Wall clock time and date at job start Fri Apr 10 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47122 * 239.99973 * 3 2 1 5 5 H 1.48492 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46853 * 120.00133 * 3 2 1 7 7 C 1.38814 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99820 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99859 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.91569 * 322.55312 * 10 9 7 12 12 C 1.55442 * 111.11787 * 198.55792 * 10 9 7 13 13 C 1.54332 * 102.96872 * 206.46677 * 12 10 9 14 14 N 1.47014 * 107.26773 * 22.19446 * 13 12 10 15 15 C 1.34784 * 125.64366 * 181.08197 * 14 13 12 16 16 O 1.21586 * 119.99754 * 174.83287 * 15 14 13 17 17 C 1.47549 * 120.00023 * 354.83362 * 15 14 13 18 18 C 1.38700 * 120.38477 * 313.35996 * 17 15 14 19 19 C 1.38973 * 120.53573 * 179.97438 * 18 17 15 20 20 C 1.36210 * 121.23599 * 0.02562 * 19 18 17 21 21 C 1.40714 * 120.20061 * 359.97438 * 20 19 18 22 22 N 1.33696 * 120.93766 * 179.97438 * 21 20 19 23 23 C 1.31062 * 121.34200 * 180.02562 * 22 21 20 24 24 C 1.39347 * 121.70368 * 0.02562 * 23 22 21 25 25 C 1.36675 * 119.87008 * 359.97438 * 24 23 22 26 26 C 1.40473 * 118.16622 * 359.74188 * 25 24 23 27 27 C 1.47419 * 108.71098 * 1.05503 * 14 13 12 28 28 H 0.97003 * 119.99658 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99913 * 0.02562 * 9 7 2 30 30 H 1.08995 * 110.70842 * 88.09488 * 12 10 9 31 31 H 1.09001 * 110.70832 * 324.83753 * 12 10 9 32 32 H 1.08992 * 109.87942 * 262.77378 * 13 12 10 33 33 H 1.09004 * 110.00927 * 141.68501 * 13 12 10 34 34 H 1.08002 * 119.73097 * 359.97438 * 18 17 15 35 35 H 1.07992 * 119.38354 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.89945 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.14847 * 179.97438 * 23 22 21 38 38 H 1.08001 * 120.06344 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.91701 * 180.02562 * 25 24 23 40 40 H 1.09002 * 110.36333 * 94.71148 * 27 14 13 41 41 H 1.09001 * 110.37183 * 216.92507 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9523 -3.5893 -0.6214 12 6 1.1474 -4.8289 -0.4630 13 6 1.7865 -6.0548 0.2230 14 7 2.5621 -5.5585 1.3690 15 6 3.2885 -6.3173 2.2136 16 8 3.9675 -5.7901 3.0734 17 6 3.2596 -7.7877 2.0946 18 6 2.0526 -8.4568 1.9560 19 6 2.0218 -9.8416 1.8432 20 6 3.1676 -10.5778 1.8658 21 6 4.4150 -9.9416 2.0046 22 7 5.5488 -10.6498 2.0291 23 6 6.7148 -10.0655 2.1585 24 6 6.8316 -8.6820 2.2773 25 6 5.7106 -7.9003 2.2596 26 6 4.4641 -8.5317 2.1146 27 6 2.4144 -4.0935 1.4413 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 1.1758 -4.9353 -1.5474 31 1 0.1247 -4.6821 -0.1155 32 1 2.4459 -6.5688 -0.4763 33 1 1.0091 -6.7363 0.5685 34 1 1.1292 -7.8971 1.9356 35 1 1.0717 -10.3435 1.7357 36 1 3.1186 -11.6529 1.7760 37 1 7.6082 -10.6721 2.1743 38 1 7.8059 -8.2284 2.3832 39 1 5.7814 -6.8265 2.3500 40 1 1.6107 -3.8267 2.1277 41 1 3.3505 -3.6329 1.7570 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969512911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:08 Heat of formation + Delta-G solvation = 22.998025 kcal Electronic energy + Delta-G solvation = -24752.383917 eV Core-core repulsion = 21210.688653 eV Total energy + Delta-G solvation = -3541.695264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15400 -40.83395 -38.76713 -37.93182 -35.98395 -34.48066 -33.43325 -31.62103 -31.55394 -30.97469 -29.04091 -26.36910 -25.47491 -24.58013 -24.51994 -23.27846 -21.72656 -20.59127 -19.48798 -19.25665 -18.29976 -18.08902 -17.53305 -17.23086 -16.64561 -16.23486 -15.74198 -15.65132 -15.34605 -15.27994 -14.97906 -14.85354 -14.45861 -14.26210 -14.09678 -13.80417 -13.63882 -13.17998 -13.01091 -12.88398 -12.77048 -12.58198 -12.39744 -12.35069 -12.11493 -11.80351 -11.63733 -11.60240 -11.31428 -11.01863 -10.51835 -9.84592 -9.79337 -9.32762 -9.10213 -7.99418 -5.29366 -0.85694 -0.22955 0.65455 1.46420 1.48631 1.51303 1.54679 1.77914 2.00604 2.53471 3.03274 3.23263 3.29314 3.35438 3.60158 3.68057 3.73823 3.80064 3.91295 3.97100 4.04352 4.11709 4.23382 4.31347 4.38915 4.44519 4.51854 4.66161 4.72405 4.74946 4.81780 4.96717 4.99620 5.06343 5.12773 5.16671 5.25959 5.30148 5.33707 5.48593 5.50523 5.76426 6.22456 6.39776 6.82125 6.91931 7.30196 8.00883 8.25741 9.22887 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.002971 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.526582 B = 9421.593371 C =10190.925918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.072 0.928 9 N -0.721 5.721 10 C 0.165 3.835 11 H 0.059 0.941 12 C -0.127 4.127 13 C 0.103 3.897 14 N -0.604 5.604 15 C 0.567 3.433 16 O -0.581 6.581 17 C -0.124 4.124 18 C -0.067 4.067 19 C -0.095 4.095 20 C -0.073 4.073 21 C 0.102 3.898 22 N -0.490 5.490 23 C 0.132 3.868 24 C -0.164 4.164 25 C -0.080 4.080 26 C -0.087 4.087 27 C 0.093 3.907 28 H 0.253 0.747 29 H 0.380 0.620 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.154 0.846 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.199 0.801 38 H 0.166 0.834 39 H 0.125 0.875 40 H 0.053 0.947 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 -25.425 0.637 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.090 0.910 9 N -0.361 5.361 10 C 0.055 3.945 11 H 0.077 0.923 12 C -0.165 4.165 13 C -0.018 4.018 14 N -0.336 5.336 15 C 0.357 3.643 16 O -0.462 6.462 17 C -0.128 4.128 18 C -0.086 4.086 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.019 4.019 22 N -0.198 5.198 23 C -0.041 4.041 24 C -0.184 4.184 25 C -0.106 4.106 26 C -0.089 4.089 27 C -0.033 4.033 28 H 0.062 0.938 29 H 0.213 0.787 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.171 0.829 35 H 0.196 0.804 36 H 0.179 0.821 37 H 0.215 0.785 38 H 0.184 0.816 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.700 -25.954 1.006 26.824 hybrid contribution 0.269 2.654 0.469 2.708 sum 6.969 -23.300 1.476 24.365 Atomic orbital electron populations 1.69779 1.06399 1.26340 1.58751 1.25500 0.96356 1.00885 1.03150 0.85292 0.77347 0.79478 0.78121 1.20185 1.21911 1.20896 1.19536 0.91369 0.85239 1.42086 0.90983 1.42379 1.05544 1.00289 1.87848 1.21496 0.95264 0.85899 0.91887 0.92301 1.22897 0.99364 0.92305 1.01942 1.22380 0.95578 0.97103 0.86766 1.48487 1.47934 1.07908 1.29267 1.18310 0.78398 0.87107 0.80450 1.90754 1.43105 1.75193 1.37188 1.19734 0.95019 0.91101 1.06947 1.21785 0.96559 0.95869 0.94337 1.21231 1.00165 0.92343 0.97669 1.21321 0.89315 1.01946 0.96565 1.19160 0.94433 0.88522 0.99749 1.68120 0.98533 1.39566 1.13587 1.23608 0.96249 0.92741 0.91475 1.22302 1.00275 0.95392 1.00383 1.21749 0.92582 1.01151 0.95164 1.18747 0.93619 0.94595 1.01973 1.23036 0.99981 0.78891 1.01427 0.93793 0.78717 0.88083 0.90029 0.89751 0.88105 0.82855 0.80353 0.82102 0.78471 0.81634 0.85743 0.92828 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.28 13.06 21.65 0.28 -56.99 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.25 -13.65 9.98 84.03 0.84 -12.81 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.72 -34.71 5.28 -315.90 -1.67 -36.37 16 10 C 0.17 6.19 3.70 46.49 0.17 6.37 16 11 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 12 C -0.13 -3.35 6.59 31.89 0.21 -3.14 16 13 C 0.10 2.29 5.96 86.73 0.52 2.81 16 14 N -0.60 -18.62 3.33 -815.53 -2.71 -21.33 16 15 C 0.57 18.72 6.87 86.70 0.60 19.32 16 16 O -0.58 -23.90 15.43 -3.99 -0.06 -23.96 16 17 C -0.12 -3.23 5.37 -19.88 -0.11 -3.34 16 18 C -0.07 -1.20 8.41 22.56 0.19 -1.01 16 19 C -0.09 -1.22 9.92 21.97 0.22 -1.00 16 20 C -0.07 -1.19 9.96 22.40 0.22 -0.96 16 21 C 0.10 2.33 6.60 40.27 0.27 2.60 16 22 N -0.49 -10.63 10.34 -188.68 -1.95 -12.58 16 23 C 0.13 2.26 11.15 85.07 0.95 3.21 16 24 C -0.16 -3.11 10.03 22.17 0.22 -2.89 16 25 C -0.08 -2.12 9.24 22.45 0.21 -1.91 16 26 C -0.09 -2.29 5.76 -21.10 -0.12 -2.41 16 27 C 0.09 3.52 6.62 86.86 0.57 4.09 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.38 19.24 7.72 -92.71 -0.72 18.52 16 30 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.16 8.01 -2.39 -0.02 2.14 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.61 5.86 -2.39 -0.01 1.60 16 34 H 0.15 2.17 6.34 -2.91 -0.02 2.15 16 35 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.12 3.81 6.21 -2.91 -0.02 3.79 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.93 7.99 -2.39 -0.02 1.91 16 Total: -1.00 -74.32 343.04 1.69 -72.63 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.35 Total: 25.22 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.42 Total: 5.67 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -6.05 Total: -127.28 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.32 1.69 -72.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969512911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.629 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds