Wall clock time and date at job start Fri Apr 10 2020 22:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48496 * 109.47287 * 270.00362 * 3 2 1 5 5 H 1.48504 * 109.47051 * 30.00373 * 3 2 1 6 6 H 1.48499 * 109.46738 * 150.00369 * 3 2 1 7 7 C 1.38972 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 N 1.37311 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.36507 * 126.06822 * 179.71333 * 9 7 2 11 11 C 1.35697 * 107.50516 * 179.83327 * 10 9 7 12 12 N 1.40499 * 126.08686 * 180.13644 * 11 10 9 13 13 C 1.37677 * 119.99976 * 174.91341 * 12 11 10 14 14 C 1.38222 * 120.62250 * 103.82428 * 13 12 11 15 15 C 1.39208 * 119.21196 * 179.74303 * 14 13 12 16 16 N 1.31973 * 120.05065 * 0.49625 * 15 14 13 17 17 C 1.33701 * 121.45870 * 359.77215 * 16 15 14 18 18 N 1.32879 * 132.43086 * 179.97438 * 17 16 15 19 19 C 1.32724 * 109.75521 * 180.02562 * 18 17 16 20 20 N 1.31069 * 109.62174 * 0.02562 * 19 18 17 21 21 N 1.36544 * 120.62062 * 284.11061 * 13 12 11 22 22 C 1.51394 * 109.45335 * 180.33987 * 15 14 13 23 23 C 1.54692 * 105.14267 * 342.38471 * 22 15 14 24 24 C 1.51168 * 130.98886 * 359.95772 * 14 13 12 25 25 C 1.40685 * 107.82724 * 0.42568 * 11 10 9 26 26 N 1.30907 * 108.38565 * 359.73420 * 25 11 10 27 27 H 0.96999 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.08000 * 126.24752 * 359.97438 * 10 9 7 29 29 H 0.96995 * 120.00218 * 354.91666 * 12 11 10 30 30 H 1.08003 * 125.18936 * 179.97438 * 19 18 17 31 31 H 1.08996 * 110.29088 * 101.93203 * 22 15 14 32 32 H 1.09004 * 110.28407 * 224.04164 * 22 15 14 33 33 H 1.08999 * 111.21112 * 268.55598 * 23 22 15 34 34 H 1.08999 * 110.68748 * 145.05195 * 23 22 15 35 35 H 1.08994 * 110.30282 * 316.11180 * 24 14 13 36 36 H 1.09003 * 110.29899 * 78.16394 * 24 14 13 37 37 H 1.08008 * 125.81095 * 179.75291 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4943 2.0466 -1.4000 5 1 1.4443 2.6527 0.7001 6 1 3.5445 1.4402 0.7000 7 6 2.0079 -1.2035 -0.0005 8 1 3.0879 -1.2035 -0.0010 9 7 1.3214 -2.3927 -0.0016 10 6 1.8752 -3.6404 -0.0077 11 6 0.8580 -4.5385 -0.0028 12 7 0.9890 -5.9373 -0.0038 13 6 -0.1286 -6.7335 0.1074 14 6 -0.6441 -7.3819 -0.9991 15 6 -1.7723 -8.1840 -0.8522 16 7 -2.3433 -8.3112 0.3308 17 6 -1.8601 -7.6864 1.4096 18 7 -2.2506 -7.6583 2.6794 19 6 -1.4356 -6.8816 3.3823 20 7 -0.5079 -6.3919 2.5966 21 7 -0.7521 -6.8928 1.3117 22 6 -2.1390 -8.7884 -2.1909 23 6 -1.3998 -7.9250 -3.2402 24 6 -0.1898 -7.3963 -2.4409 25 6 -0.3513 -3.8195 -0.0033 26 7 -0.0714 -2.5407 -0.0026 27 1 -0.4850 0.8400 0.0004 28 1 2.9304 -3.8707 -0.0130 29 1 1.8669 -6.3421 -0.0827 30 1 -1.5240 -6.6827 4.4402 31 1 -1.8090 -9.8260 -2.2404 32 1 -3.2153 -8.7253 -2.3520 33 1 -2.0255 -7.1018 -3.5850 34 1 -1.0711 -8.5372 -4.0801 35 1 0.0674 -6.3884 -2.7664 36 1 0.6651 -8.0617 -2.5614 37 1 -1.3421 -4.2495 -0.0039 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865484931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:04 Heat of formation + Delta-G solvation = 213.332120 kcal Electronic energy + Delta-G solvation = -25026.202687 eV Core-core repulsion = 21421.513337 eV Total energy + Delta-G solvation = -3604.689351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.93521 -41.55936 -40.76280 -37.80400 -36.52748 -35.41724 -34.00368 -32.29853 -31.75208 -30.76410 -29.19591 -28.50810 -26.82381 -25.29589 -23.80369 -23.18953 -22.49728 -21.66199 -21.38361 -19.96538 -19.25115 -18.62712 -18.10532 -17.62894 -17.27158 -16.78002 -16.35170 -15.72668 -15.61598 -15.39549 -15.04811 -14.91145 -14.33070 -13.93080 -13.72787 -13.60581 -13.50920 -13.32566 -12.96087 -12.87140 -12.83846 -12.71935 -12.13885 -12.10199 -11.97980 -11.78391 -11.32329 -11.02337 -10.97141 -10.90340 -10.37628 -10.17182 -9.61959 -8.49892 -8.40353 -6.25654 -0.70156 -0.32272 0.76693 1.28773 1.38745 1.49229 1.56344 1.74756 1.92277 2.08526 2.22310 2.27192 2.32952 2.82997 3.05515 3.08213 3.43568 3.54595 3.74569 3.92960 4.20306 4.25676 4.36595 4.45115 4.64753 4.66372 4.80476 4.83113 4.88715 4.99080 5.02882 5.13890 5.21670 5.26252 5.27181 5.30166 5.40292 5.59537 5.95092 6.32633 6.43702 6.57847 6.77895 6.87450 7.41603 7.60106 8.49640 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.003956 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.064970 B = 7076.406682 C = 7986.644819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.004 4.004 3 Si 1.017 2.983 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.246 1.246 7 C -0.351 4.351 8 H 0.140 0.860 9 N -0.162 5.162 10 C -0.090 4.090 11 C 0.017 3.983 12 N -0.654 5.654 13 C 0.435 3.565 14 C -0.197 4.197 15 C 0.229 3.771 16 N -0.493 5.493 17 C 0.433 3.567 18 N -0.564 5.564 19 C 0.241 3.759 20 N -0.359 5.359 21 N -0.336 5.336 22 C -0.064 4.064 23 C -0.106 4.106 24 C -0.057 4.057 25 C -0.082 4.082 26 N -0.296 5.296 27 H 0.276 0.724 28 H 0.182 0.818 29 H 0.425 0.575 30 H 0.264 0.736 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -15.246 -7.700 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.216 4.216 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.169 1.169 7 C -0.482 4.482 8 H 0.157 0.843 9 N 0.068 4.932 10 C -0.240 4.240 11 C -0.089 4.089 12 N -0.293 5.293 13 C 0.222 3.778 14 C -0.207 4.207 15 C 0.066 3.934 16 N -0.211 5.211 17 C 0.072 3.928 18 N -0.299 5.299 19 C -0.060 4.060 20 N -0.191 5.191 21 N -0.121 5.121 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.095 4.095 25 C -0.257 4.257 26 N -0.129 5.129 27 H 0.086 0.914 28 H 0.199 0.801 29 H 0.266 0.734 30 H 0.280 0.720 31 H 0.155 0.845 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.142 -14.011 -6.833 15.630 hybrid contribution 1.155 0.459 0.728 1.440 sum 2.297 -13.552 -6.105 15.040 Atomic orbital electron populations 1.70380 1.08384 1.29084 1.37553 1.26816 0.96422 1.04191 0.94132 0.84620 0.78249 0.74189 0.79361 1.18581 1.20361 1.16945 1.20596 0.92922 0.80854 1.53864 0.84274 1.44695 1.03168 1.04732 1.40644 1.21816 0.98653 0.84051 1.19432 1.16957 0.92223 0.82314 1.17413 1.40008 1.05558 1.00516 1.83236 1.17725 0.87589 0.90754 0.81714 1.21940 0.99266 1.02654 0.96824 1.23464 0.88186 0.88569 0.93163 1.67138 1.31779 1.25058 0.97080 1.22921 0.84909 0.90962 0.94020 1.70806 1.31370 1.28477 0.99286 1.26992 0.86881 0.89665 1.02480 1.78526 1.27286 1.26379 0.86866 1.50116 1.22384 1.31451 1.08163 1.21514 1.04023 1.01415 0.83231 1.22481 0.94725 0.99795 0.97326 1.20971 1.00640 1.03585 0.84303 1.22935 0.96420 0.92068 1.14279 1.78076 0.92354 1.15599 1.26884 0.91429 0.80087 0.73357 0.72029 0.84495 0.87235 0.90437 0.85310 0.90714 0.86601 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.11 11.81 21.66 0.26 -46.86 16 2 C 0.00 -0.21 5.50 84.95 0.47 0.26 16 3 Si 1.02 38.16 29.55 68.60 2.03 40.18 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 7 C -0.35 -18.33 10.25 84.01 0.86 -17.47 16 8 H 0.14 6.33 7.83 -2.91 -0.02 6.31 16 9 N -0.16 -8.79 3.74 -190.01 -0.71 -9.50 16 10 C -0.09 -4.09 11.49 83.38 0.96 -3.13 16 11 C 0.02 0.73 6.91 37.76 0.26 0.99 16 12 N -0.65 -22.20 5.43 -184.75 -1.00 -23.20 16 13 C 0.43 14.68 6.33 132.01 0.83 15.51 16 14 C -0.20 -5.07 6.11 -19.49 -0.12 -5.18 16 15 C 0.23 5.66 7.35 42.99 0.32 5.97 16 16 N -0.49 -16.40 10.46 -185.33 -1.94 -18.33 16 17 C 0.43 16.65 9.00 261.64 2.35 19.00 16 18 N -0.56 -21.74 11.26 -203.52 -2.29 -24.03 16 19 C 0.24 8.38 12.98 180.82 2.35 10.72 16 20 N -0.36 -14.56 12.78 -61.35 -0.78 -15.34 16 21 N -0.34 -13.02 3.93 -194.99 -0.77 -13.78 16 22 C -0.06 -0.78 6.78 30.65 0.21 -0.57 16 23 C -0.11 -1.03 7.09 31.63 0.22 -0.80 16 24 C -0.06 -0.92 6.69 30.46 0.20 -0.71 16 25 C -0.08 -4.25 11.32 85.43 0.97 -3.29 16 26 N -0.30 -17.36 10.39 -56.44 -0.59 -17.94 16 27 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.18 6.67 8.06 -2.91 -0.02 6.64 16 29 H 0.43 11.61 8.95 -92.71 -0.83 10.78 16 30 H 0.26 6.27 8.06 -2.91 -0.02 6.25 16 31 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.13 6.54 7.92 -2.91 -0.02 6.51 16 Total: -1.00 -81.86 326.45 4.40 -77.47 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.31 Total: 30.04 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 9.88 Total: 21.30 kcal Atomic # 7 Polarization: -161.17 SS G_CDS: -7.82 Total: -168.99 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Total: -81.86 4.40 -77.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865484931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 290.798 kcal (2) G-P(sol) polarization free energy of solvation -81.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds