Wall clock time and date at job start Fri Apr 10 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47122 * 239.99973 * 3 2 1 5 5 H 1.48492 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46853 * 120.00133 * 3 2 1 7 7 C 1.38814 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99820 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99859 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.91569 * 322.55312 * 10 9 7 12 12 C 1.55442 * 111.11787 * 198.55792 * 10 9 7 13 13 C 1.54332 * 102.96872 * 206.46677 * 12 10 9 14 14 N 1.47014 * 107.26773 * 22.19446 * 13 12 10 15 15 C 1.34784 * 125.64366 * 181.08197 * 14 13 12 16 16 O 1.21586 * 119.99754 * 174.83287 * 15 14 13 17 17 C 1.47549 * 120.00023 * 354.83362 * 15 14 13 18 18 C 1.38700 * 120.38477 * 313.35996 * 17 15 14 19 19 C 1.38973 * 120.53573 * 179.97438 * 18 17 15 20 20 C 1.36210 * 121.23599 * 0.02562 * 19 18 17 21 21 C 1.40714 * 120.20061 * 359.97438 * 20 19 18 22 22 N 1.33696 * 120.93766 * 179.97438 * 21 20 19 23 23 C 1.31062 * 121.34200 * 180.02562 * 22 21 20 24 24 C 1.39347 * 121.70368 * 0.02562 * 23 22 21 25 25 C 1.36675 * 119.87008 * 359.97438 * 24 23 22 26 26 C 1.40473 * 118.16622 * 359.74188 * 25 24 23 27 27 C 1.47419 * 108.71098 * 1.05503 * 14 13 12 28 28 H 0.97003 * 119.99658 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99913 * 0.02562 * 9 7 2 30 30 H 1.08995 * 110.70842 * 88.09488 * 12 10 9 31 31 H 1.09001 * 110.70832 * 324.83753 * 12 10 9 32 32 H 1.08992 * 109.87942 * 262.77378 * 13 12 10 33 33 H 1.09004 * 110.00927 * 141.68501 * 13 12 10 34 34 H 1.08002 * 119.73097 * 359.97438 * 18 17 15 35 35 H 1.07992 * 119.38354 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.89945 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.14847 * 179.97438 * 23 22 21 38 38 H 1.08001 * 120.06344 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.91701 * 180.02562 * 25 24 23 40 40 H 1.09002 * 110.36333 * 94.71148 * 27 14 13 41 41 H 1.09001 * 110.37183 * 216.92507 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9523 -3.5893 -0.6214 12 6 1.1474 -4.8289 -0.4630 13 6 1.7865 -6.0548 0.2230 14 7 2.5621 -5.5585 1.3690 15 6 3.2885 -6.3173 2.2136 16 8 3.9675 -5.7901 3.0734 17 6 3.2596 -7.7877 2.0946 18 6 2.0526 -8.4568 1.9560 19 6 2.0218 -9.8416 1.8432 20 6 3.1676 -10.5778 1.8658 21 6 4.4150 -9.9416 2.0046 22 7 5.5488 -10.6498 2.0291 23 6 6.7148 -10.0655 2.1585 24 6 6.8316 -8.6820 2.2773 25 6 5.7106 -7.9003 2.2596 26 6 4.4641 -8.5317 2.1146 27 6 2.4144 -4.0935 1.4413 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 1.1758 -4.9353 -1.5474 31 1 0.1247 -4.6821 -0.1155 32 1 2.4459 -6.5688 -0.4763 33 1 1.0091 -6.7363 0.5685 34 1 1.1292 -7.8971 1.9356 35 1 1.0717 -10.3435 1.7357 36 1 3.1186 -11.6529 1.7760 37 1 7.6082 -10.6721 2.1743 38 1 7.8059 -8.2284 2.3832 39 1 5.7814 -6.8265 2.3500 40 1 1.6107 -3.8267 2.1277 41 1 3.3505 -3.6329 1.7570 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969512911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:08 Heat of formation + Delta-G solvation = 43.998051 kcal Electronic energy + Delta-G solvation = -24751.473287 eV Core-core repulsion = 21210.688653 eV Total energy + Delta-G solvation = -3540.784635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24916 -39.66943 -37.45463 -37.05288 -34.21693 -33.60484 -31.76034 -30.83754 -30.39314 -29.67599 -27.56245 -25.08853 -24.23275 -23.76932 -23.14623 -22.19649 -20.24349 -19.48805 -18.53871 -17.60341 -17.23689 -17.06870 -16.44421 -15.90054 -15.40422 -14.95856 -14.69580 -14.47039 -14.34880 -14.00211 -13.65269 -13.50676 -13.25812 -13.15380 -12.89859 -12.50719 -12.35986 -12.19049 -11.89710 -11.63097 -11.53600 -11.12546 -10.88919 -10.77892 -10.75164 -10.37795 -10.18957 -10.08411 -9.81317 -9.55896 -9.06804 -9.05775 -8.57122 -8.39236 -7.13059 -5.87895 -3.18990 -0.01877 0.55559 1.57284 2.47691 2.84160 3.09821 3.39778 3.44558 3.45278 3.86530 4.00253 4.26255 4.47806 4.50843 4.53972 4.62675 4.75678 4.85582 4.86919 5.03836 5.07778 5.20336 5.25466 5.46057 5.53292 5.53305 5.66136 5.69299 5.71823 5.84032 5.88061 6.01726 6.06963 6.08114 6.17943 6.24176 6.30055 6.43511 6.50846 6.54660 6.81359 7.61463 7.61776 7.62893 8.15805 8.29734 9.41773 9.94016 10.28972 11.33989 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.002971 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.526582 B = 9421.593371 C =10190.925918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.711 5.711 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.140 4.140 13 C 0.101 3.899 14 N -0.604 5.604 15 C 0.568 3.432 16 O -0.536 6.536 17 C -0.094 4.094 18 C -0.083 4.083 19 C -0.104 4.104 20 C -0.077 4.077 21 C 0.122 3.878 22 N -0.477 5.477 23 C 0.133 3.867 24 C -0.177 4.177 25 C -0.047 4.047 26 C -0.070 4.070 27 C 0.081 3.919 28 H 0.258 0.742 29 H 0.387 0.613 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.070 0.930 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.401 -22.356 1.431 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.179 4.179 13 C -0.023 4.023 14 N -0.337 5.337 15 C 0.356 3.644 16 O -0.414 6.414 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.124 4.124 20 C -0.096 4.096 21 C 0.001 3.999 22 N -0.185 5.185 23 C -0.040 4.040 24 C -0.196 4.196 25 C -0.073 4.073 26 C -0.073 4.073 27 C -0.044 4.044 28 H 0.068 0.932 29 H 0.222 0.778 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.089 0.911 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.716 -22.831 1.822 23.867 hybrid contribution 0.177 1.835 0.197 1.854 sum 6.893 -20.996 2.019 22.190 Atomic orbital electron populations 1.69646 1.05175 1.26107 1.56812 1.24769 0.95533 0.97865 1.02225 0.86244 0.78580 0.83213 0.78006 1.21098 1.21600 1.21060 1.19205 0.91120 0.83876 1.43921 0.90973 1.42281 1.05790 0.99336 1.87683 1.21354 0.94645 0.86109 0.91890 0.91748 1.22962 1.00309 0.94055 1.00558 1.22174 0.94822 0.97564 0.87703 1.48493 1.47498 1.09399 1.28353 1.17788 0.79506 0.85722 0.81398 1.90792 1.41268 1.74028 1.35311 1.19957 0.93493 0.93259 1.03109 1.21493 0.97279 0.94754 0.96590 1.20840 0.98792 0.93419 0.99358 1.20941 0.89964 1.00678 0.97997 1.18806 0.93129 0.88954 0.98966 1.68051 0.97980 1.39324 1.13145 1.22989 0.95535 0.92618 0.92846 1.21977 0.99998 0.95134 1.02526 1.21784 0.91130 1.01885 0.92471 1.18585 0.93569 0.93770 1.01327 1.23503 1.02135 0.76575 1.02203 0.93249 0.77807 0.90045 0.90270 0.91579 0.91482 0.84503 0.84500 0.84369 0.82236 0.84254 0.83317 0.91137 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.69 9.98 -15.06 -0.15 -6.84 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.77 5.28 -51.20 -0.27 -17.04 16 10 C 0.17 3.20 3.70 -65.62 -0.24 2.95 16 11 H 0.06 1.23 8.13 -51.93 -0.42 0.80 16 12 C -0.14 -1.98 6.59 -24.74 -0.16 -2.14 16 13 C 0.10 1.23 5.96 -3.06 -0.02 1.21 16 14 N -0.60 -9.30 3.33 -171.74 -0.57 -9.88 16 15 C 0.57 9.13 6.87 -12.46 -0.09 9.04 16 16 O -0.54 -10.33 15.43 5.29 0.08 -10.25 16 17 C -0.09 -1.26 5.37 -104.65 -0.56 -1.82 16 18 C -0.08 -0.86 8.41 -39.14 -0.33 -1.19 16 19 C -0.10 -0.89 9.92 -40.04 -0.40 -1.29 16 20 C -0.08 -0.75 9.96 -39.38 -0.39 -1.15 16 21 C 0.12 1.50 6.60 -84.88 -0.56 0.94 16 22 N -0.48 -5.66 10.34 -10.99 -0.11 -5.77 16 23 C 0.13 1.28 11.15 -17.47 -0.19 1.08 16 24 C -0.18 -1.75 10.03 -39.73 -0.40 -2.15 16 25 C -0.05 -0.60 9.24 -39.31 -0.36 -0.96 16 26 C -0.07 -0.93 5.76 -106.53 -0.61 -1.54 16 27 C 0.08 1.47 6.62 -2.53 -0.02 1.46 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.39 9.62 7.72 -40.82 -0.32 9.30 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.67 5.86 -51.93 -0.30 0.36 16 34 H 0.14 1.23 6.34 -52.49 -0.33 0.90 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.15 2.07 6.21 -52.49 -0.33 1.74 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.46 7.99 -51.93 -0.41 1.05 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -32.44 343.04 -9.62 -42.07 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.04 Total: 7.90 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -4.58 Total: -2.67 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.23 Total: -59.08 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.44 -9.62 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969512911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.066 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds