Wall clock time and date at job start Fri Apr 10 2020 22:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48501 * 109.47010 * 240.00301 * 3 2 1 5 5 H 1.48508 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47570 * 119.99485 * 3 2 1 7 7 C 1.38814 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00104 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.77889 * 323.21721 * 10 9 7 12 12 C 1.55152 * 110.72140 * 199.97478 * 10 9 7 13 13 C 1.55127 * 101.48819 * 205.97002 * 12 10 9 14 14 N 1.47424 * 104.72120 * 37.29618 * 13 12 10 15 15 C 1.34773 * 125.64850 * 155.81458 * 14 13 12 16 16 O 1.21563 * 120.00217 * 5.11098 * 15 14 13 17 17 C 1.47768 * 120.00158 * 185.10282 * 15 14 13 18 18 C 1.40629 * 119.80394 * 351.89610 * 17 15 14 19 19 C 1.35706 * 120.92171 * 179.97438 * 18 17 15 20 20 C 1.40753 * 120.11611 * 359.95749 * 19 18 17 21 21 N 1.33649 * 120.84207 * 180.02562 * 20 19 18 22 22 C 1.31119 * 121.39597 * 180.02562 * 21 20 19 23 23 C 1.39316 * 121.77228 * 359.97438 * 22 21 20 24 24 C 1.36583 * 119.89934 * 359.77775 * 23 22 21 25 25 C 1.40881 * 118.16036 * 0.45701 * 24 23 22 26 26 C 1.38548 * 119.80574 * 171.86765 * 17 15 14 27 27 C 1.47026 * 108.70141 * 335.55441 * 14 13 12 28 28 H 0.97001 * 120.00079 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00110 * 359.97438 * 9 7 2 30 30 H 1.09006 * 111.00595 * 324.21387 * 12 10 9 31 31 H 1.09004 * 111.00269 * 88.02046 * 12 10 9 32 32 H 1.09000 * 110.49445 * 278.45612 * 13 12 10 33 33 H 1.09003 * 110.34283 * 156.05987 * 13 12 10 34 34 H 1.07998 * 119.54205 * 359.97438 * 18 17 15 35 35 H 1.08008 * 119.94016 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.11049 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.04681 * 180.02562 * 23 22 21 38 38 H 1.07996 * 120.91639 * 180.28492 * 24 23 22 39 39 H 1.08000 * 120.30253 * 0.05117 * 26 17 15 40 40 H 1.09004 * 109.87747 * 120.70590 * 27 14 13 41 41 H 1.08999 * 109.87932 * 241.86359 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9583 -3.5836 -0.6097 12 6 1.1514 -4.8141 -0.4952 13 6 1.8067 -6.0381 0.1969 14 7 2.2230 -5.5413 1.5210 15 6 2.4085 -6.2976 2.6210 16 8 2.3212 -7.5079 2.5483 17 6 2.7182 -5.6557 3.9154 18 6 2.9870 -4.2762 3.9650 19 6 3.2735 -3.6633 5.1414 20 6 3.3045 -4.4070 6.3359 21 7 3.5845 -3.8182 7.5026 22 6 3.6168 -4.5006 8.6218 23 6 3.3614 -5.8698 8.6537 24 6 3.0634 -6.5339 7.4981 25 6 3.0348 -5.7983 6.2969 26 6 2.7415 -6.4163 5.0732 27 6 2.4084 -4.0849 1.4412 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 0.1233 -4.6758 -0.1605 31 1 1.1974 -4.9092 -1.5801 32 1 2.6731 -6.3786 -0.3701 33 1 1.0820 -6.8451 0.3052 34 1 2.9651 -3.6964 3.0541 35 1 3.4779 -2.6029 5.1610 36 1 3.8467 -3.9872 9.5437 37 1 3.3950 -6.4044 9.5915 38 1 2.8581 -7.5942 7.5046 39 1 2.5352 -7.4756 5.0335 40 1 1.7440 -3.5875 2.1478 41 1 3.4451 -3.8306 1.6619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969800977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:14 Heat of formation + Delta-G solvation = 63.383673 kcal Electronic energy + Delta-G solvation = -24785.752403 eV Core-core repulsion = 21245.808391 eV Total energy + Delta-G solvation = -3539.944011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07151 -39.89557 -37.50799 -36.72877 -34.17836 -33.64881 -31.92227 -31.02715 -30.16822 -29.46628 -27.71630 -25.24914 -24.32466 -23.61610 -22.61657 -22.06194 -20.41554 -19.89246 -18.65414 -17.37889 -17.22344 -16.89744 -16.08096 -15.91329 -15.24315 -14.80650 -14.69071 -14.42673 -14.12759 -13.95159 -13.70219 -13.48916 -13.31079 -13.21812 -12.90271 -12.64412 -12.18897 -12.06021 -11.71960 -11.63862 -11.52827 -10.95575 -10.85685 -10.75402 -10.49068 -10.40948 -10.14035 -9.95083 -9.78145 -9.65873 -9.04043 -8.93233 -8.57150 -8.27545 -7.16672 -5.90580 -3.22524 0.10253 0.56468 1.77842 2.39825 3.08814 3.30853 3.37272 3.42581 3.43274 4.01220 4.12630 4.40109 4.45158 4.52653 4.52932 4.67607 4.88481 4.96378 5.00070 5.07475 5.21168 5.29164 5.32780 5.48897 5.56257 5.62583 5.65709 5.71810 5.84490 5.88620 5.92718 6.00826 6.11194 6.16469 6.23514 6.26567 6.34829 6.38964 6.47277 6.67702 6.73775 7.56906 7.65676 7.73358 8.22548 8.26780 9.38722 9.91247 10.25984 11.31012 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.003951 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.760726 B = 7084.949633 C = 9054.409229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.170 3.830 11 H 0.068 0.932 12 C -0.141 4.141 13 C 0.111 3.889 14 N -0.605 5.605 15 C 0.570 3.430 16 O -0.551 6.551 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.097 4.097 20 C 0.142 3.858 21 N -0.476 5.476 22 C 0.135 3.865 23 C -0.185 4.185 24 C -0.047 4.047 25 C -0.116 4.116 26 C -0.034 4.034 27 C 0.058 3.942 28 H 0.258 0.742 29 H 0.388 0.612 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.179 0.821 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.087 0.913 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -12.785 12.158 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.180 4.180 13 C -0.012 4.012 14 N -0.337 5.337 15 C 0.360 3.640 16 O -0.431 6.431 17 C -0.125 4.125 18 C -0.131 4.131 19 C -0.116 4.116 20 C 0.021 3.979 21 N -0.184 5.184 22 C -0.037 4.037 23 C -0.205 4.205 24 C -0.073 4.073 25 C -0.118 4.118 26 C -0.054 4.054 27 C -0.067 4.067 28 H 0.068 0.932 29 H 0.222 0.778 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.195 0.805 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.105 0.895 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.109 -12.344 12.023 18.283 hybrid contribution -0.013 0.109 0.264 0.286 sum 6.096 -12.236 12.287 18.380 Atomic orbital electron populations 1.69644 1.05209 1.26177 1.56417 1.24771 0.95484 0.97864 1.02065 0.86276 0.78614 0.83315 0.78005 1.21103 1.21621 1.21001 1.19199 0.91094 0.83875 1.44408 0.90893 1.42384 1.05859 0.99324 1.87680 1.21254 0.95166 0.86526 0.91261 0.91364 1.23123 1.00201 0.94118 1.00524 1.22264 0.99010 0.97363 0.82545 1.48399 1.66307 1.09291 1.09714 1.17884 0.77193 0.85965 0.82946 1.90737 1.53085 1.13521 1.85740 1.19914 1.04652 0.94397 0.93546 1.22783 0.94769 0.94164 1.01361 1.20834 1.00120 1.00766 0.89862 1.19108 0.96011 0.90086 0.92696 1.68095 1.13169 1.39028 0.98082 1.23027 0.92918 0.91435 0.96368 1.21869 1.02988 0.96227 0.99390 1.21533 0.94158 1.00217 0.91381 1.18780 1.03829 0.94645 0.94559 1.21380 0.94023 1.00092 0.89869 1.23849 1.00781 0.78560 1.03521 0.93191 0.77760 0.90417 0.89830 0.91376 0.90730 0.80470 0.83969 0.82372 0.84457 0.84211 0.83985 0.89489 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.71 -16.04 5.18 -51.65 -0.27 -16.31 16 10 C 0.17 2.97 3.59 -66.10 -0.24 2.73 16 11 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 12 C -0.14 -2.06 6.71 -24.47 -0.16 -2.23 16 13 C 0.11 1.55 6.90 -2.41 -0.02 1.53 16 14 N -0.60 -9.43 3.32 -177.75 -0.59 -10.03 16 15 C 0.57 9.44 7.80 -12.37 -0.10 9.34 16 16 O -0.55 -10.24 16.64 5.31 0.09 -10.15 16 17 C -0.12 -1.83 5.87 -104.99 -0.62 -2.45 16 18 C -0.11 -1.63 8.48 -39.59 -0.34 -1.97 16 19 C -0.10 -1.40 9.95 -39.54 -0.39 -1.79 16 20 C 0.14 2.02 6.61 -84.78 -0.56 1.46 16 21 N -0.48 -6.42 10.33 -10.92 -0.11 -6.53 16 22 C 0.14 1.34 11.15 -17.45 -0.19 1.15 16 23 C -0.18 -1.54 10.03 -39.78 -0.40 -1.94 16 24 C -0.05 -0.45 9.89 -39.18 -0.39 -0.84 16 25 C -0.12 -1.49 5.74 -106.82 -0.61 -2.10 16 26 C -0.03 -0.45 9.34 -38.74 -0.36 -0.82 16 27 C 0.06 0.93 4.61 -3.06 -0.01 0.92 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.39 9.42 7.71 -40.82 -0.31 9.11 16 30 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.18 2.61 2.69 -60.51 -0.16 2.44 16 35 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 40 H 0.09 1.52 6.54 -51.93 -0.34 1.18 16 41 H 0.07 1.06 6.79 -51.93 -0.35 0.71 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -31.27 341.77 -9.58 -40.85 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.91 Total: 10.44 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -4.64 Total: -3.84 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.25 Total: -58.59 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.27 -9.58 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969800977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.229 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds