Wall clock time and date at job start Fri Apr 10 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99853 * 2 1 4 4 H 1.48501 * 109.46826 * 269.99633 * 3 2 1 5 5 H 1.48496 * 109.47347 * 29.99975 * 3 2 1 6 6 H 1.48506 * 109.46996 * 150.00187 * 3 2 1 7 7 C 1.37877 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00312 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99606 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00035 * 170.00088 * 10 9 7 12 12 C 1.53239 * 109.34262 * 187.25355 * 11 10 9 13 13 N 1.47082 * 108.52281 * 306.17242 * 12 11 10 14 14 C 1.34773 * 120.88348 * 231.18786 * 13 12 11 15 15 O 1.21553 * 119.99919 * 359.97438 * 14 13 12 16 16 C 1.47849 * 120.00070 * 179.72020 * 14 13 12 17 17 C 1.40128 * 120.95677 * 89.99798 * 16 14 13 18 18 F 1.35095 * 120.52135 * 359.97438 * 17 16 14 19 19 C 1.38432 * 118.95304 * 179.73391 * 17 16 14 20 20 N 1.31761 * 120.93269 * 0.54643 * 19 17 16 21 21 C 1.31764 * 122.14352 * 359.72450 * 20 19 17 22 22 C 1.38436 * 120.92870 * 359.97438 * 21 20 19 23 23 F 1.35100 * 120.51852 * 179.97438 * 22 21 20 24 24 C 1.47079 * 118.23394 * 51.45287 * 13 12 11 25 25 C 1.46903 * 110.99964 * 294.30297 * 10 9 7 26 26 H 0.97000 * 119.99987 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47376 * 60.00427 * 9 7 2 28 28 H 1.09002 * 109.47559 * 300.00195 * 9 7 2 29 29 H 1.08998 * 109.49311 * 67.29545 * 11 10 9 30 30 H 1.08997 * 109.49431 * 307.21382 * 11 10 9 31 31 H 1.08998 * 109.63149 * 186.46310 * 12 11 10 32 32 H 1.08996 * 109.62760 * 65.87689 * 12 11 10 33 33 H 1.08001 * 119.52847 * 180.27424 * 19 17 16 34 34 H 1.08007 * 119.53872 * 180.02562 * 21 20 19 35 35 H 1.08992 * 109.63202 * 68.25742 * 24 13 12 36 36 H 1.09007 * 109.62508 * 188.83557 * 24 13 12 37 37 H 1.09000 * 109.49258 * 292.70430 * 25 10 9 38 38 H 1.09002 * 109.49178 * 52.79027 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 5.4500 -2.6251 -0.2386 12 6 5.8897 -4.0829 -0.4113 13 7 5.4266 -4.8518 0.7539 14 6 6.2769 -5.6314 1.4507 15 8 7.4437 -5.7063 1.1184 16 6 5.7917 -6.3912 2.6226 17 6 5.2875 -7.6909 2.4806 18 9 5.2344 -8.2772 1.2647 19 6 4.8495 -8.3665 3.6067 20 7 4.8921 -7.8002 4.7956 21 6 5.3529 -6.5787 4.9742 22 6 5.8179 -5.8304 3.9064 23 9 6.2881 -4.5786 4.0989 24 6 4.0095 -4.7519 1.1349 25 6 3.6451 -3.2632 1.2503 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8905 29 1 5.9727 -2.1858 0.6109 30 1 5.6878 -2.0641 -1.1423 31 1 6.9767 -4.1325 -0.4740 32 1 5.4485 -4.4933 -1.3195 33 1 4.4633 -9.3703 3.5086 34 1 5.3689 -6.1556 5.9679 35 1 3.3911 -5.2253 0.3724 36 1 3.8529 -5.2440 2.0948 37 1 4.1930 -2.8149 2.0791 38 1 2.5739 -3.1648 1.4263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827479933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:44 Heat of formation + Delta-G solvation = -85.055768 kcal Electronic energy + Delta-G solvation = -26132.912002 eV Core-core repulsion = 22032.301644 eV Total energy + Delta-G solvation = -4100.610358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.40019 -50.36442 -41.82596 -40.72339 -39.16398 -36.18721 -34.58146 -33.91108 -32.19086 -31.97836 -30.58756 -27.85523 -26.13871 -24.85796 -24.81240 -23.55974 -22.38840 -20.70438 -19.48246 -19.39777 -19.02874 -18.90532 -17.99047 -17.26979 -17.20610 -16.75385 -16.68764 -16.57121 -16.29650 -16.13661 -15.74296 -15.50048 -15.30267 -14.88026 -14.82574 -14.51936 -14.41481 -14.39417 -13.77439 -13.37984 -13.26329 -12.97045 -12.65866 -12.43323 -12.34080 -12.09527 -11.88511 -11.77269 -11.46278 -11.17974 -10.95161 -10.78216 -10.19580 -10.06980 -9.16051 -8.28537 -6.31842 -0.72570 -0.54212 0.96160 1.35092 1.36480 1.45802 1.53224 2.12395 2.30219 2.33612 2.71427 2.77195 3.00682 3.08086 3.14854 3.40232 3.65740 3.74370 3.87024 4.02920 4.11405 4.15777 4.19857 4.27560 4.38742 4.57344 4.58577 4.72837 4.74747 4.84849 4.92090 5.02402 5.17160 5.20059 5.49901 5.83027 6.00408 6.21272 6.35954 6.54933 6.58911 6.74200 7.31909 8.87343 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.003776 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.174060 B = 7413.009632 C = 7726.139353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.515 4.515 8 H 0.046 0.954 9 C 0.172 3.828 10 N -0.537 5.537 11 C 0.041 3.959 12 C 0.122 3.878 13 N -0.593 5.593 14 C 0.563 3.437 15 O -0.557 6.557 16 C -0.165 4.165 17 C 0.103 3.897 18 F -0.117 7.117 19 C 0.091 3.909 20 N -0.423 5.423 21 C 0.089 3.911 22 C 0.096 3.904 23 F -0.122 7.122 24 C 0.121 3.879 25 C 0.055 3.945 26 H 0.267 0.733 27 H -0.014 1.014 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.219 0.781 34 H 0.215 0.785 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.024 0.976 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.668 -15.532 8.617 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.045 3.955 10 N -0.261 5.261 11 C -0.088 4.088 12 C 0.000 4.000 13 N -0.324 5.324 14 C 0.350 3.650 15 O -0.436 6.436 16 C -0.178 4.178 17 C 0.080 3.920 18 F -0.095 7.095 19 C -0.068 4.068 20 N -0.130 5.130 21 C -0.070 4.070 22 C 0.074 3.926 23 F -0.100 7.100 24 C -0.002 4.002 25 C -0.074 4.074 26 H 0.076 0.924 27 H 0.003 0.997 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.231 0.769 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.618 -16.121 8.711 21.696 hybrid contribution 0.698 2.183 -0.550 2.357 sum 12.316 -13.937 8.161 20.311 Atomic orbital electron populations 1.70028 1.07971 1.28068 1.52397 1.25741 0.95488 1.02786 0.94411 0.85807 0.79266 0.79190 0.79209 1.19020 1.20914 1.17921 1.21202 0.90658 0.93472 1.49971 0.93571 1.19955 0.94610 0.85761 0.95206 1.61820 1.12241 1.17467 1.34604 1.22523 0.88149 0.96434 1.01683 1.21857 1.00870 0.89799 0.87467 1.48282 1.10353 1.43911 1.29900 1.18057 0.85260 0.79385 0.82342 1.90791 1.17791 1.65558 1.69505 1.20577 1.05728 0.96635 0.94827 1.18771 1.00177 0.89867 0.83179 1.91595 1.93677 1.82884 1.41328 1.23579 0.96505 1.02213 0.84482 1.67815 1.11598 1.09841 1.23748 1.23509 0.94376 0.89532 0.99538 1.18848 0.99260 0.81762 0.92769 1.91593 1.85592 1.37406 1.95423 1.22060 0.79693 0.96480 1.01918 1.22362 1.01780 0.93041 0.90257 0.92423 0.99663 0.94868 0.95656 0.88192 0.88438 0.89043 0.76426 0.76881 0.89097 0.88796 0.95743 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.96 21.45 0.30 -56.73 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.94 42.70 27.47 68.60 1.88 44.58 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.51 -28.23 8.96 25.60 0.23 -28.00 16 8 H 0.05 2.79 7.37 -2.91 -0.02 2.77 16 9 C 0.17 7.82 3.79 85.56 0.32 8.15 16 10 N -0.54 -20.71 4.62 -898.87 -4.15 -24.86 16 11 C 0.04 1.29 5.62 86.38 0.49 1.77 16 12 C 0.12 3.44 6.60 86.35 0.57 4.01 16 13 N -0.59 -17.24 3.00 -820.45 -2.46 -19.70 16 14 C 0.56 16.93 6.63 86.79 0.58 17.50 16 15 O -0.56 -20.07 16.56 -3.88 -0.06 -20.14 16 16 C -0.17 -3.93 3.72 -19.82 -0.07 -4.00 16 17 C 0.10 1.96 7.34 22.78 0.17 2.13 16 18 F -0.12 -2.47 16.91 44.97 0.76 -1.71 16 19 C 0.09 1.20 11.16 84.75 0.95 2.15 16 20 N -0.42 -6.21 10.32 -195.62 -2.02 -8.22 16 21 C 0.09 1.29 11.16 84.75 0.95 2.23 16 22 C 0.10 1.99 7.19 22.77 0.16 2.16 16 23 F -0.12 -2.98 16.92 44.97 0.76 -2.22 16 24 C 0.12 3.37 6.53 86.50 0.57 3.93 16 25 C 0.05 1.92 5.47 86.54 0.47 2.40 16 26 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 27 H -0.01 -0.66 7.18 -2.39 -0.02 -0.68 16 28 H 0.03 1.48 7.40 -2.39 -0.02 1.46 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 2.87 7.99 -2.39 -0.02 2.85 16 31 H 0.10 2.70 7.06 -2.39 -0.02 2.68 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.22 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.09 2.22 6.28 -2.38 -0.01 2.21 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 3.31 6.67 -2.39 -0.02 3.29 16 Total: -1.00 -70.08 327.10 1.89 -68.19 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.05 Total: 5.17 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 5.84 Total: 15.65 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -8.34 Total: -109.52 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 1.52 Total: -3.93 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Total: -70.08 1.89 -68.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.863 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds