Wall clock time and date at job start Fri Apr 10 2020 22:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48494 * 109.47276 * 270.00321 * 3 2 1 5 5 H 1.48506 * 109.46888 * 30.00205 * 3 2 1 6 6 H 1.48497 * 109.47132 * 149.99908 * 3 2 1 7 7 C 1.38804 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99922 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00269 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99959 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.78189 * 328.23652 * 10 9 7 12 12 C 1.55158 * 110.72014 * 204.99561 * 10 9 7 13 13 C 1.54900 * 101.62028 * 206.15214 * 12 10 9 14 14 N 1.47428 * 104.83145 * 36.99176 * 13 12 10 15 15 C 1.34774 * 125.65019 * 155.83897 * 14 13 12 16 16 O 1.21542 * 120.00152 * 175.31890 * 15 14 13 17 17 C 1.47907 * 119.99691 * 355.31515 * 15 14 13 18 18 C 1.38888 * 121.11490 * 41.25096 * 17 15 14 19 19 C 1.39268 * 119.58373 * 179.97438 * 18 17 15 20 20 N 1.30997 * 121.87922 * 0.02562 * 19 18 17 21 21 C 1.33529 * 121.82932 * 359.97438 * 20 19 18 22 22 C 1.40718 * 120.96664 * 180.02562 * 21 20 19 23 23 C 1.36073 * 119.73545 * 179.19730 * 22 21 20 24 24 C 1.39346 * 121.05485 * 0.80192 * 23 22 21 25 25 C 1.36252 * 120.83988 * 359.45241 * 24 23 22 26 26 C 1.40109 * 119.63892 * 359.97438 * 25 24 23 27 27 C 1.47020 * 108.70291 * 335.87166 * 14 13 12 28 28 H 0.97001 * 120.00399 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99993 * 359.97438 * 9 7 2 30 30 H 1.09006 * 111.00280 * 88.05963 * 12 10 9 31 31 H 1.09001 * 111.00031 * 324.24945 * 12 10 9 32 32 H 1.09000 * 110.36896 * 155.82914 * 13 12 10 33 33 H 1.08999 * 110.36706 * 278.15267 * 13 12 10 34 34 H 1.07997 * 120.21084 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.06202 * 179.97438 * 19 18 17 36 36 H 1.07993 * 120.13554 * 359.97170 * 22 21 20 37 37 H 1.07998 * 119.46926 * 180.25473 * 23 22 21 38 38 H 1.07996 * 119.58503 * 179.48018 * 24 23 22 39 39 H 1.08000 * 120.17996 * 180.02562 * 25 24 23 40 40 H 1.08989 * 109.88323 * 120.47707 * 27 14 13 41 41 H 1.09002 * 109.88262 * 241.49258 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0011 11 1 3.5549 -3.2395 0.5342 12 6 5.5255 -2.2892 0.6128 13 6 6.3134 -3.4321 -0.0746 14 7 5.7760 -3.4891 -1.4462 15 6 6.4222 -3.9774 -2.5234 16 8 5.8499 -4.0529 -3.5930 17 6 7.8280 -4.4214 -2.4039 18 6 8.2620 -5.1405 -1.2978 19 6 9.5929 -5.5431 -1.2184 20 7 10.4579 -5.2630 -2.1614 21 6 10.1120 -4.5757 -3.2528 22 6 11.0561 -4.2853 -4.2550 23 6 10.6725 -3.5972 -5.3646 24 6 9.3591 -3.1583 -5.5199 25 6 8.4191 -3.4166 -4.5680 26 6 8.7762 -4.1328 -3.4180 27 6 4.4186 -2.9243 -1.4446 28 1 -0.4851 0.8400 0.0004 29 1 3.8647 -0.3620 0.0004 30 1 5.5023 -2.4260 1.6940 31 1 5.9422 -1.3161 0.3531 32 1 7.3784 -3.2006 -0.0937 33 1 6.1389 -4.3765 0.4408 34 1 7.5719 -5.3860 -0.5042 35 1 9.9214 -6.1016 -0.3543 36 1 12.0781 -4.6179 -4.1499 37 1 11.3997 -3.3803 -6.1330 38 1 9.0825 -2.6069 -6.4063 39 1 7.4042 -3.0717 -4.6995 40 1 4.3721 -2.0693 -2.1189 41 1 3.7011 -3.6828 -1.7578 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969241333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:05 Heat of formation + Delta-G solvation = 26.769858 kcal Electronic energy + Delta-G solvation = -24843.809462 eV Core-core repulsion = 21302.277757 eV Total energy + Delta-G solvation = -3541.531705 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23214 -40.79320 -38.84528 -38.10294 -36.12178 -34.63033 -33.55159 -31.65788 -31.57005 -31.02376 -29.38241 -26.68617 -25.27631 -24.68313 -24.03502 -23.37645 -21.85451 -20.71323 -19.80836 -19.31536 -18.54887 -18.08769 -17.71079 -17.02962 -16.54273 -16.25054 -15.82515 -15.65564 -15.48814 -15.30036 -14.91305 -14.86002 -14.73508 -14.38247 -14.20727 -13.86636 -13.73723 -13.35073 -13.04381 -12.84050 -12.67202 -12.51802 -12.44075 -12.31917 -12.19697 -11.87392 -11.75865 -11.55106 -11.42804 -11.08108 -10.51253 -9.86491 -9.80060 -9.43529 -9.33856 -8.05848 -5.41950 -0.92188 -0.25679 0.63558 1.35894 1.39960 1.46537 1.50252 1.74690 1.95882 2.45528 3.02288 3.12664 3.24701 3.30719 3.46272 3.61152 3.63353 3.70040 3.81763 3.91605 4.11554 4.16852 4.25039 4.27598 4.34101 4.43049 4.49152 4.55825 4.59700 4.77649 4.81739 4.91698 4.98096 5.04519 5.10788 5.14498 5.28711 5.30542 5.43637 5.45359 5.73695 5.81546 6.17866 6.32237 6.79009 6.84960 7.02777 7.76458 7.94384 9.15107 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.003194 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.378389 B = 8764.118695 C = 9313.572623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.952 3.048 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.244 1.244 7 C -0.237 4.237 8 H 0.061 0.939 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.080 0.920 12 C -0.133 4.133 13 C 0.096 3.904 14 N -0.601 5.601 15 C 0.564 3.436 16 O -0.575 6.575 17 C -0.083 4.083 18 C -0.126 4.126 19 C 0.133 3.867 20 N -0.475 5.475 21 C 0.107 3.893 22 C -0.100 4.100 23 C -0.093 4.093 24 C -0.109 4.109 25 C -0.124 4.124 26 C -0.088 4.088 27 C 0.091 3.909 28 H 0.259 0.741 29 H 0.368 0.632 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.176 0.824 35 H 0.210 0.790 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.043 0.957 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.509 -10.221 -1.922 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.168 1.168 7 C -0.368 4.368 8 H 0.079 0.921 9 N -0.381 5.381 10 C 0.060 3.940 11 H 0.098 0.902 12 C -0.171 4.171 13 C -0.025 4.025 14 N -0.333 5.333 15 C 0.354 3.646 16 O -0.455 6.455 17 C -0.094 4.094 18 C -0.146 4.146 19 C -0.039 4.039 20 N -0.183 5.183 21 C -0.014 4.014 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.090 4.090 27 C -0.035 4.035 28 H 0.067 0.933 29 H 0.202 0.798 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.193 0.807 35 H 0.227 0.773 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.062 0.938 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 27.897 -10.579 -2.525 29.942 hybrid contribution -1.705 1.496 -0.575 2.339 sum 26.193 -9.083 -3.100 27.896 Atomic orbital electron populations 1.69877 1.07208 1.26795 1.59211 1.25506 0.96061 1.01305 1.02325 0.85463 0.79066 0.79768 0.77804 1.21261 1.22138 1.16797 1.19055 0.82420 0.93605 1.41720 0.92087 1.42685 1.02580 1.03544 1.89295 1.21397 0.93009 0.88308 0.91248 0.90242 1.23111 0.93073 0.98780 1.02153 1.22865 0.99466 1.00555 0.79608 1.48487 1.16399 1.59032 1.09377 1.18222 0.86034 0.77604 0.82762 1.90758 1.68972 1.57028 1.28792 1.20244 0.91901 1.00789 0.96448 1.22920 0.98811 0.96024 0.96840 1.23636 0.88165 0.94791 0.97289 1.67880 1.37778 1.11428 1.01241 1.19125 0.90902 0.96779 0.94590 1.21153 0.99782 0.98707 0.92171 1.21336 0.96190 0.95795 0.97915 1.21351 0.93314 0.98802 0.99170 1.21280 1.00542 0.98419 0.94013 1.18800 0.94266 1.00382 0.95583 1.22858 0.82069 0.96954 1.01576 0.93261 0.79776 0.86634 0.90916 0.88201 0.87242 0.80687 0.77333 0.82442 0.81471 0.83363 0.86658 0.93809 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.17 13.97 21.65 0.30 -61.87 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.95 44.38 27.74 68.60 1.90 46.28 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.24 -9.93 6.52 99.48 0.65 -9.28 16 7 C -0.24 -13.02 10.44 84.03 0.88 -12.14 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.74 -32.26 4.95 -317.25 -1.57 -33.83 16 10 C 0.17 5.72 3.61 46.20 0.17 5.89 16 11 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 12 C -0.13 -2.98 6.71 31.98 0.21 -2.77 16 13 C 0.10 1.75 5.27 86.85 0.46 2.21 16 14 N -0.60 -17.09 3.33 -815.06 -2.71 -19.80 16 15 C 0.56 17.87 7.14 86.81 0.62 18.49 16 16 O -0.57 -23.14 15.25 -3.85 -0.06 -23.20 16 17 C -0.08 -2.08 5.44 -19.68 -0.11 -2.19 16 18 C -0.13 -2.05 8.08 22.67 0.18 -1.87 16 19 C 0.13 1.90 11.14 85.07 0.95 2.85 16 20 N -0.47 -9.54 10.30 -188.74 -1.94 -11.49 16 21 C 0.11 2.44 6.61 40.34 0.27 2.70 16 22 C -0.10 -1.77 9.99 22.37 0.22 -1.54 16 23 C -0.09 -1.42 9.94 22.03 0.22 -1.20 16 24 C -0.11 -2.14 9.96 22.07 0.22 -1.92 16 25 C -0.12 -3.33 9.18 22.26 0.20 -3.13 16 26 C -0.09 -2.31 5.76 -21.09 -0.12 -2.44 16 27 C 0.09 3.24 6.63 86.75 0.57 3.82 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.86 16 29 H 0.37 15.44 5.62 -92.71 -0.52 14.92 16 30 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 32 H 0.10 1.42 6.79 -2.39 -0.02 1.41 16 33 H 0.11 1.31 7.38 -2.39 -0.02 1.29 16 34 H 0.18 1.74 6.06 -2.91 -0.02 1.72 16 35 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.12 3.70 6.01 -2.91 -0.02 3.68 16 40 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -79.16 338.53 1.82 -77.34 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.49 Total: 22.79 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.41 Total: 3.77 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -5.92 Total: -126.98 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Total: -79.16 1.82 -77.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969241333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.109 kcal (2) G-P(sol) polarization free energy of solvation -79.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds