Wall clock time and date at job start Fri Apr 10 2020 22:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00346 * 2 1 4 4 H 1.48496 * 109.47078 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.46976 * 30.00243 * 3 2 1 6 6 H 1.48502 * 109.47112 * 149.99686 * 3 2 1 7 7 C 1.37881 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99712 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00195 * 180.02562 * 7 2 1 10 10 N 1.46892 * 109.47297 * 175.12491 * 9 7 2 11 11 C 1.46898 * 111.00149 * 295.19064 * 10 9 7 12 12 C 1.53237 * 109.34032 * 187.25468 * 11 10 9 13 13 N 1.47086 * 108.52204 * 306.16935 * 12 11 10 14 14 C 1.34776 * 120.88079 * 231.19015 * 13 12 11 15 15 O 1.21527 * 120.00157 * 5.93522 * 14 13 12 16 16 C 1.48003 * 119.99947 * 185.93851 * 14 13 12 17 17 C 1.39985 * 120.92641 * 53.15369 * 16 14 13 18 18 C 1.37939 * 119.09090 * 180.31822 * 17 16 14 19 19 N 1.31924 * 121.01509 * 359.66398 * 18 17 16 20 20 C 1.31859 * 122.06180 * 0.02562 * 19 18 17 21 21 F 1.35103 * 119.60980 * 180.02562 * 20 19 18 22 22 C 1.38879 * 120.78343 * 0.02562 * 20 19 18 23 23 F 1.35098 * 120.55050 * 179.97438 * 22 20 19 24 24 C 1.47080 * 118.23588 * 51.45863 * 13 12 11 25 25 C 1.46904 * 111.00000 * 59.49367 * 10 9 7 26 26 H 0.97002 * 119.99489 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47097 * 55.12088 * 9 7 2 28 28 H 1.08999 * 109.46691 * 295.12591 * 9 7 2 29 29 H 1.09006 * 109.49122 * 67.29543 * 11 10 9 30 30 H 1.09003 * 109.51561 * 307.22752 * 11 10 9 31 31 H 1.09002 * 109.62787 * 186.46478 * 12 11 10 32 32 H 1.08991 * 109.63165 * 65.88059 * 12 11 10 33 33 H 1.08000 * 120.45760 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.49102 * 179.68385 * 18 17 16 35 35 H 1.09002 * 109.62571 * 68.25399 * 24 13 12 36 36 H 1.08994 * 109.62767 * 188.83513 * 24 13 12 37 37 H 1.08998 * 109.49239 * 292.70388 * 25 10 9 38 38 H 1.09002 * 109.49242 * 52.78901 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 0.0000 10 7 4.0010 -2.5743 0.1170 11 6 3.6256 -3.1581 1.4117 12 6 4.3043 -4.5229 1.5688 13 7 3.9742 -5.3468 0.3960 14 6 3.4823 -6.5931 0.5423 15 8 3.2047 -7.0106 1.6493 16 6 3.2804 -7.4531 -0.6451 17 6 4.3222 -7.6852 -1.5509 18 6 4.0902 -8.4879 -2.6485 19 7 2.9091 -9.0402 -2.8492 20 6 1.9001 -8.8555 -2.0208 21 9 0.7116 -9.4458 -2.2743 22 6 2.0445 -8.0613 -0.8906 23 9 1.0074 -7.8748 -0.0452 24 6 4.2006 -4.7768 -0.9408 25 6 3.5204 -3.3997 -0.9992 26 1 -0.4849 0.8401 -0.0004 27 1 3.8745 -0.6072 0.8437 28 1 3.8751 -0.7573 -0.9300 29 1 2.5435 -3.2829 1.4543 30 1 3.9475 -2.4970 2.2163 31 1 3.9405 -5.0109 2.4731 32 1 5.3843 -4.3899 1.6305 33 1 5.2926 -7.2375 -1.3955 34 1 4.8879 -8.6671 -3.3541 35 1 5.2710 -4.6676 -1.1158 36 1 3.7682 -5.4325 -1.6965 37 1 2.4399 -3.5211 -0.9229 38 1 3.7665 -2.9137 -1.9433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:46 Heat of formation + Delta-G solvation = -83.239652 kcal Electronic energy + Delta-G solvation = -25991.597605 eV Core-core repulsion = 21891.066000 eV Total energy + Delta-G solvation = -4100.531605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.83246 -49.94583 -41.94167 -40.61829 -39.11512 -36.20789 -34.56475 -34.00756 -32.10060 -31.87468 -30.46198 -27.69851 -26.15625 -25.02487 -24.50821 -23.82468 -22.25360 -20.73215 -19.57665 -19.25359 -18.89901 -18.63077 -18.17264 -17.77233 -17.21611 -16.57754 -16.44593 -16.30703 -16.08611 -15.97877 -15.80555 -15.77274 -15.01426 -14.95013 -14.48066 -14.41623 -14.33028 -14.01757 -13.84602 -13.68578 -13.10267 -13.04392 -12.53624 -12.33226 -12.19147 -12.01781 -11.81647 -11.74376 -11.61856 -11.24641 -10.92112 -10.81687 -10.18241 -9.93289 -9.09683 -8.33686 -6.40853 -0.73577 -0.57879 1.15997 1.36422 1.38589 1.49686 1.62807 2.00856 2.17036 2.32791 2.73002 2.85498 3.01947 3.20342 3.26173 3.38379 3.86964 3.96142 4.03900 4.08861 4.23946 4.31687 4.45179 4.52800 4.55291 4.58320 4.69275 4.81719 4.97426 5.04273 5.06898 5.15175 5.21364 5.31132 5.45966 5.94819 6.12527 6.22258 6.27208 6.28264 6.67077 6.73464 7.26964 8.83066 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.003720 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.840315 B = 7525.652459 C = 7924.283687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.238 1.238 7 C -0.553 4.553 8 H 0.024 0.976 9 C 0.158 3.842 10 N -0.516 5.516 11 C 0.049 3.951 12 C 0.126 3.874 13 N -0.594 5.594 14 C 0.557 3.443 15 O -0.565 6.565 16 C -0.097 4.097 17 C -0.097 4.097 18 C 0.150 3.850 19 N -0.485 5.485 20 C 0.274 3.726 21 F -0.109 7.109 22 C 0.040 3.960 23 F -0.130 7.130 24 C 0.115 3.885 25 C 0.042 3.958 26 H 0.265 0.735 27 H 0.037 0.963 28 H 0.041 0.959 29 H -0.002 1.002 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.206 0.794 34 H 0.240 0.760 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.000 1.000 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.838 -14.706 -6.592 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.161 1.161 7 C -0.592 4.592 8 H 0.042 0.958 9 C 0.031 3.969 10 N -0.239 5.239 11 C -0.080 4.080 12 C 0.004 3.996 13 N -0.325 5.325 14 C 0.344 3.656 15 O -0.445 6.445 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.007 4.007 19 N -0.200 5.200 20 C 0.120 3.880 21 F -0.088 7.088 22 C 0.016 3.984 23 F -0.109 7.109 24 C -0.007 4.007 25 C -0.087 4.087 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.223 0.777 34 H 0.256 0.744 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.018 0.982 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.835 -15.322 -6.712 23.732 hybrid contribution -2.584 1.305 1.226 3.144 sum 14.250 -14.017 -5.485 20.727 Atomic orbital electron populations 1.70116 1.08754 1.28240 1.52180 1.26037 0.95492 1.03876 0.93684 0.85596 0.79564 0.77628 0.79415 1.18819 1.21678 1.16068 1.21934 0.93198 0.92772 1.51300 0.95807 1.20124 0.91234 0.87757 0.97798 1.62492 1.57129 1.02660 1.01585 1.22288 0.96504 0.95789 0.93452 1.21851 1.01659 0.88355 0.87749 1.48210 1.61739 1.12790 1.09759 1.18199 0.77269 0.82232 0.87855 1.90808 1.51795 1.74343 1.27509 1.20440 0.93668 0.99112 0.97616 1.22927 0.99972 0.97355 0.91430 1.23611 0.92069 0.89071 0.95905 1.67141 1.00966 1.23319 1.28527 1.18008 0.83855 0.94827 0.91317 1.91653 1.41634 1.81724 1.93784 1.18718 0.86302 1.02231 0.91135 1.91562 1.56297 1.93646 1.69391 1.22409 1.03652 0.92654 0.81979 1.22472 0.96104 0.94160 0.95987 0.92598 0.94447 0.94105 0.98345 0.89318 0.89993 0.86883 0.77678 0.74373 0.85562 0.88216 0.98165 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.01 0.39 5.47 84.66 0.46 0.85 16 3 Si 0.96 42.12 27.57 68.60 1.89 44.01 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.43 6.41 99.48 0.64 -8.79 16 7 C -0.55 -30.43 8.32 25.60 0.21 -30.22 16 8 H 0.02 1.51 6.12 -2.91 -0.02 1.49 16 9 C 0.16 6.84 4.20 85.56 0.36 7.19 16 10 N -0.52 -18.34 4.83 -898.88 -4.34 -22.68 16 11 C 0.05 1.74 5.25 86.38 0.45 2.20 16 12 C 0.13 3.46 6.61 86.35 0.57 4.03 16 13 N -0.59 -15.64 3.00 -820.28 -2.46 -18.10 16 14 C 0.56 16.37 7.01 86.83 0.61 16.98 16 15 O -0.57 -21.40 16.36 -3.80 -0.06 -21.46 16 16 C -0.10 -2.21 4.64 -19.86 -0.09 -2.30 16 17 C -0.10 -1.04 7.93 22.62 0.18 -0.86 16 18 C 0.15 1.35 11.16 84.61 0.94 2.29 16 19 N -0.49 -9.06 10.34 -196.92 -2.04 -11.09 16 20 C 0.27 6.78 8.42 84.84 0.71 7.50 16 21 F -0.11 -2.99 17.21 44.97 0.77 -2.21 16 22 C 0.04 1.12 7.33 22.83 0.17 1.29 16 23 F -0.13 -4.59 16.68 44.97 0.75 -3.84 16 24 C 0.11 2.38 5.74 86.50 0.50 2.88 16 25 C 0.04 1.36 5.17 86.54 0.45 1.80 16 26 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.04 1.60 6.79 -2.39 -0.02 1.58 16 28 H 0.04 1.68 7.81 -2.39 -0.02 1.66 16 29 H 0.00 -0.09 7.11 -2.38 -0.02 -0.10 16 30 H 0.09 2.99 8.06 -2.39 -0.02 2.97 16 31 H 0.08 2.46 7.04 -2.39 -0.02 2.44 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.21 0.45 7.76 -2.91 -0.02 0.43 16 34 H 0.24 -0.47 8.06 -2.91 -0.02 -0.49 16 35 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 1.67 5.53 -2.39 -0.01 1.66 16 37 H 0.00 0.00 6.62 -2.39 -0.02 -0.02 16 38 H 0.10 2.82 8.11 -2.39 -0.02 2.80 16 Total: -1.00 -80.56 321.41 1.38 -79.18 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.04 Total: 1.73 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.53 Total: 13.63 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -8.54 Total: -111.05 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 1.52 Total: -6.06 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.89 Total: 44.01 kcal Total: -80.56 1.38 -79.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.055 kcal (2) G-P(sol) polarization free energy of solvation -80.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds