Wall clock time and date at job start Fri Apr 10 2020 22:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48496 * 109.47287 * 270.00362 * 3 2 1 5 5 H 1.48504 * 109.47051 * 30.00373 * 3 2 1 6 6 H 1.48499 * 109.46738 * 150.00369 * 3 2 1 7 7 C 1.38972 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 N 1.37311 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.36507 * 126.06822 * 179.71333 * 9 7 2 11 11 C 1.35697 * 107.50516 * 179.83327 * 10 9 7 12 12 N 1.40499 * 126.08686 * 180.13644 * 11 10 9 13 13 C 1.37677 * 119.99976 * 174.91341 * 12 11 10 14 14 C 1.38222 * 120.62250 * 103.82428 * 13 12 11 15 15 C 1.39208 * 119.21196 * 179.74303 * 14 13 12 16 16 N 1.31973 * 120.05065 * 0.49625 * 15 14 13 17 17 C 1.33701 * 121.45870 * 359.77215 * 16 15 14 18 18 N 1.32879 * 132.43086 * 179.97438 * 17 16 15 19 19 C 1.32724 * 109.75521 * 180.02562 * 18 17 16 20 20 N 1.31069 * 109.62174 * 0.02562 * 19 18 17 21 21 N 1.36544 * 120.62062 * 284.11061 * 13 12 11 22 22 C 1.51394 * 109.45335 * 180.33987 * 15 14 13 23 23 C 1.54692 * 105.14267 * 342.38471 * 22 15 14 24 24 C 1.51168 * 130.98886 * 359.95772 * 14 13 12 25 25 C 1.40685 * 107.82724 * 0.42568 * 11 10 9 26 26 N 1.30907 * 108.38565 * 359.73420 * 25 11 10 27 27 H 0.96999 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.08000 * 126.24752 * 359.97438 * 10 9 7 29 29 H 0.96995 * 120.00218 * 354.91666 * 12 11 10 30 30 H 1.08003 * 125.18936 * 179.97438 * 19 18 17 31 31 H 1.08996 * 110.29088 * 101.93203 * 22 15 14 32 32 H 1.09004 * 110.28407 * 224.04164 * 22 15 14 33 33 H 1.08999 * 111.21112 * 268.55598 * 23 22 15 34 34 H 1.08999 * 110.68748 * 145.05195 * 23 22 15 35 35 H 1.08994 * 110.30282 * 316.11180 * 24 14 13 36 36 H 1.09003 * 110.29899 * 78.16394 * 24 14 13 37 37 H 1.08008 * 125.81095 * 179.75291 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4943 2.0466 -1.4000 5 1 1.4443 2.6527 0.7001 6 1 3.5445 1.4402 0.7000 7 6 2.0079 -1.2035 -0.0005 8 1 3.0879 -1.2035 -0.0010 9 7 1.3214 -2.3927 -0.0016 10 6 1.8752 -3.6404 -0.0077 11 6 0.8580 -4.5385 -0.0028 12 7 0.9890 -5.9373 -0.0038 13 6 -0.1286 -6.7335 0.1074 14 6 -0.6441 -7.3819 -0.9991 15 6 -1.7723 -8.1840 -0.8522 16 7 -2.3433 -8.3112 0.3308 17 6 -1.8601 -7.6864 1.4096 18 7 -2.2506 -7.6583 2.6794 19 6 -1.4356 -6.8816 3.3823 20 7 -0.5079 -6.3919 2.5966 21 7 -0.7521 -6.8928 1.3117 22 6 -2.1390 -8.7884 -2.1909 23 6 -1.3998 -7.9250 -3.2402 24 6 -0.1898 -7.3963 -2.4409 25 6 -0.3513 -3.8195 -0.0033 26 7 -0.0714 -2.5407 -0.0026 27 1 -0.4850 0.8400 0.0004 28 1 2.9304 -3.8707 -0.0130 29 1 1.8669 -6.3421 -0.0827 30 1 -1.5240 -6.6827 4.4402 31 1 -1.8090 -9.8260 -2.2404 32 1 -3.2153 -8.7253 -2.3520 33 1 -2.0255 -7.1018 -3.5850 34 1 -1.0711 -8.5372 -4.0801 35 1 0.0674 -6.3884 -2.7664 36 1 0.6651 -8.0617 -2.5614 37 1 -1.3421 -4.2495 -0.0039 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865484931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:05 Heat of formation + Delta-G solvation = 233.155138 kcal Electronic energy + Delta-G solvation = -25025.343097 eV Core-core repulsion = 21421.513337 eV Total energy + Delta-G solvation = -3603.829760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.63593 -39.86235 -39.46918 -36.45363 -35.46082 -33.61648 -32.53152 -30.53179 -30.29126 -29.58136 -27.80974 -27.30796 -24.97877 -24.08351 -22.59208 -21.69966 -20.83032 -20.71659 -19.68470 -18.56577 -17.68811 -17.34711 -16.76269 -16.05966 -15.64816 -15.50914 -15.13948 -14.50803 -14.02993 -13.79600 -13.60565 -13.31116 -13.16345 -12.97520 -12.73741 -12.41882 -11.99028 -11.79355 -11.53063 -11.48030 -11.37010 -11.32152 -11.02390 -10.97331 -10.57612 -10.47318 -9.88769 -9.76065 -9.24578 -9.18860 -8.98334 -8.30073 -8.20281 -6.68026 -6.62887 -4.30112 0.53382 0.91827 2.03530 2.78081 2.91761 3.00948 3.06381 3.15629 3.45818 3.50773 3.56852 3.81812 4.09393 4.30892 4.36409 4.45229 4.66196 4.81135 4.85420 4.94989 5.06557 5.24620 5.44902 5.47726 5.56447 5.67163 5.91136 5.98891 5.99803 6.04217 6.21045 6.25553 6.44953 6.51095 6.64054 6.80662 7.11198 7.30228 7.65094 7.80632 7.96251 8.14407 8.22255 8.60012 9.27644 9.52355 10.33317 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.003956 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.064970 B = 7076.406682 C = 7986.644819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.321 4.321 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.086 4.086 11 C -0.012 4.012 12 N -0.665 5.665 13 C 0.476 3.524 14 C -0.216 4.216 15 C 0.228 3.772 16 N -0.474 5.474 17 C 0.451 3.549 18 N -0.540 5.540 19 C 0.237 3.763 20 N -0.316 5.316 21 N -0.329 5.329 22 C -0.069 4.069 23 C -0.117 4.117 24 C -0.055 4.055 25 C -0.064 4.064 26 N -0.245 5.245 27 H 0.275 0.725 28 H 0.147 0.853 29 H 0.411 0.589 30 H 0.226 0.774 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -13.726 -5.728 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.453 4.453 8 H 0.135 0.865 9 N 0.093 4.907 10 C -0.236 4.236 11 C -0.117 4.117 12 N -0.303 5.303 13 C 0.262 3.738 14 C -0.227 4.227 15 C 0.065 3.935 16 N -0.191 5.191 17 C 0.090 3.910 18 N -0.274 5.274 19 C -0.065 4.065 20 N -0.146 5.146 21 N -0.114 5.114 22 C -0.107 4.107 23 C -0.155 4.155 24 C -0.093 4.093 25 C -0.240 4.240 26 N -0.078 5.078 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.250 0.750 30 H 0.242 0.758 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.316 -12.429 -4.832 13.339 hybrid contribution 1.664 0.237 0.212 1.694 sum 1.347 -12.192 -4.621 13.108 Atomic orbital electron populations 1.70203 1.06165 1.28088 1.35397 1.25631 0.95705 1.00298 0.95441 0.85818 0.79434 0.79879 0.79005 1.19530 1.20056 1.18756 1.19891 0.91698 0.80436 1.53291 0.86488 1.44448 1.03562 1.03384 1.39311 1.21154 0.96851 0.84998 1.20619 1.17012 0.93838 0.80257 1.20567 1.40243 1.04459 1.02366 1.83183 1.17213 0.86493 0.88642 0.81459 1.21235 1.00304 1.05295 0.95851 1.22375 0.89081 0.89581 0.92500 1.67006 1.31063 1.24618 0.96385 1.22567 0.84552 0.90522 0.93318 1.70830 1.30458 1.27363 0.98761 1.26253 0.88082 0.90947 1.01189 1.78658 1.25434 1.24540 0.85978 1.50161 1.22136 1.31136 1.07920 1.21182 1.02855 0.99950 0.86697 1.22408 0.96440 0.99617 0.97006 1.20701 0.98187 1.03379 0.87059 1.22984 0.95707 0.92121 1.13160 1.78187 0.90617 1.13935 1.25034 0.91418 0.83597 0.74995 0.75757 0.87877 0.88586 0.89975 0.89348 0.89272 0.89801 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.20 11.81 55.49 0.66 -20.54 16 2 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 3 Si 0.93 18.60 29.55 -169.99 -5.02 13.58 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.32 -8.30 10.25 -14.83 -0.15 -8.45 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.67 3.74 -11.41 -0.04 -3.72 16 10 C -0.09 -1.97 11.49 -16.38 -0.19 -2.16 16 11 C -0.01 -0.26 6.91 -83.87 -0.58 -0.84 16 12 N -0.66 -11.44 5.43 -9.75 -0.05 -11.49 16 13 C 0.48 8.09 6.33 -152.96 -0.97 7.12 16 14 C -0.22 -2.96 6.11 -104.04 -0.64 -3.59 16 15 C 0.23 3.04 7.35 -81.83 -0.60 2.44 16 16 N -0.47 -8.00 10.46 -9.93 -0.10 -8.11 16 17 C 0.45 8.54 9.00 -323.26 -2.91 5.63 16 18 N -0.54 -10.17 11.26 -15.68 -0.18 -10.34 16 19 C 0.24 4.03 12.98 -91.97 -1.19 2.84 16 20 N -0.32 -6.22 12.78 29.26 0.37 -5.84 16 21 N -0.33 -6.23 3.93 -12.98 -0.05 -6.28 16 22 C -0.07 -0.56 6.78 -26.65 -0.18 -0.74 16 23 C -0.12 -0.83 7.09 -25.13 -0.18 -1.01 16 24 C -0.05 -0.53 6.69 -26.94 -0.18 -0.71 16 25 C -0.06 -1.61 11.32 -17.02 -0.19 -1.80 16 26 N -0.25 -6.91 10.39 30.81 0.32 -6.59 16 27 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.15 2.82 8.06 -52.49 -0.42 2.39 16 29 H 0.41 5.87 8.95 -40.82 -0.37 5.51 16 30 H 0.23 2.69 8.06 -52.48 -0.42 2.27 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.13 3.30 7.92 -52.48 -0.42 2.88 16 LS Contribution 326.45 15.07 4.92 4.92 Total: -1.00 -34.82 326.45 -10.95 -45.76 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.71 Total: 8.84 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -8.06 Total: -0.20 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: 0.92 Total: -72.91 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.82 -10.95 -45.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865484931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.918 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 244.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 233.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds