Wall clock time and date at job start Fri Apr 10 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48502 * 109.47104 * 270.00148 * 3 2 1 5 5 H 1.48502 * 109.46740 * 30.00188 * 3 2 1 6 6 H 1.48504 * 109.46870 * 150.00041 * 3 2 1 7 7 C 1.38817 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00431 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99704 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00020 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.78068 * 323.21683 * 10 9 7 12 12 C 1.55157 * 110.72064 * 199.98090 * 10 9 7 13 13 C 1.55133 * 101.48027 * 205.97132 * 12 10 9 14 14 N 1.47420 * 104.72626 * 37.29434 * 13 12 10 15 15 C 1.34776 * 125.64975 * 155.81666 * 14 13 12 16 16 O 1.21543 * 120.00179 * 179.68920 * 15 14 13 17 17 C 1.47945 * 119.99916 * 359.69043 * 15 14 13 18 18 N 1.32207 * 120.15924 * 5.76813 * 17 15 14 19 19 C 1.32022 * 122.67709 * 180.02562 * 18 17 15 20 20 C 1.36695 * 122.03603 * 359.72885 * 19 18 17 21 21 C 1.40527 * 118.84231 * 0.51653 * 20 19 18 22 22 C 1.40325 * 122.22743 * 179.78806 * 21 20 19 23 23 C 1.36205 * 119.45579 * 179.71914 * 22 21 20 24 24 C 1.39383 * 121.00138 * 0.02562 * 23 22 21 25 25 C 1.36261 * 121.08189 * 359.97438 * 24 23 22 26 26 C 1.40090 * 119.53581 * 359.95429 * 25 24 23 27 27 C 1.47019 * 108.70212 * 335.55275 * 14 13 12 28 28 H 0.96996 * 120.00176 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99657 * 0.02562 * 9 7 2 30 30 H 1.09000 * 111.00203 * 324.20320 * 12 10 9 31 31 H 1.08996 * 111.00589 * 88.02235 * 12 10 9 32 32 H 1.08995 * 110.49705 * 278.44414 * 13 12 10 33 33 H 1.09001 * 110.34054 * 156.05785 * 13 12 10 34 34 H 1.08002 * 118.98339 * 179.97438 * 19 18 17 35 35 H 1.07992 * 120.57770 * 180.27096 * 20 19 18 36 36 H 1.08000 * 120.26986 * 359.73827 * 22 21 20 37 37 H 1.07997 * 119.50300 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.46171 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.23125 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.88542 * 120.70498 * 27 14 13 41 41 H 1.09007 * 109.88210 * 241.71964 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5989 -3.2138 0.6095 12 6 5.5680 -2.2643 0.4942 13 6 6.3000 -3.4439 -0.1981 14 7 5.6611 -3.5563 -1.5219 15 6 6.2230 -4.0954 -2.6220 16 8 5.5982 -4.1403 -3.6636 17 6 7.6002 -4.6324 -2.5617 18 7 8.2408 -4.6896 -1.4067 19 6 9.4700 -5.1586 -1.2958 20 6 10.1679 -5.6256 -2.3744 21 6 9.5595 -5.5944 -3.6407 22 6 10.2121 -6.0513 -4.7959 23 6 9.5667 -6.0002 -5.9943 24 6 8.2690 -5.5007 -6.0902 25 6 7.6061 -5.0489 -4.9888 26 6 8.2372 -5.0872 -3.7387 27 6 4.3073 -2.9887 -1.4417 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0007 30 1 5.9621 -1.3049 0.1591 31 1 5.6277 -2.3515 1.5790 32 1 6.1620 -4.3643 0.3692 33 1 7.3612 -3.2198 -0.3068 34 1 9.9371 -5.1774 -0.3222 35 1 11.1708 -6.0082 -2.2560 36 1 11.2176 -6.4406 -4.7352 37 1 10.0684 -6.3513 -6.8839 38 1 7.7810 -5.4713 -7.0531 39 1 6.6007 -4.6650 -5.0788 40 1 4.2083 -2.1647 -2.1483 41 1 3.5687 -3.7587 -1.6645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969752277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:11 Heat of formation + Delta-G solvation = 38.198095 kcal Electronic energy + Delta-G solvation = -24823.706087 eV Core-core repulsion = 21282.669947 eV Total energy + Delta-G solvation = -3541.036140 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22438 -40.67007 -38.81960 -38.36447 -36.05862 -34.05875 -33.54618 -32.18596 -31.56740 -30.66126 -29.30450 -26.63339 -25.26289 -24.50370 -23.93731 -23.44860 -21.83362 -20.89241 -19.77954 -19.08027 -18.33508 -17.88590 -17.62403 -17.01810 -16.76553 -16.52959 -15.87345 -15.59448 -15.52442 -15.01689 -14.82799 -14.69590 -14.47809 -14.29693 -14.01745 -13.88666 -13.73930 -13.33038 -13.13639 -13.02235 -12.77310 -12.52989 -12.43543 -12.31634 -12.14672 -11.85213 -11.60421 -11.19479 -11.08586 -11.01438 -10.37038 -10.15317 -9.75373 -9.42220 -9.05735 -8.04775 -5.40851 -0.98772 -0.12249 0.68155 1.37020 1.41219 1.47897 1.59795 1.77236 2.17992 2.46813 2.96304 3.06561 3.25147 3.50032 3.55876 3.64271 3.76890 3.80833 3.87677 3.94962 4.16687 4.27455 4.28612 4.35607 4.43285 4.47362 4.49010 4.73541 4.75283 4.84795 4.96386 5.00258 5.06103 5.11790 5.13395 5.25449 5.35119 5.39937 5.53114 5.62335 5.74539 5.89061 6.18908 6.39353 6.67226 6.99626 7.03802 7.77000 7.96591 9.16336 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.003075 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.523476 B = 9104.028280 C = 9714.718060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.237 4.237 8 H 0.059 0.941 9 N -0.739 5.739 10 C 0.170 3.830 11 H 0.073 0.927 12 C -0.133 4.133 13 C 0.117 3.883 14 N -0.592 5.592 15 C 0.568 3.432 16 O -0.571 6.571 17 C 0.094 3.906 18 N -0.454 5.454 19 C 0.054 3.946 20 C -0.104 4.104 21 C -0.052 4.052 22 C -0.106 4.106 23 C -0.101 4.101 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.087 4.087 27 C 0.091 3.909 28 H 0.259 0.741 29 H 0.369 0.631 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.198 0.802 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.047 0.953 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.550 -14.004 -5.553 34.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.368 4.368 8 H 0.077 0.923 9 N -0.381 5.381 10 C 0.060 3.940 11 H 0.091 0.909 12 C -0.172 4.172 13 C -0.005 4.005 14 N -0.322 5.322 15 C 0.357 3.643 16 O -0.451 6.451 17 C -0.055 4.055 18 N -0.166 5.166 19 C -0.092 4.092 20 C -0.124 4.124 21 C -0.057 4.057 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.132 4.132 25 C -0.153 4.153 26 C -0.090 4.090 27 C -0.034 4.034 28 H 0.068 0.932 29 H 0.203 0.797 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.215 0.785 35 H 0.205 0.795 36 H 0.191 0.809 37 H 0.180 0.820 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.066 0.934 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 29.667 -13.843 -5.292 33.163 hybrid contribution -0.507 0.922 -1.039 1.479 sum 29.160 -12.921 -6.331 32.516 Atomic orbital electron populations 1.69884 1.07209 1.26806 1.59251 1.25526 0.96109 1.01363 1.02278 0.85426 0.79034 0.79559 0.77880 1.21105 1.22039 1.16819 1.19043 0.82422 0.93595 1.41763 0.92328 1.42666 1.02572 1.03427 1.89457 1.21356 0.92953 0.88043 0.91607 0.90939 1.23188 0.92870 0.98763 1.02378 1.22742 0.98857 0.98400 0.80476 1.48472 1.15887 1.56672 1.11208 1.18018 0.85630 0.78196 0.82444 1.90576 1.64294 1.59975 1.30303 1.20906 0.93640 1.00574 0.90396 1.67451 1.11108 1.12480 1.25520 1.22944 0.89130 0.95702 1.01452 1.22666 1.02374 0.96512 0.90809 1.18593 0.92202 0.98262 0.96692 1.21423 1.01379 0.98981 0.90580 1.21466 0.94009 0.96987 0.99510 1.21423 0.95705 0.97106 0.98959 1.22018 1.02069 0.99056 0.92141 1.18859 0.95553 1.00385 0.94178 1.22842 0.82307 0.96947 1.01334 0.93247 0.79678 0.90705 0.87080 0.89727 0.87081 0.78521 0.79481 0.80940 0.82007 0.83985 0.84157 0.93432 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.54 13.97 21.65 0.30 -63.23 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 3 Si 0.95 45.59 27.74 68.60 1.90 47.49 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.24 -10.26 6.52 99.48 0.65 -9.61 16 7 C -0.24 -13.56 10.46 84.03 0.88 -12.68 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.74 -34.20 4.98 -317.32 -1.58 -35.78 16 10 C 0.17 6.40 3.59 46.18 0.17 6.56 16 11 H 0.07 2.76 8.12 -2.39 -0.02 2.74 16 12 C -0.13 -3.65 6.71 32.06 0.22 -3.43 16 13 C 0.12 3.02 5.87 86.93 0.51 3.53 16 14 N -0.59 -20.11 3.32 -814.64 -2.71 -22.82 16 15 C 0.57 20.36 7.81 86.82 0.68 21.04 16 16 O -0.57 -23.76 13.77 -3.85 -0.05 -23.81 16 17 C 0.09 2.74 6.77 42.43 0.29 3.03 16 18 N -0.45 -10.40 6.67 -184.94 -1.23 -11.64 16 19 C 0.05 0.79 11.06 84.30 0.93 1.72 16 20 C -0.10 -1.24 9.88 22.47 0.22 -1.01 16 21 C -0.05 -0.94 5.75 -21.29 -0.12 -1.06 16 22 C -0.11 -1.29 9.82 22.30 0.22 -1.07 16 23 C -0.10 -1.31 9.95 22.07 0.22 -1.09 16 24 C -0.11 -2.19 9.95 22.08 0.22 -1.97 16 25 C -0.13 -3.65 9.23 22.26 0.21 -3.44 16 26 C -0.09 -2.29 5.76 -21.14 -0.12 -2.41 16 27 C 0.09 3.62 6.62 86.73 0.57 4.19 16 28 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.37 16.28 5.57 -92.71 -0.52 15.76 16 30 H 0.07 2.05 8.00 -2.39 -0.02 2.03 16 31 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 2.58 6.08 -2.39 -0.01 2.56 16 34 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 39 H 0.14 4.70 4.96 -3.01 -0.01 4.68 16 40 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 41 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -79.18 337.76 2.67 -76.51 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.49 Total: 24.53 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.55 Total: 8.75 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -5.22 Total: -133.47 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -79.18 2.67 -76.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969752277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.706 kcal (2) G-P(sol) polarization free energy of solvation -79.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds