Wall clock time and date at job start Fri Apr 10 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99725 * 2 1 4 4 H 1.48503 * 109.46875 * 90.00706 * 3 2 1 5 5 H 1.48502 * 109.47274 * 210.00205 * 3 2 1 6 6 H 1.48497 * 109.47390 * 330.00536 * 3 2 1 7 7 C 1.38814 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99576 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99865 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.88750 * 322.57913 * 10 9 7 12 12 C 1.55153 * 111.00394 * 198.65208 * 10 9 7 13 13 C 1.54328 * 102.94393 * 206.42395 * 12 10 9 14 14 N 1.47025 * 107.26578 * 22.19534 * 13 12 10 15 15 C 1.34782 * 125.64391 * 181.02543 * 14 13 12 16 16 O 1.21566 * 119.99633 * 174.40978 * 15 14 13 17 17 C 1.47757 * 120.00264 * 354.39969 * 15 14 13 18 18 C 1.40595 * 120.27141 * 186.78869 * 17 15 14 19 19 N 1.30795 * 121.54049 * 179.71532 * 18 17 15 20 20 C 1.33821 * 121.71571 * 0.55146 * 19 18 17 21 21 C 1.40522 * 120.81251 * 179.70001 * 20 19 18 22 22 C 1.36127 * 119.81588 * 180.02562 * 21 20 19 23 23 C 1.39338 * 121.09028 * 0.02562 * 22 21 20 24 24 C 1.36152 * 120.83089 * 359.97438 * 23 22 21 25 25 C 1.40535 * 119.62132 * 359.97438 * 24 23 22 26 26 C 1.39018 * 120.26588 * 7.07238 * 17 15 14 27 27 C 1.47426 * 108.70963 * 1.05727 * 14 13 12 28 28 H 0.96998 * 120.00333 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99621 * 0.02562 * 9 7 2 30 30 H 1.08999 * 110.72382 * 324.78774 * 12 10 9 31 31 H 1.08995 * 110.71774 * 88.06586 * 12 10 9 32 32 H 1.08997 * 109.88316 * 262.78173 * 13 12 10 33 33 H 1.08992 * 110.01256 * 141.67972 * 13 12 10 34 34 H 1.08011 * 119.22711 * 359.97438 * 18 17 15 35 35 H 1.08000 * 120.08776 * 0.07652 * 21 20 19 36 36 H 1.08004 * 119.45673 * 179.97438 * 22 21 20 37 37 H 1.07994 * 119.58860 * 180.02562 * 23 22 21 38 38 H 1.08005 * 120.18558 * 180.02562 * 24 23 22 39 39 H 1.07998 * 121.01244 * 359.97409 * 26 17 15 40 40 H 1.08993 * 110.36907 * 217.03237 * 27 14 13 41 41 H 1.09002 * 110.36470 * 94.70476 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.6063 -3.2116 0.6181 12 6 5.5789 -2.2661 0.4616 13 6 6.3234 -3.4313 -0.2238 14 7 5.5077 -3.8556 -1.3711 15 6 5.8045 -4.8627 -2.2163 16 8 5.0068 -5.1931 -3.0720 17 6 7.0995 -5.5650 -2.1028 18 6 7.4760 -6.5174 -3.0661 19 7 8.6187 -7.1497 -2.9930 20 6 9.4812 -6.9306 -1.9935 21 6 10.7011 -7.6252 -1.9303 22 6 11.5633 -7.3868 -0.9042 23 6 11.2580 -6.4617 0.0920 24 6 10.0862 -5.7689 0.0655 25 6 9.1728 -5.9888 -0.9796 26 6 7.9530 -5.2937 -1.0395 27 6 4.3118 -2.9966 -1.4445 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0007 30 1 5.9623 -1.3065 0.1149 31 1 5.6556 -2.3443 1.5460 32 1 6.4391 -4.2596 0.4752 33 1 7.3021 -3.0975 -0.5682 34 1 6.8079 -6.7289 -3.8879 35 1 10.9542 -8.3456 -2.6941 36 1 12.4991 -7.9243 -0.8611 37 1 11.9601 -6.2913 0.8947 38 1 9.8604 -5.0539 0.8429 39 1 7.6870 -4.5700 -0.2833 40 1 3.4456 -3.5784 -1.7595 41 1 4.4823 -2.1667 -2.1303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970098113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:20 Heat of formation + Delta-G solvation = 66.303499 kcal Electronic energy + Delta-G solvation = -24548.284243 eV Core-core repulsion = 21008.466845 eV Total energy + Delta-G solvation = -3539.817398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -41.32884 -39.83554 -37.73517 -36.99342 -34.72340 -33.70519 -31.80744 -30.96413 -30.46480 -30.09768 -28.02529 -25.43972 -24.42819 -23.47802 -22.92993 -22.16686 -20.56888 -19.95280 -18.76117 -17.85652 -17.52518 -16.86304 -16.29176 -16.19939 -15.51024 -14.92530 -14.85044 -14.44382 -14.39623 -14.14153 -13.86964 -13.75230 -13.54633 -13.33339 -12.74890 -12.63951 -12.51204 -12.11757 -12.04987 -11.85342 -11.69911 -11.32247 -10.96255 -10.89947 -10.80717 -10.56993 -10.24120 -10.13854 -9.69314 -9.61311 -9.14344 -9.10399 -8.65302 -8.55968 -7.44994 -5.87324 -3.26457 -0.09532 0.33983 1.53560 2.32150 2.91729 3.09177 3.29556 3.31384 3.38843 3.81079 3.92712 4.17089 4.26080 4.42798 4.46536 4.48844 4.58644 4.66135 4.75197 4.85617 4.87162 5.00043 5.12646 5.23071 5.36346 5.41138 5.46048 5.51751 5.57958 5.67907 5.71730 5.77056 5.92582 5.99222 6.02168 6.12467 6.14139 6.29762 6.41530 6.47533 6.66189 7.48525 7.61117 7.86135 8.12384 8.30753 9.06748 9.78312 9.95296 11.30192 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.002843 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.211230 B = 9847.759202 C =10605.254148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.075 0.925 12 C -0.146 4.146 13 C 0.091 3.909 14 N -0.607 5.607 15 C 0.572 3.428 16 O -0.532 6.532 17 C -0.179 4.179 18 C 0.185 3.815 19 N -0.480 5.480 20 C 0.138 3.862 21 C -0.099 4.099 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.087 4.087 25 C -0.113 4.113 26 C -0.054 4.054 27 C 0.082 3.918 28 H 0.261 0.739 29 H 0.365 0.635 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.173 0.827 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.178 0.822 40 H 0.080 0.920 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.374 -12.097 1.623 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.066 3.934 11 H 0.093 0.907 12 C -0.184 4.184 13 C -0.032 4.032 14 N -0.340 5.340 15 C 0.360 3.640 16 O -0.410 6.410 17 C -0.184 4.184 18 C 0.011 3.989 19 N -0.187 5.187 20 C 0.017 3.983 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.106 4.106 25 C -0.115 4.115 26 C -0.080 4.080 27 C -0.043 4.043 28 H 0.072 0.928 29 H 0.198 0.802 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.190 0.810 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.194 0.806 40 H 0.099 0.901 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.993 -13.002 0.525 28.178 hybrid contribution 0.368 1.847 0.535 1.958 sum 25.362 -11.155 1.059 27.727 Atomic orbital electron populations 1.69699 1.05152 1.26075 1.56457 1.24698 0.95242 0.97312 1.01400 0.86557 0.79225 0.84922 0.77808 1.20929 1.20281 1.21594 1.19069 0.80205 0.94970 1.44247 0.88919 1.42637 1.04233 1.01382 1.89411 1.21283 0.89882 0.89921 0.92358 0.90722 1.23013 0.97029 0.97507 1.00886 1.22500 0.94943 0.97597 0.88175 1.48404 1.24844 1.32436 1.28321 1.17650 0.85805 0.79226 0.81272 1.90805 1.49658 1.65003 1.35545 1.21025 0.96765 1.01802 0.98816 1.23114 0.91726 0.88058 0.95996 1.68083 1.03158 1.24877 1.22570 1.19104 0.94500 0.94107 0.90567 1.20842 0.92025 0.99668 0.99186 1.20982 0.99425 0.97280 0.93716 1.20949 0.97232 0.96671 0.99169 1.21075 0.93466 0.99183 0.96852 1.18866 0.96088 0.99064 0.97442 1.23545 0.91212 0.96145 0.97084 1.23432 0.86170 0.93017 1.01648 0.92836 0.80191 0.90332 0.89556 0.90570 0.90836 0.81024 0.84571 0.85155 0.85276 0.84858 0.80600 0.90114 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.97 55.49 0.78 -27.57 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.07 27.74 -169.99 -4.71 16.36 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.26 -6.85 10.47 -15.06 -0.16 -7.00 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -15.97 5.08 -51.35 -0.26 -16.24 16 10 C 0.18 3.05 3.69 -65.78 -0.24 2.81 16 11 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 12 C -0.15 -1.77 6.58 -24.90 -0.16 -1.93 16 13 C 0.09 0.95 4.87 -3.06 -0.01 0.94 16 14 N -0.61 -8.80 3.33 -173.62 -0.58 -9.37 16 15 C 0.57 8.89 7.81 -12.37 -0.10 8.80 16 16 O -0.53 -10.13 16.59 5.31 0.09 -10.04 16 17 C -0.18 -2.29 5.88 -104.83 -0.62 -2.91 16 18 C 0.18 2.38 10.73 -17.10 -0.18 2.19 16 19 N -0.48 -6.16 10.30 -10.67 -0.11 -6.27 16 20 C 0.14 1.58 6.61 -84.79 -0.56 1.02 16 21 C -0.10 -0.88 9.97 -39.48 -0.39 -1.27 16 22 C -0.09 -0.63 9.94 -39.93 -0.40 -1.02 16 23 C -0.12 -0.77 9.96 -39.92 -0.40 -1.17 16 24 C -0.09 -0.64 9.77 -39.47 -0.39 -1.03 16 25 C -0.11 -1.14 5.74 -106.82 -0.61 -1.75 16 26 C -0.05 -0.56 8.45 -38.43 -0.32 -0.89 16 27 C 0.08 1.42 6.63 -2.53 -0.02 1.41 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.36 7.69 5.57 -40.82 -0.23 7.46 16 30 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.64 6.73 -51.93 -0.35 0.29 16 33 H 0.07 0.62 6.73 -51.93 -0.35 0.27 16 34 H 0.17 2.09 7.64 -52.48 -0.40 1.69 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 39 H 0.18 1.41 2.86 -55.05 -0.16 1.25 16 40 H 0.08 1.58 7.99 -51.93 -0.41 1.17 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -33.69 338.87 -9.22 -42.91 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.87 Total: 6.74 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -4.66 Total: -1.63 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.17 Total: -59.45 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.69 -9.22 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970098113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.213 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds