Wall clock time and date at job start Fri Apr 10 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99935 * 2 1 4 4 H 1.48506 * 109.47474 * 269.99934 * 3 2 1 5 5 H 1.48499 * 109.47578 * 30.00328 * 3 2 1 6 6 H 1.48503 * 109.47153 * 150.00280 * 3 2 1 7 7 C 1.37877 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00366 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99643 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46664 * 184.89358 * 9 7 2 11 11 C 1.46898 * 111.00383 * 64.60055 * 10 9 7 12 12 C 1.53237 * 109.34151 * 172.74573 * 11 10 9 13 13 N 1.47082 * 108.52466 * 53.82451 * 12 11 10 14 14 C 1.34777 * 120.88199 * 128.79289 * 13 12 11 15 15 O 1.21593 * 119.99840 * 0.02562 * 14 13 12 16 16 C 1.47532 * 119.99971 * 180.02562 * 14 13 12 17 17 C 1.40321 * 120.60255 * 269.99828 * 16 14 13 18 18 F 1.35106 * 120.87667 * 359.97438 * 17 16 14 19 19 C 1.38741 * 118.24794 * 180.02562 * 17 16 14 20 20 C 1.38132 * 119.34707 * 0.02562 * 19 17 16 21 21 N 1.31996 * 121.18310 * 0.02562 * 20 19 17 22 22 C 1.31931 * 121.92487 * 359.65620 * 21 20 19 23 23 F 1.35104 * 119.74944 * 180.31479 * 22 21 20 24 24 C 1.47082 * 118.23658 * 308.81955 * 13 12 11 25 25 C 1.46898 * 111.00159 * 300.29302 * 10 9 7 26 26 H 0.97003 * 120.00307 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47058 * 64.89254 * 9 7 2 28 28 H 1.08999 * 109.47020 * 304.88961 * 9 7 2 29 29 H 1.08997 * 109.49347 * 52.78260 * 11 10 9 30 30 H 1.09004 * 109.48724 * 292.70165 * 11 10 9 31 31 H 1.08995 * 109.63257 * 173.53803 * 12 11 10 32 32 H 1.09000 * 109.63099 * 294.11783 * 12 11 10 33 33 H 1.08003 * 120.32849 * 180.02562 * 19 17 16 34 34 H 1.08003 * 119.41050 * 180.02562 * 20 19 17 35 35 H 1.08998 * 109.62689 * 170.88883 * 24 13 12 36 36 H 1.08990 * 109.62715 * 291.47139 * 24 13 12 37 37 H 1.08992 * 109.49398 * 67.29765 * 25 10 9 38 38 H 1.09001 * 109.49435 * 307.21627 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0010 -2.5740 -0.1198 11 6 3.6214 -3.1580 -1.4131 12 6 4.3000 -4.5226 -1.5726 13 7 3.9742 -5.3465 -0.3985 14 6 3.4819 -6.5928 -0.5431 15 8 3.3020 -7.0502 -1.6553 16 6 3.1614 -7.4021 0.6481 17 6 4.1294 -8.2377 1.2256 18 9 5.3735 -8.3205 0.7052 19 6 3.7750 -8.9776 2.3445 20 6 2.4937 -8.8700 2.8493 21 7 1.6016 -8.0768 2.2860 22 6 1.8881 -7.3473 1.2247 23 9 0.9428 -6.5454 0.6873 24 6 4.1994 -4.7741 0.9375 25 6 3.5247 -3.3995 0.9981 26 1 -0.4851 0.8400 -0.0004 27 1 3.8752 -0.7582 0.9294 28 1 3.8745 -0.6061 -0.8441 29 1 3.9406 -2.4966 -2.2185 30 1 2.5392 -3.2831 -1.4520 31 1 3.9333 -5.0107 -2.4755 32 1 5.3798 -4.3892 -1.6379 33 1 4.4938 -9.6313 2.8162 34 1 2.2169 -9.4452 3.7205 35 1 3.7660 -5.4283 1.6939 36 1 5.2694 -4.6648 1.1133 37 1 2.4440 -3.5213 0.9256 38 1 3.7738 -2.9134 1.9413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827479718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:42 Heat of formation + Delta-G solvation = -85.242697 kcal Electronic energy + Delta-G solvation = -26381.440652 eV Core-core repulsion = 22280.822188 eV Total energy + Delta-G solvation = -4100.618464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.48449 -50.43252 -41.78580 -40.66628 -39.16331 -36.20094 -34.45923 -33.72692 -32.71963 -31.97938 -30.43201 -27.59343 -26.03597 -24.84191 -24.69266 -23.86455 -22.27284 -20.63922 -19.83296 -19.37842 -19.07331 -18.67456 -17.91123 -17.35948 -17.32557 -16.80271 -16.55826 -16.24562 -16.14986 -15.97744 -15.94691 -15.84370 -15.16351 -14.99783 -14.59544 -14.48189 -14.22939 -14.00649 -13.90537 -13.46896 -13.11661 -13.09074 -12.60198 -12.32143 -12.25437 -12.07243 -11.86718 -11.75509 -11.62290 -11.10775 -10.91486 -10.81163 -10.39158 -10.00694 -9.13362 -8.33337 -6.40526 -0.68617 -0.43361 1.01898 1.36314 1.37341 1.49584 1.63080 2.03487 2.15655 2.32635 2.54918 2.91100 3.02086 3.14037 3.28906 3.47477 3.79343 3.93757 4.00246 4.13100 4.24141 4.28516 4.34646 4.41398 4.46586 4.60521 4.63361 4.75034 4.92263 4.98964 5.02601 5.09199 5.21683 5.24762 5.44149 5.91454 6.07987 6.22705 6.25950 6.28798 6.66605 6.67257 7.26925 8.83383 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.004075 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.311181 B = 6868.688831 C = 7401.466208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.555 4.555 8 H 0.025 0.975 9 C 0.161 3.839 10 N -0.519 5.519 11 C 0.051 3.949 12 C 0.123 3.877 13 N -0.595 5.595 14 C 0.564 3.436 15 O -0.565 6.565 16 C -0.252 4.252 17 C 0.197 3.803 18 F -0.111 7.111 19 C -0.182 4.182 20 C 0.191 3.809 21 N -0.531 5.531 22 C 0.348 3.652 23 F -0.119 7.119 24 C 0.121 3.879 25 C 0.049 3.951 26 H 0.266 0.734 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.092 0.908 30 H 0.004 0.996 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.215 0.785 34 H 0.237 0.763 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.007 0.993 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.651 -18.356 8.593 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.593 4.593 8 H 0.044 0.956 9 C 0.034 3.966 10 N -0.242 5.242 11 C -0.078 4.078 12 C 0.002 3.998 13 N -0.326 5.326 14 C 0.350 3.650 15 O -0.445 6.445 16 C -0.260 4.260 17 C 0.170 3.830 18 F -0.090 7.090 19 C -0.202 4.202 20 C 0.035 3.965 21 N -0.247 5.247 22 C 0.195 3.805 23 F -0.098 7.098 24 C -0.001 4.001 25 C -0.080 4.080 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.022 0.978 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.232 0.768 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.025 0.975 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.130 -18.360 8.312 24.053 hybrid contribution -0.953 1.270 -1.083 1.922 sum 12.177 -17.090 7.229 22.194 Atomic orbital electron populations 1.70108 1.08665 1.28257 1.51984 1.26004 0.95502 1.03744 0.93634 0.85599 0.79626 0.77776 0.79226 1.19274 1.21275 1.16145 1.21903 0.92985 0.92924 1.51517 0.95631 1.20090 0.91486 0.87340 0.97685 1.62474 1.57370 1.02850 1.01542 1.22277 0.96695 0.95383 0.93440 1.21865 1.01501 0.88780 0.87695 1.48285 1.61555 1.13231 1.09533 1.18035 0.77003 0.81879 0.88089 1.90775 1.54646 1.72039 1.26999 1.20560 0.96126 1.07298 1.02056 1.17858 0.78724 0.93919 0.92499 1.91618 1.37298 1.94228 1.85805 1.22747 1.00687 1.01830 0.94981 1.23657 0.86347 0.89516 0.96966 1.67272 1.39110 1.09198 1.09112 1.17974 0.82842 0.89436 0.90271 1.91688 1.64167 1.70014 1.83910 1.22028 1.02736 0.93151 0.82180 1.22291 0.96329 0.93401 0.96022 0.92531 0.94174 0.94537 0.88933 0.97777 0.89668 0.87707 0.76844 0.74650 0.89503 0.87287 0.97491 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 2 C 0.01 0.52 5.47 84.65 0.46 0.99 16 3 Si 0.95 43.08 27.37 68.60 1.88 44.96 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -9.70 6.69 99.48 0.67 -9.04 16 7 C -0.55 -31.31 8.32 25.60 0.21 -31.10 16 8 H 0.03 1.66 6.12 -2.91 -0.02 1.64 16 9 C 0.16 7.31 4.18 85.56 0.36 7.67 16 10 N -0.52 -20.21 4.83 -899.84 -4.35 -24.56 16 11 C 0.05 1.97 5.24 86.38 0.45 2.43 16 12 C 0.12 3.96 6.60 86.35 0.57 4.53 16 13 N -0.59 -19.30 3.01 -821.70 -2.47 -21.77 16 14 C 0.56 19.47 6.53 86.69 0.57 20.03 16 15 O -0.57 -23.28 16.56 -4.01 -0.07 -23.35 16 16 C -0.25 -6.96 3.71 -19.92 -0.07 -7.03 16 17 C 0.20 3.74 7.37 22.90 0.17 3.90 16 18 F -0.11 -2.23 16.93 44.97 0.76 -1.47 16 19 C -0.18 -1.64 10.09 22.36 0.23 -1.41 16 20 C 0.19 1.97 11.16 84.64 0.94 2.92 16 21 N -0.53 -11.93 10.36 -195.85 -2.03 -13.96 16 22 C 0.35 10.18 8.24 85.08 0.70 10.88 16 23 F -0.12 -4.45 16.86 44.97 0.76 -3.69 16 24 C 0.12 3.39 6.50 86.35 0.56 3.96 16 25 C 0.05 1.78 5.16 86.38 0.45 2.23 16 26 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 27 H 0.04 1.76 7.54 -2.39 -0.02 1.75 16 28 H 0.04 1.61 7.23 -2.39 -0.02 1.59 16 29 H 0.09 3.31 8.06 -2.39 -0.02 3.29 16 30 H 0.00 0.18 7.09 -2.38 -0.02 0.17 16 31 H 0.08 2.86 7.06 -2.39 -0.02 2.85 16 32 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.21 -0.15 8.06 -2.91 -0.02 -0.17 16 34 H 0.24 -0.10 8.06 -2.91 -0.02 -0.12 16 35 H 0.09 2.17 6.27 -2.39 -0.01 2.16 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.01 0.31 6.63 -2.39 -0.02 0.29 16 38 H 0.09 3.18 8.11 -2.39 -0.02 3.16 16 Total: -1.00 -80.39 324.15 1.45 -78.94 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.07 Total: 4.51 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 5.60 Total: 20.00 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -8.55 Total: -119.90 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.07 Total: -23.35 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.52 Total: -5.16 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Total: -80.39 1.45 -78.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.302 kcal (2) G-P(sol) polarization free energy of solvation -80.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds