Wall clock time and date at job start Fri Apr 10 2020 22:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48501 * 109.47010 * 240.00301 * 3 2 1 5 5 H 1.48508 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47570 * 119.99485 * 3 2 1 7 7 C 1.38814 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00104 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.77889 * 323.21721 * 10 9 7 12 12 C 1.55152 * 110.72140 * 199.97478 * 10 9 7 13 13 C 1.55127 * 101.48819 * 205.97002 * 12 10 9 14 14 N 1.47424 * 104.72120 * 37.29618 * 13 12 10 15 15 C 1.34773 * 125.64850 * 155.81458 * 14 13 12 16 16 O 1.21563 * 120.00217 * 5.11098 * 15 14 13 17 17 C 1.47768 * 120.00158 * 185.10282 * 15 14 13 18 18 C 1.40629 * 119.80394 * 351.89610 * 17 15 14 19 19 C 1.35706 * 120.92171 * 179.97438 * 18 17 15 20 20 C 1.40753 * 120.11611 * 359.95749 * 19 18 17 21 21 N 1.33649 * 120.84207 * 180.02562 * 20 19 18 22 22 C 1.31119 * 121.39597 * 180.02562 * 21 20 19 23 23 C 1.39316 * 121.77228 * 359.97438 * 22 21 20 24 24 C 1.36583 * 119.89934 * 359.77775 * 23 22 21 25 25 C 1.40881 * 118.16036 * 0.45701 * 24 23 22 26 26 C 1.38548 * 119.80574 * 171.86765 * 17 15 14 27 27 C 1.47026 * 108.70141 * 335.55441 * 14 13 12 28 28 H 0.97001 * 120.00079 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00110 * 359.97438 * 9 7 2 30 30 H 1.09006 * 111.00595 * 324.21387 * 12 10 9 31 31 H 1.09004 * 111.00269 * 88.02046 * 12 10 9 32 32 H 1.09000 * 110.49445 * 278.45612 * 13 12 10 33 33 H 1.09003 * 110.34283 * 156.05987 * 13 12 10 34 34 H 1.07998 * 119.54205 * 359.97438 * 18 17 15 35 35 H 1.08008 * 119.94016 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.11049 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.04681 * 180.02562 * 23 22 21 38 38 H 1.07996 * 120.91639 * 180.28492 * 24 23 22 39 39 H 1.08000 * 120.30253 * 0.05117 * 26 17 15 40 40 H 1.09004 * 109.87747 * 120.70590 * 27 14 13 41 41 H 1.08999 * 109.87932 * 241.86359 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9583 -3.5836 -0.6097 12 6 1.1514 -4.8141 -0.4952 13 6 1.8067 -6.0381 0.1969 14 7 2.2230 -5.5413 1.5210 15 6 2.4085 -6.2976 2.6210 16 8 2.3212 -7.5079 2.5483 17 6 2.7182 -5.6557 3.9154 18 6 2.9870 -4.2762 3.9650 19 6 3.2735 -3.6633 5.1414 20 6 3.3045 -4.4070 6.3359 21 7 3.5845 -3.8182 7.5026 22 6 3.6168 -4.5006 8.6218 23 6 3.3614 -5.8698 8.6537 24 6 3.0634 -6.5339 7.4981 25 6 3.0348 -5.7983 6.2969 26 6 2.7415 -6.4163 5.0732 27 6 2.4084 -4.0849 1.4412 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 0.1233 -4.6758 -0.1605 31 1 1.1974 -4.9092 -1.5801 32 1 2.6731 -6.3786 -0.3701 33 1 1.0820 -6.8451 0.3052 34 1 2.9651 -3.6964 3.0541 35 1 3.4779 -2.6029 5.1610 36 1 3.8467 -3.9872 9.5437 37 1 3.3950 -6.4044 9.5915 38 1 2.8581 -7.5942 7.5046 39 1 2.5352 -7.4756 5.0335 40 1 1.7440 -3.5875 2.1478 41 1 3.4451 -3.8306 1.6619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969800977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:14 Heat of formation + Delta-G solvation = 43.949572 kcal Electronic energy + Delta-G solvation = -24786.595128 eV Core-core repulsion = 21245.808391 eV Total energy + Delta-G solvation = -3540.786737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07785 -41.05366 -38.83588 -37.78020 -35.89132 -34.54888 -33.41068 -32.36156 -31.16497 -30.72051 -29.18004 -26.46036 -25.68524 -24.83498 -23.77505 -23.12087 -21.80045 -21.08019 -19.71578 -19.18663 -18.24894 -17.90887 -17.40549 -17.05767 -16.47700 -16.25416 -15.73055 -15.58605 -15.32379 -15.20566 -15.07464 -14.77118 -14.74434 -14.26596 -14.01856 -13.81477 -13.43075 -13.17990 -13.10171 -12.82845 -12.73276 -12.67341 -12.49598 -12.15950 -11.80976 -11.70926 -11.64587 -11.59355 -11.22632 -10.86140 -10.51788 -9.91287 -9.76833 -9.32798 -9.05446 -7.93237 -5.23278 -0.84101 -0.36723 0.83940 1.35199 1.52283 1.53382 1.59091 1.86720 2.20768 2.58267 3.04650 3.21034 3.31980 3.39617 3.51612 3.68161 3.79460 3.84598 3.89480 3.96271 3.99971 4.02711 4.29926 4.30837 4.36456 4.49641 4.53515 4.66232 4.73115 4.79613 4.84231 4.92195 4.96443 5.01387 5.11918 5.15546 5.21807 5.26566 5.37822 5.47861 5.56659 5.73895 6.27082 6.37078 6.87902 6.95941 7.35641 8.06749 8.30240 9.29400 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.003951 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.760726 B = 7084.949633 C = 9054.409229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.163 3.837 11 H 0.076 0.924 12 C -0.129 4.129 13 C 0.112 3.888 14 N -0.606 5.606 15 C 0.570 3.430 16 O -0.575 6.575 17 C -0.148 4.148 18 C -0.116 4.116 19 C -0.112 4.112 20 C 0.125 3.875 21 N -0.515 5.515 22 C 0.139 3.861 23 C -0.170 4.170 24 C -0.049 4.049 25 C -0.131 4.131 26 C -0.023 4.023 27 C 0.074 3.926 28 H 0.250 0.750 29 H 0.376 0.624 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.171 0.829 35 H 0.140 0.860 36 H 0.193 0.807 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.228 -14.396 14.092 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.101 0.899 9 N -0.363 5.363 10 C 0.053 3.947 11 H 0.094 0.906 12 C -0.167 4.167 13 C -0.010 4.010 14 N -0.337 5.337 15 C 0.361 3.639 16 O -0.457 6.457 17 C -0.151 4.151 18 C -0.135 4.135 19 C -0.131 4.131 20 C 0.004 3.996 21 N -0.223 5.223 22 C -0.033 4.033 23 C -0.190 4.190 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.043 4.043 27 C -0.052 4.052 28 H 0.059 0.941 29 H 0.209 0.791 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.188 0.812 35 H 0.157 0.843 36 H 0.210 0.790 37 H 0.199 0.801 38 H 0.189 0.811 39 H 0.171 0.829 40 H 0.088 0.912 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.480 -13.990 13.951 21.126 hybrid contribution -0.366 0.492 -0.132 0.627 sum 7.114 -13.498 13.818 20.585 Atomic orbital electron populations 1.69794 1.06619 1.26126 1.59121 1.25484 0.96167 1.00898 1.03465 0.85329 0.77271 0.79605 0.78257 1.20339 1.22731 1.20360 1.19613 0.91693 0.84817 1.41437 0.89886 1.42514 1.05484 1.00422 1.87860 1.21468 0.95623 0.85469 0.92184 0.90597 1.23036 0.99016 0.92971 1.01710 1.22370 0.99797 0.96976 0.81838 1.48422 1.66093 1.08909 1.10294 1.18101 0.76654 0.85705 0.83444 1.90709 1.54540 1.14348 1.86151 1.19868 1.07065 0.94659 0.93496 1.22604 0.95574 0.94125 1.01173 1.20889 1.00914 1.00846 0.90432 1.19236 0.96510 0.90878 0.92959 1.68118 1.15190 1.40253 0.98787 1.23791 0.90525 0.92612 0.96403 1.22350 1.00358 0.95558 1.00696 1.21960 0.93366 1.01703 0.90424 1.18996 1.04270 0.94437 0.95619 1.21566 0.92570 1.00430 0.89735 1.23513 1.00947 0.78883 1.01818 0.94073 0.79124 0.91401 0.87907 0.89530 0.90305 0.81248 0.84265 0.78993 0.80053 0.81081 0.82873 0.91229 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.61 13.06 21.65 0.28 -56.33 16 2 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.97 44.03 29.55 68.60 2.03 46.05 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -12.40 9.98 84.03 0.84 -11.56 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -32.94 5.18 -317.33 -1.64 -34.58 16 10 C 0.16 5.62 3.59 46.18 0.17 5.78 16 11 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 12 C -0.13 -3.66 6.71 32.06 0.21 -3.44 16 13 C 0.11 3.01 6.90 86.93 0.60 3.61 16 14 N -0.61 -18.75 3.32 -834.54 -2.77 -21.52 16 15 C 0.57 18.87 7.80 86.76 0.68 19.55 16 16 O -0.58 -21.20 16.64 -3.91 -0.07 -21.26 16 17 C -0.15 -4.50 5.87 -20.10 -0.12 -4.62 16 18 C -0.12 -3.51 8.48 22.27 0.19 -3.32 16 19 C -0.11 -3.35 9.95 22.30 0.22 -3.13 16 20 C 0.12 3.53 6.61 40.36 0.27 3.80 16 21 N -0.51 -13.33 10.33 -188.45 -1.95 -15.28 16 22 C 0.14 2.31 11.15 85.06 0.95 3.26 16 23 C -0.17 -2.11 10.03 22.14 0.22 -1.88 16 24 C -0.05 -0.78 9.89 22.53 0.22 -0.56 16 25 C -0.13 -3.20 5.74 -21.29 -0.12 -3.32 16 26 C -0.02 -0.61 9.34 22.82 0.21 -0.40 16 27 C 0.07 2.37 4.61 86.73 0.40 2.77 16 28 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.38 18.76 7.71 -92.71 -0.72 18.04 16 30 H 0.07 2.08 8.00 -2.38 -0.02 2.06 16 31 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 34 H 0.17 5.22 2.69 -10.45 -0.03 5.19 16 35 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 36 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 38 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.15 3.58 7.64 -2.91 -0.02 3.55 16 40 H 0.07 2.52 6.54 -2.38 -0.02 2.51 16 41 H 0.08 2.45 6.79 -2.39 -0.02 2.43 16 Total: -1.00 -69.08 341.77 1.63 -67.46 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.34 Total: 32.11 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.41 Total: 3.36 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -6.08 Total: -127.71 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.07 Total: -21.26 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.08 1.63 -67.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969800977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.406 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds