Wall clock time and date at job start Fri Apr 10 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99853 * 2 1 4 4 H 1.48501 * 109.46826 * 269.99633 * 3 2 1 5 5 H 1.48496 * 109.47347 * 29.99975 * 3 2 1 6 6 H 1.48506 * 109.46996 * 150.00187 * 3 2 1 7 7 C 1.37877 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00312 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99606 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00035 * 170.00088 * 10 9 7 12 12 C 1.53239 * 109.34262 * 187.25355 * 11 10 9 13 13 N 1.47082 * 108.52281 * 306.17242 * 12 11 10 14 14 C 1.34773 * 120.88348 * 231.18786 * 13 12 11 15 15 O 1.21553 * 119.99919 * 359.97438 * 14 13 12 16 16 C 1.47849 * 120.00070 * 179.72020 * 14 13 12 17 17 C 1.40128 * 120.95677 * 89.99798 * 16 14 13 18 18 F 1.35095 * 120.52135 * 359.97438 * 17 16 14 19 19 C 1.38432 * 118.95304 * 179.73391 * 17 16 14 20 20 N 1.31761 * 120.93269 * 0.54643 * 19 17 16 21 21 C 1.31764 * 122.14352 * 359.72450 * 20 19 17 22 22 C 1.38436 * 120.92870 * 359.97438 * 21 20 19 23 23 F 1.35100 * 120.51852 * 179.97438 * 22 21 20 24 24 C 1.47079 * 118.23394 * 51.45287 * 13 12 11 25 25 C 1.46903 * 110.99964 * 294.30297 * 10 9 7 26 26 H 0.97000 * 119.99987 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47376 * 60.00427 * 9 7 2 28 28 H 1.09002 * 109.47559 * 300.00195 * 9 7 2 29 29 H 1.08998 * 109.49311 * 67.29545 * 11 10 9 30 30 H 1.08997 * 109.49431 * 307.21382 * 11 10 9 31 31 H 1.08998 * 109.63149 * 186.46310 * 12 11 10 32 32 H 1.08996 * 109.62760 * 65.87689 * 12 11 10 33 33 H 1.08001 * 119.52847 * 180.27424 * 19 17 16 34 34 H 1.08007 * 119.53872 * 180.02562 * 21 20 19 35 35 H 1.08992 * 109.63202 * 68.25742 * 24 13 12 36 36 H 1.09007 * 109.62508 * 188.83557 * 24 13 12 37 37 H 1.09000 * 109.49258 * 292.70430 * 25 10 9 38 38 H 1.09002 * 109.49178 * 52.79027 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 5.4500 -2.6251 -0.2386 12 6 5.8897 -4.0829 -0.4113 13 7 5.4266 -4.8518 0.7539 14 6 6.2769 -5.6314 1.4507 15 8 7.4437 -5.7063 1.1184 16 6 5.7917 -6.3912 2.6226 17 6 5.2875 -7.6909 2.4806 18 9 5.2344 -8.2772 1.2647 19 6 4.8495 -8.3665 3.6067 20 7 4.8921 -7.8002 4.7956 21 6 5.3529 -6.5787 4.9742 22 6 5.8179 -5.8304 3.9064 23 9 6.2881 -4.5786 4.0989 24 6 4.0095 -4.7519 1.1349 25 6 3.6451 -3.2632 1.2503 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8905 29 1 5.9727 -2.1858 0.6109 30 1 5.6878 -2.0641 -1.1423 31 1 6.9767 -4.1325 -0.4740 32 1 5.4485 -4.4933 -1.3195 33 1 4.4633 -9.3703 3.5086 34 1 5.3689 -6.1556 5.9679 35 1 3.3911 -5.2253 0.3724 36 1 3.8529 -5.2440 2.0948 37 1 4.1930 -2.8149 2.0791 38 1 2.5739 -3.1648 1.4263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827479933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:44 Heat of formation + Delta-G solvation = -62.491890 kcal Electronic energy + Delta-G solvation = -26131.933559 eV Core-core repulsion = 22032.301644 eV Total energy + Delta-G solvation = -4099.631915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.55071 -49.51181 -40.82482 -39.73438 -37.77144 -34.71235 -33.18433 -32.38280 -31.25365 -30.92451 -28.89919 -26.42823 -25.00346 -24.05683 -23.52553 -22.03157 -20.91458 -19.52053 -18.62504 -18.57084 -17.87481 -17.04713 -16.85381 -16.37866 -16.27250 -15.83233 -15.81600 -15.11646 -14.75540 -14.67854 -14.49966 -14.19169 -14.14513 -13.77792 -13.69769 -13.63932 -13.13079 -12.55701 -12.47118 -12.36675 -11.67247 -11.33535 -11.27504 -10.93915 -10.80249 -10.66178 -10.43267 -10.32868 -10.00261 -9.93975 -9.46857 -9.41937 -8.78338 -8.65738 -7.58184 -6.14457 -4.12984 0.11318 0.17938 2.11314 2.62591 2.86199 3.10136 3.22270 3.30303 3.31680 3.48787 3.76132 3.86346 4.15518 4.33860 4.42943 4.48915 4.89069 4.92518 5.01566 5.13553 5.20251 5.21262 5.29225 5.44192 5.54771 5.60805 5.79471 5.89666 6.04525 6.22220 6.26504 6.38895 6.70722 6.83127 7.06586 7.12832 7.44577 7.70328 7.77500 7.84735 8.52712 8.91928 9.46765 10.98255 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.003776 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.174060 B = 7413.009632 C = 7726.139353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.514 4.514 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.038 3.962 12 C 0.118 3.882 13 N -0.591 5.591 14 C 0.563 3.437 15 O -0.524 6.524 16 C -0.146 4.146 17 C 0.111 3.889 18 F -0.109 7.109 19 C 0.069 3.931 20 N -0.419 5.419 21 C 0.070 3.930 22 C 0.112 3.888 23 F -0.108 7.108 24 C 0.108 3.892 25 C 0.051 3.949 26 H 0.265 0.735 27 H -0.010 1.010 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.184 0.816 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 -14.756 7.693 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.092 4.092 12 C -0.003 4.003 13 N -0.323 5.323 14 C 0.348 3.652 15 O -0.400 6.400 16 C -0.159 4.159 17 C 0.089 3.911 18 F -0.088 7.088 19 C -0.090 4.090 20 N -0.126 5.126 21 C -0.089 4.089 22 C 0.090 3.910 23 F -0.086 7.086 24 C -0.014 4.014 25 C -0.078 4.078 26 H 0.075 0.925 27 H 0.008 0.992 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.201 0.799 34 H 0.201 0.799 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.562 -15.325 7.784 20.174 hybrid contribution 1.060 2.063 -0.293 2.338 sum 11.622 -13.262 7.491 19.159 Atomic orbital electron populations 1.69884 1.06119 1.26985 1.50624 1.24883 0.94725 0.98857 0.94659 0.86880 0.80280 0.84030 0.78675 1.20060 1.21121 1.19326 1.20983 0.88507 0.94765 1.50930 0.90057 1.20190 0.97237 0.83545 0.95356 1.61909 1.10057 1.19489 1.33582 1.22472 0.90448 0.94980 1.01279 1.21880 1.00519 0.90896 0.87036 1.48208 1.10229 1.43941 1.29883 1.17664 0.85795 0.79723 0.81993 1.90820 1.16453 1.64380 1.68396 1.20619 1.04049 0.95783 0.95409 1.18618 0.99431 0.90377 0.82708 1.91612 1.93524 1.82885 1.40731 1.23033 0.98810 1.01411 0.85726 1.67655 1.11431 1.09832 1.23657 1.23047 0.96631 0.90125 0.99086 1.18646 0.97975 0.81823 0.92592 1.91629 1.85160 1.36466 1.95375 1.22178 0.79913 0.98839 1.00500 1.22437 1.03289 0.90996 0.91070 0.92545 0.99225 0.95471 0.95204 0.89562 0.88953 0.90027 0.79920 0.79891 0.89570 0.90941 0.95350 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.51 -13.83 8.96 -34.44 -0.31 -14.14 16 8 H 0.08 2.36 7.37 -52.49 -0.39 1.97 16 9 C 0.16 3.74 3.79 -4.97 -0.02 3.72 16 10 N -0.53 -10.22 4.62 -235.46 -1.09 -11.31 16 11 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 12 C 0.12 1.73 6.60 -3.60 -0.02 1.71 16 13 N -0.59 -8.81 3.00 -173.29 -0.52 -9.33 16 14 C 0.56 8.63 6.63 -12.33 -0.08 8.55 16 15 O -0.52 -9.46 16.56 5.32 0.09 -9.37 16 16 C -0.15 -1.82 3.72 -104.55 -0.39 -2.21 16 17 C 0.11 1.17 7.34 -38.80 -0.28 0.89 16 18 F -0.11 -1.24 16.91 2.25 0.04 -1.20 16 19 C 0.07 0.57 11.16 -17.51 -0.20 0.37 16 20 N -0.42 -3.75 10.32 -13.18 -0.14 -3.89 16 21 C 0.07 0.60 11.16 -17.51 -0.20 0.41 16 22 C 0.11 1.25 7.19 -38.80 -0.28 0.97 16 23 F -0.11 -1.36 16.92 2.25 0.04 -1.32 16 24 C 0.11 1.55 6.53 -3.36 -0.02 1.52 16 25 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H -0.01 -0.23 7.18 -51.93 -0.37 -0.61 16 28 H 0.03 0.63 7.40 -51.93 -0.38 0.24 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.31 7.99 -51.93 -0.41 0.90 16 31 H 0.09 1.32 7.06 -51.93 -0.37 0.95 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.90 6.28 -51.92 -0.33 0.57 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.11 2.04 6.67 -51.93 -0.35 1.70 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -31.97 327.10 -6.78 -38.75 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.30 Total: -2.75 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.94 Total: 5.12 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.97 Total: -50.29 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.97 -6.78 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.738 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds