Wall clock time and date at job start Fri Apr 10 2020 22:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00346 * 2 1 4 4 H 1.48496 * 109.47078 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.46976 * 30.00243 * 3 2 1 6 6 H 1.48502 * 109.47112 * 149.99686 * 3 2 1 7 7 C 1.37881 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99712 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00195 * 180.02562 * 7 2 1 10 10 N 1.46892 * 109.47297 * 175.12491 * 9 7 2 11 11 C 1.46898 * 111.00149 * 295.19064 * 10 9 7 12 12 C 1.53237 * 109.34032 * 187.25468 * 11 10 9 13 13 N 1.47086 * 108.52204 * 306.16935 * 12 11 10 14 14 C 1.34776 * 120.88079 * 231.19015 * 13 12 11 15 15 O 1.21527 * 120.00157 * 5.93522 * 14 13 12 16 16 C 1.48003 * 119.99947 * 185.93851 * 14 13 12 17 17 C 1.39985 * 120.92641 * 53.15369 * 16 14 13 18 18 C 1.37939 * 119.09090 * 180.31822 * 17 16 14 19 19 N 1.31924 * 121.01509 * 359.66398 * 18 17 16 20 20 C 1.31859 * 122.06180 * 0.02562 * 19 18 17 21 21 F 1.35103 * 119.60980 * 180.02562 * 20 19 18 22 22 C 1.38879 * 120.78343 * 0.02562 * 20 19 18 23 23 F 1.35098 * 120.55050 * 179.97438 * 22 20 19 24 24 C 1.47080 * 118.23588 * 51.45863 * 13 12 11 25 25 C 1.46904 * 111.00000 * 59.49367 * 10 9 7 26 26 H 0.97002 * 119.99489 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47097 * 55.12088 * 9 7 2 28 28 H 1.08999 * 109.46691 * 295.12591 * 9 7 2 29 29 H 1.09006 * 109.49122 * 67.29543 * 11 10 9 30 30 H 1.09003 * 109.51561 * 307.22752 * 11 10 9 31 31 H 1.09002 * 109.62787 * 186.46478 * 12 11 10 32 32 H 1.08991 * 109.63165 * 65.88059 * 12 11 10 33 33 H 1.08000 * 120.45760 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.49102 * 179.68385 * 18 17 16 35 35 H 1.09002 * 109.62571 * 68.25399 * 24 13 12 36 36 H 1.08994 * 109.62767 * 188.83513 * 24 13 12 37 37 H 1.08998 * 109.49239 * 292.70388 * 25 10 9 38 38 H 1.09002 * 109.49242 * 52.78901 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 0.0000 10 7 4.0010 -2.5743 0.1170 11 6 3.6256 -3.1581 1.4117 12 6 4.3043 -4.5229 1.5688 13 7 3.9742 -5.3468 0.3960 14 6 3.4823 -6.5931 0.5423 15 8 3.2047 -7.0106 1.6493 16 6 3.2804 -7.4531 -0.6451 17 6 4.3222 -7.6852 -1.5509 18 6 4.0902 -8.4879 -2.6485 19 7 2.9091 -9.0402 -2.8492 20 6 1.9001 -8.8555 -2.0208 21 9 0.7116 -9.4458 -2.2743 22 6 2.0445 -8.0613 -0.8906 23 9 1.0074 -7.8748 -0.0452 24 6 4.2006 -4.7768 -0.9408 25 6 3.5204 -3.3997 -0.9992 26 1 -0.4849 0.8401 -0.0004 27 1 3.8745 -0.6072 0.8437 28 1 3.8751 -0.7573 -0.9300 29 1 2.5435 -3.2829 1.4543 30 1 3.9475 -2.4970 2.2163 31 1 3.9405 -5.0109 2.4731 32 1 5.3843 -4.3899 1.6305 33 1 5.2926 -7.2375 -1.3955 34 1 4.8879 -8.6671 -3.3541 35 1 5.2710 -4.6676 -1.1158 36 1 3.7682 -5.4325 -1.6965 37 1 2.4399 -3.5211 -0.9229 38 1 3.7665 -2.9137 -1.9433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827483461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:46 Heat of formation + Delta-G solvation = -57.966682 kcal Electronic energy + Delta-G solvation = -25990.501687 eV Core-core repulsion = 21891.066000 eV Total energy + Delta-G solvation = -4099.435687 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.82566 -48.92118 -40.96053 -39.58714 -37.72939 -34.78159 -33.30554 -32.32099 -31.16155 -30.78948 -28.82865 -26.25467 -24.95507 -24.14584 -23.31052 -22.27603 -20.89562 -19.46839 -18.59226 -18.10604 -17.80207 -17.15692 -16.92704 -16.68318 -16.11083 -15.40981 -15.24029 -15.14351 -14.81374 -14.66943 -14.63496 -14.19858 -13.91625 -13.58072 -13.49665 -13.45123 -12.91620 -12.55041 -12.51984 -12.43876 -11.52720 -11.36443 -11.18742 -10.79225 -10.74931 -10.53914 -10.46923 -10.36383 -10.07648 -9.88754 -9.62418 -9.35596 -8.72393 -8.69310 -7.44075 -6.19696 -4.21681 0.12241 0.21983 2.26681 2.61365 2.90147 2.98077 3.20221 3.28787 3.30192 3.55550 3.83636 4.04552 4.15844 4.30173 4.63902 4.77048 4.83149 5.05020 5.11671 5.19709 5.20719 5.27047 5.39327 5.49887 5.66793 5.77795 5.87900 5.96462 6.18818 6.45371 6.46474 6.59081 6.77570 6.91944 6.95882 7.19655 7.41081 7.81944 7.84437 7.87811 8.32301 8.81098 9.41654 10.93024 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.003720 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.840315 B = 7525.652459 C = 7924.283687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.154 3.846 10 N -0.532 5.532 11 C 0.046 3.954 12 C 0.117 3.883 13 N -0.592 5.592 14 C 0.559 3.441 15 O -0.520 6.520 16 C -0.082 4.082 17 C -0.124 4.124 18 C 0.126 3.874 19 N -0.476 5.476 20 C 0.287 3.713 21 F -0.096 7.096 22 C 0.075 3.925 23 F -0.101 7.101 24 C 0.105 3.895 25 C 0.046 3.954 26 H 0.265 0.735 27 H 0.033 0.967 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.184 0.816 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.871 -14.850 -4.687 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.091 0.909 9 C 0.027 3.973 10 N -0.256 5.256 11 C -0.083 4.083 12 C -0.005 4.005 13 N -0.325 5.325 14 C 0.345 3.655 15 O -0.397 6.397 16 C -0.094 4.094 17 C -0.145 4.145 18 C -0.030 4.030 19 N -0.190 5.190 20 C 0.131 3.869 21 F -0.075 7.075 22 C 0.051 3.949 23 F -0.079 7.079 24 C -0.018 4.018 25 C -0.083 4.083 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.180 0.820 34 H 0.201 0.799 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.852 -15.443 -4.786 20.047 hybrid contribution -1.058 1.423 0.686 1.901 sum 10.795 -14.020 -4.099 18.163 Atomic orbital electron populations 1.69931 1.06429 1.27156 1.49812 1.24984 0.94695 0.99288 0.93993 0.86789 0.80372 0.83502 0.78674 1.20139 1.21246 1.18760 1.21657 0.90564 0.94709 1.52659 0.90865 1.20223 0.94745 0.85143 0.97174 1.62436 1.58413 1.03925 1.00846 1.22290 0.99288 0.93347 0.93347 1.21951 1.00164 0.90756 0.87644 1.48096 1.62243 1.13041 1.09091 1.17792 0.78373 0.81850 0.87531 1.90836 1.50131 1.73264 1.25436 1.20496 0.92832 0.98755 0.97358 1.22387 0.99925 0.98878 0.93301 1.22599 0.92522 0.91888 0.95994 1.66989 1.00253 1.22758 1.29011 1.17991 0.83501 0.94339 0.91063 1.91700 1.40619 1.81448 1.93703 1.18377 0.86038 1.00110 0.90387 1.91649 1.54816 1.93127 1.68303 1.22269 1.01434 0.95586 0.82506 1.22363 0.98539 0.91338 0.96078 0.92547 0.94893 0.95490 0.93111 0.89988 0.88996 0.90627 0.82031 0.79889 0.90204 0.90388 0.93058 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 20.52 27.57 -169.99 -4.69 15.84 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.84 6.41 56.52 0.36 -5.48 16 7 C -0.56 -14.78 8.32 -34.44 -0.29 -15.06 16 8 H 0.07 2.15 6.12 -52.49 -0.32 1.83 16 9 C 0.15 3.39 4.20 -4.98 -0.02 3.37 16 10 N -0.53 -9.80 4.83 -235.47 -1.14 -10.94 16 11 C 0.05 0.82 5.25 -3.70 -0.02 0.80 16 12 C 0.12 1.68 6.61 -3.60 -0.02 1.66 16 13 N -0.59 -8.30 3.00 -173.23 -0.52 -8.82 16 14 C 0.56 8.34 7.01 -12.26 -0.09 8.26 16 15 O -0.52 -9.53 16.36 5.34 0.09 -9.45 16 16 C -0.08 -1.00 4.64 -104.61 -0.49 -1.49 16 17 C -0.12 -0.97 7.93 -39.04 -0.31 -1.28 16 18 C 0.13 0.90 11.16 -17.62 -0.20 0.70 16 19 N -0.48 -5.06 10.34 -13.59 -0.14 -5.20 16 20 C 0.29 3.55 8.42 -17.30 -0.15 3.40 16 21 F -0.10 -1.25 17.21 2.25 0.04 -1.21 16 22 C 0.08 1.01 7.33 -38.72 -0.28 0.73 16 23 F -0.10 -1.61 16.68 2.25 0.04 -1.57 16 24 C 0.10 1.27 5.74 -3.36 -0.02 1.25 16 25 C 0.05 0.77 5.17 -3.46 -0.02 0.75 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.74 6.79 -51.93 -0.35 0.39 16 28 H 0.03 0.59 7.81 -51.93 -0.41 0.19 16 29 H 0.05 1.07 7.11 -51.93 -0.37 0.70 16 30 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 31 H 0.09 1.37 7.04 -51.93 -0.37 1.00 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.16 0.80 7.76 -52.49 -0.41 0.39 16 34 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.81 5.53 -51.93 -0.29 0.52 16 37 H 0.05 1.03 6.62 -51.93 -0.34 0.69 16 38 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -32.67 321.41 -6.83 -39.50 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.13 Total: -2.09 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.99 Total: 5.03 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -1.02 Total: -50.90 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.69 Total: 15.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.67 -6.83 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.469 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds