + Delta-G solvation = -4099.508583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.61642 -49.33620 -40.70751 -39.57537 -37.66478 -34.63927 -32.90036 -32.30933 -31.80069 -30.68745 -28.71135 -26.04651 -24.87844 -23.98349 -23.29404 -22.23292 -20.79439 -19.25990 -18.88961 -18.44564 -17.65621 -16.91144 -16.76336 -16.38781 -16.09961 -15.85972 -15.20791 -15.12662 -14.91300 -14.64543 -14.57564 -14.16900 -13.97997 -13.62876 -13.42739 -13.31571 -12.68264 -12.50588 -12.46720 -12.36279 -11.41380 -11.33521 -11.12510 -10.73455 -10.70281 -10.49614 -10.36960 -10.17688 -10.10615 -9.90774 -9.58544 -9.52853 -8.65318 -8.64229 -7.38332 -6.15690 -4.17270 0.14572 0.36750 2.27692 2.75758 2.88567 3.02810 3.23235 3.31552 3.33912 3.36414 3.89956 4.08755 4.26087 4.33905 4.68325 4.74562 5.01257 5.10245 5.12187 5.15931 5.25687 5.33880 5.45046 5.58001 5.74709 5.82161 5.94058 5.96204 6.24662 6.51796 6.52211 6.64697 6.80778 6.97042 7.04359 7.28082 7.45711 7.87420 7.89419 7.96125 8.36820 8.85898 9.45892 10.97038 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.004075 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.311181 B = 6868.688831 C = 7401.466208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.156 3.844 10 N -0.533 5.533 11 C 0.047 3.953 12 C 0.116 3.884 13 N -0.590 5.590 14 C 0.568 3.432 15 O -0.524 6.524 16 C -0.233 4.233 17 C 0.205 3.795 18 F -0.108 7.108 19 C -0.221 4.221 20 C 0.179 3.821 21 N -0.514 5.514 22 C 0.377 3.623 23 F -0.085 7.085 24 C 0.110 3.890 25 C 0.048 3.952 26 H 0.264 0.736 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.185 0.815 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -17.207 6.345 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.595 4.595 8 H 0.092 0.908 9 C 0.029 3.971 10 N -0.257 5.257 11 C -0.082 4.082 12 C -0.006 4.006 13 N -0.322 5.322 14 C 0.352 3.648 15 O -0.401 6.401 16 C -0.240 4.240 17 C 0.177 3.823 18 F -0.086 7.086 19 C -0.242 4.242 20 C 0.023 3.977 21 N -0.229 5.229 22 C 0.223 3.777 23 F -0.064 7.064 24 C -0.013 4.013 25 C -0.082 4.082 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.182 0.818 34 H 0.202 0.798 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.663 -17.194 6.046 20.629 hybrid contribution 0.162 1.095 -0.470 1.202 sum 9.825 -16.100 5.576 19.668 Atomic orbital electron populations 1.69930 1.06405 1.27099 1.49872 1.24974 0.94685 0.99233 0.94036 0.86791 0.80346 0.83554 0.78652 1.20162 1.21272 1.18867 1.21668 0.90536 0.94760 1.52568 0.90753 1.20187 0.94763 0.85056 0.97051 1.62426 1.58485 1.03916 1.00831 1.22300 0.99277 0.93321 0.93348 1.21947 1.00293 0.90710 0.87608 1.48138 1.61864 1.13186 1.08981 1.17536 0.78123 0.81645 0.87494 1.90817 1.53111 1.71057 1.25109 1.20749 0.95181 1.05848 1.02270 1.17618 0.79399 0.93759 0.91503 1.91624 1.37266 1.94212 1.85483 1.22197 1.00270 1.04020 0.97686 1.22643 0.86980 0.91370 0.96749 1.67201 1.37358 1.08583 1.09730 1.17821 0.83078 0.88095 0.88717 1.91779 1.62887 1.68634 1.83050 1.22012 1.01399 0.95422 0.82442 1.22257 0.98644 0.91232 0.96026 0.92586 0.95178 0.95435 0.89968 0.93031 0.89009 0.90725 0.81839 0.79834 0.91178 0.90369 0.92923 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 20.90 27.37 -169.99 -4.65 16.25 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -5.99 6.69 56.52 0.38 -5.61 16 7 C -0.56 -15.07 8.32 -34.44 -0.29 -15.35 16 8 H 0.07 2.22 6.12 -52.49 -0.32 1.90 16 9 C 0.16 3.56 4.18 -4.98 -0.02 3.54 16 10 N -0.53 -10.39 4.83 -235.77 -1.14 -11.52 16 11 C 0.05 0.87 5.24 -3.70 -0.02 0.85 16 12 C 0.12 1.85 6.60 -3.60 -0.02 1.83 16 13 N -0.59 -9.45 3.01 -173.69 -0.52 -9.97 16 14 C 0.57 9.49 6.53 -12.47 -0.08 9.41 16 15 O -0.52 -10.28 16.56 5.28 0.09 -10.19 16 16 C -0.23 -3.21 3.71 -104.71 -0.39 -3.60 16 17 C 0.20 2.20 7.37 -38.61 -0.28 1.91 16 18 F -0.11 -1.22 16.93 2.25 0.04 -1.18 16 19 C -0.22 -1.54 10.09 -39.43 -0.40 -1.93 16 20 C 0.18 1.31 11.16 -17.52 -0.20 1.12 16 21 N -0.51 -6.10 10.36 -13.26 -0.14 -6.24 16 22 C 0.38 5.35 8.24 -16.89 -0.14 5.21 16 23 F -0.09 -1.44 16.86 2.25 0.04 -1.40 16 24 C 0.11 1.59 6.50 -3.60 -0.02 1.57 16 25 C 0.05 0.85 5.16 -3.70 -0.02 0.84 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 28 H 0.03 0.63 7.23 -51.93 -0.38 0.25 16 29 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 30 H 0.05 1.13 7.09 -51.93 -0.37 0.76 16 31 H 0.09 1.48 7.06 -51.93 -0.37 1.11 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.16 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.18 0.56 8.06 -52.48 -0.42 0.13 16 35 H 0.07 0.91 6.27 -51.93 -0.33 0.58 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.11 6.63 -51.93 -0.34 0.77 16 38 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -33.24 324.15 -6.79 -40.03 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.18 Total: -1.79 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.98 Total: 7.36 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -1.02 Total: -53.95 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.65 Total: 16.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.24 -6.79 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.623 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds