Wall clock time and date at job start Fri Apr 10 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48502 * 109.47104 * 270.00148 * 3 2 1 5 5 H 1.48502 * 109.46740 * 30.00188 * 3 2 1 6 6 H 1.48504 * 109.46870 * 150.00041 * 3 2 1 7 7 C 1.38817 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00431 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99704 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00020 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.78068 * 323.21683 * 10 9 7 12 12 C 1.55157 * 110.72064 * 199.98090 * 10 9 7 13 13 C 1.55133 * 101.48027 * 205.97132 * 12 10 9 14 14 N 1.47420 * 104.72626 * 37.29434 * 13 12 10 15 15 C 1.34776 * 125.64975 * 155.81666 * 14 13 12 16 16 O 1.21543 * 120.00179 * 179.68920 * 15 14 13 17 17 C 1.47945 * 119.99916 * 359.69043 * 15 14 13 18 18 N 1.32207 * 120.15924 * 5.76813 * 17 15 14 19 19 C 1.32022 * 122.67709 * 180.02562 * 18 17 15 20 20 C 1.36695 * 122.03603 * 359.72885 * 19 18 17 21 21 C 1.40527 * 118.84231 * 0.51653 * 20 19 18 22 22 C 1.40325 * 122.22743 * 179.78806 * 21 20 19 23 23 C 1.36205 * 119.45579 * 179.71914 * 22 21 20 24 24 C 1.39383 * 121.00138 * 0.02562 * 23 22 21 25 25 C 1.36261 * 121.08189 * 359.97438 * 24 23 22 26 26 C 1.40090 * 119.53581 * 359.95429 * 25 24 23 27 27 C 1.47019 * 108.70212 * 335.55275 * 14 13 12 28 28 H 0.96996 * 120.00176 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99657 * 0.02562 * 9 7 2 30 30 H 1.09000 * 111.00203 * 324.20320 * 12 10 9 31 31 H 1.08996 * 111.00589 * 88.02235 * 12 10 9 32 32 H 1.08995 * 110.49705 * 278.44414 * 13 12 10 33 33 H 1.09001 * 110.34054 * 156.05785 * 13 12 10 34 34 H 1.08002 * 118.98339 * 179.97438 * 19 18 17 35 35 H 1.07992 * 120.57770 * 180.27096 * 20 19 18 36 36 H 1.08000 * 120.26986 * 359.73827 * 22 21 20 37 37 H 1.07997 * 119.50300 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.46171 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.23125 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.88542 * 120.70498 * 27 14 13 41 41 H 1.09007 * 109.88210 * 241.71964 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5989 -3.2138 0.6095 12 6 5.5680 -2.2643 0.4942 13 6 6.3000 -3.4439 -0.1981 14 7 5.6611 -3.5563 -1.5219 15 6 6.2230 -4.0954 -2.6220 16 8 5.5982 -4.1403 -3.6636 17 6 7.6002 -4.6324 -2.5617 18 7 8.2408 -4.6896 -1.4067 19 6 9.4700 -5.1586 -1.2958 20 6 10.1679 -5.6256 -2.3744 21 6 9.5595 -5.5944 -3.6407 22 6 10.2121 -6.0513 -4.7959 23 6 9.5667 -6.0002 -5.9943 24 6 8.2690 -5.5007 -6.0902 25 6 7.6061 -5.0489 -4.9888 26 6 8.2372 -5.0872 -3.7387 27 6 4.3073 -2.9887 -1.4417 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0007 30 1 5.9621 -1.3049 0.1591 31 1 5.6277 -2.3515 1.5790 32 1 6.1620 -4.3643 0.3692 33 1 7.3612 -3.2198 -0.3068 34 1 9.9371 -5.1774 -0.3222 35 1 11.1708 -6.0082 -2.2560 36 1 11.2176 -6.4406 -4.7352 37 1 10.0684 -6.3513 -6.8839 38 1 7.7810 -5.4713 -7.0531 39 1 6.6007 -4.6650 -5.0788 40 1 4.2083 -2.1647 -2.1483 41 1 3.5687 -3.7587 -1.6645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969752277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:11 Heat of formation + Delta-G solvation = 59.612667 kcal Electronic energy + Delta-G solvation = -24822.777481 eV Core-core repulsion = 21282.669947 eV Total energy + Delta-G solvation = -3540.107534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34187 -39.47895 -37.63082 -37.39080 -34.26862 -33.19030 -31.72771 -31.38455 -30.20403 -29.65759 -27.85006 -25.46158 -23.83407 -23.72483 -22.72526 -22.28488 -20.39248 -19.66133 -18.25917 -17.71857 -17.52408 -16.84604 -16.29540 -16.04387 -15.75593 -14.95535 -14.80436 -14.36188 -14.10770 -13.99779 -13.83053 -13.42580 -13.27481 -13.00510 -12.72013 -12.59904 -12.35633 -12.22126 -11.99389 -11.76904 -11.67276 -11.22797 -10.89248 -10.74777 -10.53695 -10.40370 -10.13103 -9.88556 -9.62737 -9.41765 -9.36898 -9.00589 -8.49151 -8.24624 -7.37770 -5.81542 -3.19438 -0.16098 0.62160 1.50451 2.53303 2.98086 3.10089 3.35427 3.38631 3.43835 3.88393 3.93068 4.27584 4.42573 4.51312 4.55182 4.62506 4.83079 4.86598 4.96312 5.04276 5.13309 5.23048 5.25114 5.44208 5.55193 5.58392 5.60433 5.76194 5.80477 5.87253 5.93343 6.02897 6.10546 6.23319 6.24139 6.31778 6.38414 6.47479 6.58855 6.64410 6.78865 7.48095 7.68655 7.93059 8.21607 8.37230 9.13799 9.85899 10.03946 11.36224 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.003075 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.523476 B = 9104.028280 C = 9714.718060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.252 4.252 8 H 0.093 0.907 9 N -0.737 5.737 10 C 0.177 3.823 11 H 0.075 0.925 12 C -0.149 4.149 13 C 0.109 3.891 14 N -0.586 5.586 15 C 0.576 3.424 16 O -0.535 6.535 17 C 0.135 3.865 18 N -0.452 5.452 19 C 0.071 3.929 20 C -0.136 4.136 21 C -0.030 4.030 22 C -0.123 4.123 23 C -0.093 4.093 24 C -0.126 4.126 25 C -0.088 4.088 26 C -0.073 4.073 27 C 0.081 3.919 28 H 0.261 0.739 29 H 0.364 0.636 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.174 0.826 40 H 0.075 0.925 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.800 -13.037 -6.155 28.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.382 4.382 8 H 0.111 0.889 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.093 0.907 12 C -0.187 4.187 13 C -0.014 4.014 14 N -0.317 5.317 15 C 0.363 3.637 16 O -0.413 6.413 17 C -0.017 4.017 18 N -0.164 5.164 19 C -0.074 4.074 20 C -0.156 4.156 21 C -0.035 4.035 22 C -0.141 4.141 23 C -0.112 4.112 24 C -0.144 4.144 25 C -0.106 4.106 26 C -0.076 4.076 27 C -0.044 4.044 28 H 0.071 0.929 29 H 0.198 0.802 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.191 0.809 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.858 -12.843 -5.904 27.731 hybrid contribution 1.141 0.836 -0.755 1.603 sum 24.999 -12.007 -6.659 28.521 Atomic orbital electron populations 1.69699 1.05137 1.25987 1.56820 1.24685 0.95232 0.97278 1.01554 0.86565 0.79237 0.84938 0.77882 1.20975 1.21637 1.20218 1.19090 0.80328 0.94913 1.43869 0.88942 1.42725 1.04180 1.01565 1.89407 1.21183 0.90629 0.89832 0.91824 0.90735 1.23222 0.96594 0.98185 1.00739 1.22615 0.98458 0.98227 0.82101 1.48423 1.16871 1.56498 1.09915 1.17398 0.84345 0.78851 0.83108 1.90588 1.62947 1.58758 1.29040 1.21433 0.94571 0.96838 0.88855 1.67596 1.09653 1.12780 1.26379 1.22274 0.90134 0.95737 0.99304 1.22119 1.01122 0.99953 0.92423 1.18198 0.93135 0.97635 0.94557 1.20908 1.00111 1.01325 0.91706 1.21082 0.94978 0.97351 0.97806 1.21136 0.94782 0.99065 0.99390 1.22243 1.02458 0.95484 0.90454 1.18697 0.94053 1.00089 0.94766 1.23263 0.80753 0.98357 1.01991 0.92923 0.80237 0.90940 0.89795 0.91115 0.88671 0.82252 0.84138 0.85073 0.85570 0.85352 0.80892 0.90619 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.81 27.74 -169.99 -4.71 17.10 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.25 -6.96 10.46 -15.06 -0.16 -7.12 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.74 -16.91 4.98 -51.65 -0.26 -17.17 16 10 C 0.18 3.27 3.59 -66.10 -0.24 3.04 16 11 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 12 C -0.15 -2.17 6.71 -24.46 -0.16 -2.33 16 13 C 0.11 1.47 5.87 -2.41 -0.01 1.46 16 14 N -0.59 -9.58 3.32 -171.46 -0.57 -10.15 16 15 C 0.58 9.66 7.81 -12.28 -0.10 9.56 16 16 O -0.53 -10.04 13.77 5.33 0.07 -9.96 16 17 C 0.13 1.92 6.77 -82.55 -0.56 1.37 16 18 N -0.45 -5.59 6.67 -9.81 -0.07 -5.65 16 19 C 0.07 0.66 11.06 -18.03 -0.20 0.46 16 20 C -0.14 -1.15 9.88 -39.28 -0.39 -1.54 16 21 C -0.03 -0.32 5.75 -106.82 -0.61 -0.93 16 22 C -0.12 -1.02 9.82 -39.53 -0.39 -1.41 16 23 C -0.09 -0.76 9.95 -39.89 -0.40 -1.16 16 24 C -0.13 -1.25 9.95 -39.87 -0.40 -1.64 16 25 C -0.09 -1.12 9.23 -39.60 -0.37 -1.49 16 26 C -0.07 -0.96 5.76 -106.59 -0.61 -1.58 16 27 C 0.08 1.51 6.62 -3.07 -0.02 1.49 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.36 8.22 5.57 -40.82 -0.23 7.99 16 30 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.21 6.08 -51.93 -0.32 0.89 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.17 2.53 4.96 -52.50 -0.26 2.27 16 40 H 0.08 1.56 8.03 -51.93 -0.42 1.15 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -33.06 337.76 -9.41 -42.47 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.03 Total: 8.08 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -4.71 Total: -1.66 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.12 Total: -61.11 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.06 -9.41 -42.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969752277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.081 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds