Wall clock time and date at job start Fri Apr 10 2020 22:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48494 * 109.47276 * 270.00321 * 3 2 1 5 5 H 1.48506 * 109.46888 * 30.00205 * 3 2 1 6 6 H 1.48497 * 109.47132 * 149.99908 * 3 2 1 7 7 C 1.38804 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99922 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00269 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99959 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.78189 * 328.23652 * 10 9 7 12 12 C 1.55158 * 110.72014 * 204.99561 * 10 9 7 13 13 C 1.54900 * 101.62028 * 206.15214 * 12 10 9 14 14 N 1.47428 * 104.83145 * 36.99176 * 13 12 10 15 15 C 1.34774 * 125.65019 * 155.83897 * 14 13 12 16 16 O 1.21542 * 120.00152 * 175.31890 * 15 14 13 17 17 C 1.47907 * 119.99691 * 355.31515 * 15 14 13 18 18 C 1.38888 * 121.11490 * 41.25096 * 17 15 14 19 19 C 1.39268 * 119.58373 * 179.97438 * 18 17 15 20 20 N 1.30997 * 121.87922 * 0.02562 * 19 18 17 21 21 C 1.33529 * 121.82932 * 359.97438 * 20 19 18 22 22 C 1.40718 * 120.96664 * 180.02562 * 21 20 19 23 23 C 1.36073 * 119.73545 * 179.19730 * 22 21 20 24 24 C 1.39346 * 121.05485 * 0.80192 * 23 22 21 25 25 C 1.36252 * 120.83988 * 359.45241 * 24 23 22 26 26 C 1.40109 * 119.63892 * 359.97438 * 25 24 23 27 27 C 1.47020 * 108.70291 * 335.87166 * 14 13 12 28 28 H 0.97001 * 120.00399 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99993 * 359.97438 * 9 7 2 30 30 H 1.09006 * 111.00280 * 88.05963 * 12 10 9 31 31 H 1.09001 * 111.00031 * 324.24945 * 12 10 9 32 32 H 1.09000 * 110.36896 * 155.82914 * 13 12 10 33 33 H 1.08999 * 110.36706 * 278.15267 * 13 12 10 34 34 H 1.07997 * 120.21084 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.06202 * 179.97438 * 19 18 17 36 36 H 1.07993 * 120.13554 * 359.97170 * 22 21 20 37 37 H 1.07998 * 119.46926 * 180.25473 * 23 22 21 38 38 H 1.07996 * 119.58503 * 179.48018 * 24 23 22 39 39 H 1.08000 * 120.17996 * 180.02562 * 25 24 23 40 40 H 1.08989 * 109.88323 * 120.47707 * 27 14 13 41 41 H 1.09002 * 109.88262 * 241.49258 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0011 11 1 3.5549 -3.2395 0.5342 12 6 5.5255 -2.2892 0.6128 13 6 6.3134 -3.4321 -0.0746 14 7 5.7760 -3.4891 -1.4462 15 6 6.4222 -3.9774 -2.5234 16 8 5.8499 -4.0529 -3.5930 17 6 7.8280 -4.4214 -2.4039 18 6 8.2620 -5.1405 -1.2978 19 6 9.5929 -5.5431 -1.2184 20 7 10.4579 -5.2630 -2.1614 21 6 10.1120 -4.5757 -3.2528 22 6 11.0561 -4.2853 -4.2550 23 6 10.6725 -3.5972 -5.3646 24 6 9.3591 -3.1583 -5.5199 25 6 8.4191 -3.4166 -4.5680 26 6 8.7762 -4.1328 -3.4180 27 6 4.4186 -2.9243 -1.4446 28 1 -0.4851 0.8400 0.0004 29 1 3.8647 -0.3620 0.0004 30 1 5.5023 -2.4260 1.6940 31 1 5.9422 -1.3161 0.3531 32 1 7.3784 -3.2006 -0.0937 33 1 6.1389 -4.3765 0.4408 34 1 7.5719 -5.3860 -0.5042 35 1 9.9214 -6.1016 -0.3543 36 1 12.0781 -4.6179 -4.1499 37 1 11.3997 -3.3803 -6.1330 38 1 9.0825 -2.6069 -6.4063 39 1 7.4042 -3.0717 -4.6995 40 1 4.3721 -2.0693 -2.1189 41 1 3.7011 -3.6828 -1.7578 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969241333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:05 Heat of formation + Delta-G solvation = 49.473638 kcal Electronic energy + Delta-G solvation = -24842.824952 eV Core-core repulsion = 21302.277757 eV Total energy + Delta-G solvation = -3540.547195 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33673 -39.67958 -37.55148 -37.31388 -34.45440 -33.64681 -31.77055 -30.84626 -30.39388 -29.96489 -28.02042 -25.54478 -23.92448 -23.83876 -22.74264 -22.36971 -20.44830 -19.60823 -18.56003 -17.84513 -17.66814 -17.03963 -16.47268 -16.01526 -15.25778 -15.01335 -14.75925 -14.46522 -14.38310 -14.13913 -13.97675 -13.84404 -13.33509 -13.18713 -12.75195 -12.65419 -12.30410 -12.08779 -12.02993 -11.78740 -11.61380 -11.40297 -10.98990 -10.89172 -10.82722 -10.52592 -10.38394 -10.17221 -9.70488 -9.58824 -9.10139 -9.07098 -8.61824 -8.48793 -7.46843 -5.88604 -3.27450 -0.08243 0.51589 1.51828 2.54768 2.72237 2.94358 3.29351 3.32755 3.38722 3.84237 3.95834 4.14416 4.39627 4.44722 4.48356 4.57412 4.66861 4.84080 4.87932 4.95935 5.04691 5.07437 5.22045 5.28085 5.34573 5.48312 5.53531 5.54537 5.71046 5.73373 5.76674 5.79755 6.05059 6.07956 6.11043 6.19243 6.23938 6.29201 6.45945 6.56267 6.63670 7.46713 7.57052 7.84418 8.03450 8.29670 9.05543 9.77614 9.94723 11.28906 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.003194 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.378389 B = 8764.118695 C = 9313.572623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.256 4.256 8 H 0.093 0.907 9 N -0.735 5.735 10 C 0.178 3.822 11 H 0.079 0.921 12 C -0.146 4.146 13 C 0.096 3.904 14 N -0.602 5.602 15 C 0.566 3.434 16 O -0.527 6.527 17 C -0.055 4.055 18 C -0.148 4.148 19 C 0.129 3.871 20 N -0.464 5.464 21 C 0.126 3.874 22 C -0.098 4.098 23 C -0.097 4.097 24 C -0.116 4.116 25 C -0.088 4.088 26 C -0.069 4.069 27 C 0.082 3.918 28 H 0.262 0.738 29 H 0.364 0.636 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.166 0.834 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.144 0.856 40 H 0.074 0.926 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.130 -9.568 -3.422 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.111 0.889 9 N -0.376 5.376 10 C 0.066 3.934 11 H 0.097 0.903 12 C -0.185 4.185 13 C -0.027 4.027 14 N -0.335 5.335 15 C 0.354 3.646 16 O -0.405 6.405 17 C -0.066 4.066 18 C -0.168 4.168 19 C -0.043 4.043 20 N -0.173 5.173 21 C 0.005 3.995 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.134 4.134 25 C -0.107 4.107 26 C -0.071 4.071 27 C -0.043 4.043 28 H 0.072 0.928 29 H 0.198 0.802 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.092 0.908 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.434 -9.892 -4.051 25.757 hybrid contribution -0.383 1.445 -0.069 1.497 sum 23.051 -8.447 -4.120 24.893 Atomic orbital electron populations 1.69695 1.05149 1.26099 1.56459 1.24686 0.95232 0.97310 1.01350 0.86575 0.79216 0.84932 0.77924 1.20924 1.21530 1.20252 1.19082 0.80223 0.94957 1.44324 0.88898 1.42716 1.04235 1.01500 1.89194 1.21182 0.90658 0.90273 0.91252 0.90286 1.23154 0.96724 0.97958 1.00618 1.22547 0.98580 0.99569 0.82052 1.48485 1.17626 1.59633 1.07770 1.17739 0.85025 0.78396 0.83462 1.90793 1.67712 1.55055 1.26930 1.20416 0.93665 0.98070 0.94444 1.22567 0.97958 0.98482 0.97803 1.22913 0.88912 0.95668 0.96809 1.67800 1.37071 1.11394 1.01006 1.18836 0.91082 0.96098 0.93507 1.20793 0.99165 0.99188 0.92511 1.20976 0.96396 0.96929 0.97398 1.21041 0.93036 0.99844 0.99519 1.21374 1.01036 0.96028 0.92223 1.18626 0.93399 0.99730 0.95372 1.23285 0.80357 0.98466 1.02209 0.92826 0.80203 0.89457 0.90701 0.90690 0.90749 0.83522 0.81683 0.84533 0.85114 0.85209 0.83792 0.90792 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 21.30 27.74 -169.99 -4.71 16.58 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 7 C -0.26 -6.86 10.44 -15.06 -0.16 -7.02 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.74 -16.14 4.95 -51.63 -0.26 -16.40 16 10 C 0.18 3.06 3.61 -66.07 -0.24 2.82 16 11 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 12 C -0.15 -1.87 6.71 -24.59 -0.16 -2.04 16 13 C 0.10 1.04 5.27 -2.53 -0.01 1.03 16 14 N -0.60 -8.75 3.33 -171.59 -0.57 -9.32 16 15 C 0.57 8.80 7.14 -12.30 -0.09 8.71 16 16 O -0.53 -9.92 15.25 5.33 0.08 -9.84 16 17 C -0.05 -0.71 5.44 -104.34 -0.57 -1.28 16 18 C -0.15 -1.45 8.08 -38.96 -0.31 -1.77 16 19 C 0.13 1.18 11.14 -17.52 -0.20 0.99 16 20 N -0.46 -5.36 10.30 -11.01 -0.11 -5.48 16 21 C 0.13 1.55 6.61 -84.87 -0.56 0.99 16 22 C -0.10 -0.98 9.99 -39.42 -0.39 -1.38 16 23 C -0.10 -0.85 9.94 -39.95 -0.40 -1.25 16 24 C -0.12 -1.18 9.96 -39.88 -0.40 -1.58 16 25 C -0.09 -1.14 9.18 -39.59 -0.36 -1.50 16 26 C -0.07 -0.91 5.76 -106.52 -0.61 -1.53 16 27 C 0.08 1.41 6.63 -3.04 -0.02 1.39 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.36 7.90 5.62 -40.82 -0.23 7.67 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 32 H 0.07 0.71 6.79 -51.93 -0.35 0.36 16 33 H 0.07 0.64 7.38 -51.93 -0.38 0.26 16 34 H 0.15 1.10 6.06 -52.49 -0.32 0.78 16 35 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.14 2.08 6.01 -52.49 -0.32 1.76 16 40 H 0.07 1.44 8.03 -51.94 -0.42 1.02 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -33.46 338.53 -9.26 -42.72 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.98 Total: 7.38 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -4.58 Total: -3.20 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.16 Total: -58.74 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.46 -9.26 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969241333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.190 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds